mRNA_A-nodosum_M_contig118.31.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig118.31.1
Unique NamemRNA_A-nodosum_M_contig118.31.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig118.31.1 vs. uniprot
Match: D7FXR9_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXR9_ECTSI)

HSP 1 Score: 120 bits (301), Expect = 1.740e-26
Identity = 58/105 (55.24%), Postives = 77/105 (73.33%), Query Frame = 1
Query:  571 YPFSMLQGFSVDGKVGDG-SDSEDYIKKCVYVDGEDSE----LDGFVMEGLSIKNCGDECVRLKNRVVNAEILENTIESCGVHHTLFESEGKNGEGIYIGTSSSQ 870
            + F  L+GFSV+GK+G   +D   ++ KCVYV+G  +     LDGFVME + ++NCG ECVRLK+ VVNA++  NTI +CGVH  +F SE KNGEG+YIGTSS+Q
Sbjct:  112 HSFITLKGFSVEGKIGSNDTDQASWVNKCVYVEGPGANSSAVLDGFVMEDMVVQNCGGECVRLKDSVVNAQVTGNTISNCGVHDYMFNSEDKNGEGVYIGTSSTQ 216          
BLAST of mRNA_A-nodosum_M_contig118.31.1 vs. uniprot
Match: A0A6H5KT05_9PHAE (Beta_helix domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KT05_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 9.150e-26
Identity = 53/99 (53.54%), Postives = 74/99 (74.75%), Query Frame = 1
Query:  586 LQGFSVDGKVGDGSDSEDYIKKCVYVDGE----DSELDGFVMEGLSIKNCGDECVRLKNRVVNAEILENTIESCGVHHTLFESEGKNGEGIYIGTSSSQ 870
            L+GFSVDGK+ D  ++E Y+ KCV+V+G     D  L+GFVM+ + ++NCGDECVRLK+ +V A I +N I+ CGV   ++ + GKNGEGIY+GTSS+Q
Sbjct:   91 LEGFSVDGKISDDDEAESYVDKCVFVEGTSTSGDERLEGFVMQDVYVQNCGDECVRLKSFIVGAVISDNVIQDCGVRDFVYGNSGKNGEGIYVGTSSTQ 189          
BLAST of mRNA_A-nodosum_M_contig118.31.1 vs. uniprot
Match: A0A6H5LEX7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LEX7_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 1.330e-25
Identity = 59/111 (53.15%), Postives = 80/111 (72.07%), Query Frame = 1
Query:  553 QSAVSLYPFSMLQGFSVDGKVGDG-SDSEDYIKKCVYVDGEDSE----LDGFVMEGLSIKNCGDECVRLKNRVVNAEILENTIESCGVHHTLFESEGKNGEGIYIGTSSSQ 870
            +S +  + F  L+GF+V+GKVG   +D   ++ KCVYV+G  S+    LDGFVME + ++NCG ECVRLK+ VVNA++  NTI +CGVH  +F S  KNGEG+YIGTSS+Q
Sbjct:  106 RSVLITHSFITLKGFTVEGKVGTSDTDEASWVNKCVYVEGPGSQSSAVLDGFVMEDMIVQNCGGECVRLKDSVVNAQVTGNTISNCGVHDFMFNSGDKNGEGVYIGTSSTQ 216          
BLAST of mRNA_A-nodosum_M_contig118.31.1 vs. uniprot
Match: D7FXR8_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXR8_ECTSI)

HSP 1 Score: 119 bits (299), Expect = 2.300e-25
Identity = 57/111 (51.35%), Postives = 81/111 (72.97%), Query Frame = 1
Query:  553 QSAVSLYPFSMLQGFSVDGKVGDG-SDSEDYIKKCVYVDGEDSE----LDGFVMEGLSIKNCGDECVRLKNRVVNAEILENTIESCGVHHTLFESEGKNGEGIYIGTSSSQ 870
            +S +  + F  L+GF+V+GK+G   +D   ++ KCVYV+G  S+    LDGFVME + ++NCG ECVRLK+ V+NA+++ NTI +CGVH  +F S  KNGEG+YIGTSS+Q
Sbjct:  106 RSVLITHSFITLKGFTVEGKIGTSDTDEASWVNKCVYVEGPGSQSSAVLDGFVMEDMIVQNCGGECVRLKDSVINAQVMGNTISNCGVHDYMFNSGDKNGEGVYIGTSSTQ 216          
BLAST of mRNA_A-nodosum_M_contig118.31.1 vs. uniprot
Match: Q6XM06_9PHYC (FirrV-1-B30 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM06_9PHYC)

HSP 1 Score: 99.8 bits (247), Expect = 1.590e-18
Identity = 46/113 (40.71%), Postives = 71/113 (62.83%), Query Frame = 1
Query:  571 YPFSMLQGFSVDGKVGDGSDSEDYIKKCVYVDG-------------EDSELDGFVMEGLSIKNCGDECVRLKNRVVNAEILENTIESCGVHHTLFESEGKNGEGIYIGTSSSQ 870
            + ++ L+GF+V GK   G+D  DY+ KC++V G              +S + G ++E + +++CG EC+RL++ V +AE+  N IE CG H  LF+  GKNGE IY+GTSS+Q
Sbjct:  109 HSYTTLRGFTVSGKRNSGNDPSDYVDKCIFVMGISSPEIERTSGIEYESSITGVIIEDMEVEDCGGECIRLRSFVTHAEVTGNRIERCGRHDYLFDGAGKNGEAIYVGTSSNQ 221          
BLAST of mRNA_A-nodosum_M_contig118.31.1 vs. uniprot
Match: UPI00036AEC55 (right-handed parallel beta-helix repeat-containing protein n=1 Tax=Hahella ganghwensis TaxID=286420 RepID=UPI00036AEC55)

HSP 1 Score: 97.1 bits (240), Expect = 2.550e-18
Identity = 48/97 (49.48%), Postives = 65/97 (67.01%), Query Frame = 1
Query:  586 LQGFSVDGKVGDGSDSEDYIKKCVYVDGEDSELD--GFVMEGLSIKNCGDECVRLