mRNA_A-nodosum_M_contig1180.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1180.1.1
Unique NamemRNA_A-nodosum_M_contig1180.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1180.1.1 vs. uniprot
Match: A0A6H5JYQ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYQ2_9PHAE)

HSP 1 Score: 188 bits (477), Expect = 2.030e-55
Identity = 88/118 (74.58%), Postives = 101/118 (85.59%), Query Frame = 1 
Query:    7 VVGNMQEEIKKALLPIIHYQVDLWACEVSGRKFLGTHVHYVDSSFNLQHALLGVKHYAPSSEVQDKEKASGILFTIFKATLREYGISIADLAGGTTDSGPDVKAMCVNFLLALHDVCW 360
            VVGNMQEEI KA LPIIHY +DLW C+VSGRK+LG HV YVDS+F+L+HAL+ VKHYAPS+E+Q  EKAS ILFTIF+ATL EYGI ++DLAGGTTDSG DVKAMCVN LL LH + W
Sbjct:  205 VVGNMQEEINKAPLPIIHYGLDLWTCKVSGRKYLGVHVFYVDSNFSLRHALISVKHYAPSTEIQGTEKASEILFTIFRATLAEYGIKLSDLAGGTTDSGSDVKAMCVNILLGLHKIWW 322
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BLAST of mRNA_A-nodosum_M_contig1180.1.1 vs. uniprot
Match: A0A6H5JN28_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN28_9PHAE)

HSP 1 Score: 153 bits (387), Expect = 1.160e-44
Identity = 72/112 (64.29%), Postives = 91/112 (81.25%), Query Frame = 1 
Query:   19 MQEEIKKALLPIIHYQVDLWACEVSGRKFLGTHVHYVDSSFNLQHALLGVKHYAPSSEVQDKEKASGILFTIFKATLREYGISIADLAGGTTDSGPDVKAMCVNFLLALHDV 354
            M  EI++A LPI+HY +DLW C+++G K++  HV YV+S+F LQ+ALL VKHYAPS+ VQ  +KAS ILF +FK+ LRE+G+ I+DLAGGTTDSG DVKAMCVNFLLA H V
Sbjct:    1 MLTEIERAPLPIVHYGIDLWQCKITGLKYIDGHVCYVNSNFELQYALLSVKHYAPSAAVQVTDKASEILFIVFKSVLREFGVKISDLAGGTTDSGSDVKAMCVNFLLAQHKV 112
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BLAST of mRNA_A-nodosum_M_contig1180.1.1 vs. uniprot
Match: A0A6H5L1G0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1G0_9PHAE)

HSP 1 Score: 161 bits (407), Expect = 1.020e-43
Identity = 75/120 (62.50%), Postives = 93/120 (77.50%), Query Frame = 1 
Query:    1 QAVVGNMQEEIKKALLPIIHYQVDLWACEVSGRKFLGTHVHYVDSSFNLQHALLGVKHYAPSSEVQDKEKASGILFTIFKATLREYGISIADLAGGTTDSGPDVKAMCVNFLLALHDVCW 360
            +AVVGNM  EI++A LPI+HY +DLW C+++G K++  HV YV+S+  LQH LL VKHYAPS+ VQ   KAS ILF +F + LRE+G+ I+DLAGGTTDSG DVKAMCVNFLLA H   W
Sbjct:  222 KAVVGNMLTEIERAPLPIVHYGIDLWQCKITGLKYIDVHVCYVNSNLELQHELLAVKHYAPSAAVQATGKASEILFNVFNSVLREFGVKISDLAGGTTDSGSDVKAMCVNFLLAQHKGSW 341
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BLAST of mRNA_A-nodosum_M_contig1180.1.1 vs. uniprot
Match: A0A6H5KZ46_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ46_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 8.430e-23
Identity = 45/65 (69.23%), Postives = 55/65 (84.62%), Query Frame = 1 
Query:  166 VKHYAPSSEVQDKEKASGILFTIFKATLREYGISIADLAGGTTDSGPDVKAMCVNFLLALHDVCW 360
            VKHYAPS+ VQ  EKASG+LFT+F++ L E+GI ++DLAGGTTDSG D+KAMC NFLLA H+V W
Sbjct:   82 VKHYAPSAAVQASEKASGVLFTVFRSLLAEFGIKLSDLAGGTTDSGSDIKAMCTNFLLAQHNVYW 146
[Close]
BLAST of mRNA_A-nodosum_M_contig1180.1.1 vs. uniprot
Match: D7G3L2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3L2_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 2.190e-10
Identity = 31/101 (30.69%), Postives = 55/101 (54.46%), Query Frame = 1 
Query:   13 GNMQEEIKKALLPIIHYQVDLWACEVSGRKFLGTHVHYVDSSFNLQHALLGVKHYAPSSEVQDKEKASGILFTIFKATLREYGISIADLAGGTTDSGPDVK 315
             +MQ+ ++ A +PI++   DLW   VSG K++G  V Y+D   N++  LL ++ + P        +   ++    +  L ++GI   D+AG  TD+G DV+
Sbjct:  133 ASMQKTLRNATIPILYVNCDLWTSHVSGLKYIGVRVFYLDEKMNVKTHLLAIRGFRPPGA-----QTGDVVCKWVRQVLGQHGIRDEDIAGAVTDAGSDVR 228
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BLAST of mRNA_A-nodosum_M_contig1180.1.1 vs. uniprot
Match: D7G4Z8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4Z8_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 2.270e-10
Identity = 31/101 (30.69%), Postives = 55/101 (54.46%), Query Frame = 1 
Query:   13 GNMQEEIKKALLPIIHYQVDLWACEVSGRKFLGTHVHYVDSSFNLQHALLGVKHYAPSSEVQDKEKASGILFTIFKATLREYGISIADLAGGTTDSGPDVK 315
             +MQ+ ++ A +PI++   DLW   VSG K++G  V Y+D   N++  LL ++ + P        +   ++    +  L ++GI   D+AG  TD+G DV+
Sbjct:  133 ASMQKTLRNATIPILYVNCDLWTSHVSGLKYIGVRVFYLDEKMNVKTHLLAIRGFRPPGA-----QTGDVVCKWVRQVLGQHGIRDEDIAGAVTDAGSDVR 228
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BLAST of mRNA_A-nodosum_M_contig1180.1.1 vs. uniprot
Match: G4YIY2_PHYSP (Uncharacterized protein (Fragment) n=3 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YIY2_PHYSP)

HSP 1 Score: 65.1 bits (157), Expect = 6.850e-10
Identity = 34/96 (35.42%), Postives = 52/96 (54.17%), Query Frame = 1 
Query:   70 DLWACEVSGRKFLGTHVHYVDSSFNLQHALLGVKHYAPSSEVQDKEKASGILFTIFKATLREYGISIADLAGGTTDSGPDVKAMCVNFLLALHDVC 357
            DLW  + SG KFLG  +++V + F L   LLG +H+ P    +D          I +  L ++G+++AD  G TTD GPDV+ M  + L+   + C
Sbjct:  131 DLWKAKSSGTKFLGLRLYFVTADFKLVSVLLGTRHFQPLYGERDGGIRGPFKRWIIQ-NLADFGLTVADFFGATTDGGPDVQHMMTSNLIISWEWC 225
[Close]
BLAST of mRNA_A-nodosum_M_contig1180.1.1 vs. uniprot
Match: A0A6H5L6Z1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6Z1_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 1.470e-9
Identity = 34/107 (31.78%), Postives = 61/107 (57.01%), Query Frame = 1 
Query:    1 QAVVGNMQEEIKKALLPIIHYQVDLWACEVSGRKFLGTHVHYVDSSFNLQHALLGVKHYAPSSEV-QDKEKASGILFTIFKA-TLREYGISIADLAGGTTDSGPDVK 315
            +A    + +++++AL+PI++   DLW   VSG K++G  V Y++ +  ++  +LGVK + P   V  D  K +G +   + A  L ++G+   + AG  +DSG DV 
Sbjct:  269 RAFNSELVKDVRRALIPILYLNCDLWTSRVSGEKYIGVRVCYMNENMVIKSFMLGVKLFRPKPGVGMDDGKITGRVVLKWNAQVLGQHGLRNENFAGAVSDSGSDVS 375
[Close]
BLAST of mRNA_A-nodosum_M_contig1180.1.1 vs. uniprot
Match: A0A6H5KX27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX27_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 1.470e-9
Identity = 34/107 (31.78%), Postives = 61/107 (57.01%), Query Frame = 1 
Query:    1 QAVVGNMQEEIKKALLPIIHYQVDLWACEVSGRKFLGTHVHYVDSSFNLQHALLGVKHYAPSSEV-QDKEKASGILFTIFKA-TLREYGISIADLAGGTTDSGPDVK 315
            +A    + +++++AL+PI++   DLW   VSG K++G  V Y++ +  ++  +LGVK + P   V  D  K +G +   + A  L ++G+   + AG  +DSG DV 
Sbjct:  190 RAFNSELVKDVRRALIPILYLNCDLWTSRVSGEKYIGVRVCYMNENMVIKSFMLGVKLFRPKPGVGMDDGKITGRVVLKWNAQVLGQHGLRNENFAGAVSDSGSDVS 296
[Close]
BLAST of mRNA_A-nodosum_M_contig1180.1.1 vs. uniprot
Match: A0A6A4ARC5_9STRA (Uncharacterized protein (Fragment) n=5 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A4ARC5_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 2.510e-9
Identity = 33/96 (34.38%), Postives = 51/96 (53.12%), Query Frame = 1 
Query:   70 DLWACEVSGRKFLGTHVHYVDSSFNLQHALLGVKHYAPSSEVQDKEKASGILFTIFKATLREYGISIADLAGGTTDSGPDVKAMCVNFLLALHDVC 357
            D W  + SG KFLG  +++V + F L   LLG +H+ P    +D          I +  L ++G+++AD  G TTD GPDV+ M  + L+   + C
Sbjct:   63 DFWKAKSSGTKFLGLRLYFVTADFKLVSVLLGTRHFQPLYGERDGGIRGPFKRWIIQI-LADFGLTVADFFGSTTDGGPDVQHMMTSNLMLSWEWC 157
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1180.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A6H5JYQ2_9PHAE2.030e-5574.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN28_9PHAE1.160e-4464.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L1G0_9PHAE1.020e-4362.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZ46_9PHAE8.430e-2369.23Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
D7G3L2_ECTSI2.190e-1030.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G4Z8_ECTSI2.270e-1030.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
G4YIY2_PHYSP6.850e-1035.42Uncharacterized protein (Fragment) n=3 Tax=Phytoph... [more]
A0A6H5L6Z1_9PHAE1.470e-931.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KX27_9PHAE1.470e-931.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6A4ARC5_9STRA2.510e-934.38Uncharacterized protein (Fragment) n=5 Tax=Phytoph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1180contigA-nodosum_M_contig1180:11459..12107 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G3L2
PFAMsDimer_Tnp_hAT
Model size361
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue7.43e-11
EggNOG OGs2CZK4@1|root,2SARG@2759|Eukaryota
Cds size342
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866596.9420714-CDS-A-nodosum_M_contig1180:11458..116531680866596.9420714-CDS-A-nodosum_M_contig1180:11458..11653Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1180 11459..11653 -
1680866596.9536655-CDS-A-nodosum_M_contig1180:11942..120891680866596.9536655-CDS-A-nodosum_M_contig1180:11942..12089Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1180 11943..12089 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866596.965903-UTR-A-nodosum_M_contig1180:12089..121071680866596.965903-UTR-A-nodosum_M_contig1180:12089..12107Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1180 12090..12107 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1180.1.1prot_A-nodosum_M_contig1180.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1180 11459..12089 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1180.1.1

>prot_A-nodosum_M_contig1180.1.1 ID=prot_A-nodosum_M_contig1180.1.1|Name=mRNA_A-nodosum_M_contig1180.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=114bp
MQEEIKKALLPIIHYQVDLWACEVSGRKFLGTHVHYVDSSFNLQHALLGV
KHYAPSSEVQDKEKASGILFTIFKATLREYGISIADLAGGTTDSGPDVKA
MCVNFLLALHDVCW
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mRNA from alignment at A-nodosum_M_contig1180:11459..12107-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1180.1.1 ID=mRNA_A-nodosum_M_contig1180.1.1|Name=mRNA_A-nodosum_M_contig1180.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=649bp|location=Sequence derived from alignment at A-nodosum_M_contig1180:11459..12107- (Ascophyllum nodosum dioecious)
CAGGCCGTGGTGGGGAACATGCAGGAAGAGATCAAGAAGGCCTTGCTCCC
CATCATCCACTACCAGGTGGACCTGTGGGCTTGCGAAGTCTCTGGGCGGA
AATTTCTTGGCACACACGTCCACTACGTGGACAGCTCGTTCAACCTTCAA
CACGCTCTCCTTGGTGTGAGTATAACAAAACACCAATTCGATTGTTGTTG
TTGGCAAACACGTGCAGCGCGACACGCGCGAAGTTATGGAGCCGTACTAA
ATACAAAAATTCAAAATCCGAAAGGACCGTGGGAGGTAATTTCGCCCGCT
CGCCCTCCCTGTATACCCAGTAGCTTGATCGAGGCTGTGGAAGCAGTTGC
ACCCCGAACAAAGCACGTAGATGCAGCGCTCGAAGAGTTATCGCACATAT
TTTTTTACCGTTTTTTTATGGCGCTCTTTTCTTTTTCACCCGCGTCTTGT
ATAGGTCAAGCACTACGCCCCTTCGTCCGAAGTTCAGGACAAGGAGAAGG
CAAGCGGCATCCTCTTCACGATTTTCAAGGCCACCCTTCGCGAGTACGGC
ATCAGCATCGCCGACCTCGCCGGTGGAACAACGGACAGCGGACCCGACGT
GAAGGCGATGTGCGTCAACTTTCTCCTCGCCCTCCACGACGTCTGTTGG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1180:11459..12107-

>mRNA_A-nodosum_M_contig1180.1.1 ID=mRNA_A-nodosum_M_contig1180.1.1|Name=mRNA_A-nodosum_M_contig1180.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=342bp|location=Sequence derived from alignment at A-nodosum_M_contig1180:11459..12107- (Ascophyllum nodosum dioecious)
ATGCAGGAAGAGATCAAGAAGGCCTTGCTCCCCATCATCCACTACCAGGT
GGACCTGTGGGCTTGCGAAGTCTCTGGGCGGAAATTTCTTGGCACACACG
TCCACTACGTGGACAGCTCGTTCAACCTTCAACACGCTCTCCTTGGTGTC
AAGCACTACGCCCCTTCGTCCGAAGTTCAGGACAAGGAGAAGGCAAGCGG
CATCCTCTTCACGATTTTCAAGGCCACCCTTCGCGAGTACGGCATCAGCA
TCGCCGACCTCGCCGGTGGAACAACGGACAGCGGACCCGACGTGAAGGCG
ATGTGCGTCAACTTTCTCCTCGCCCTCCACGACGTCTGTTGG
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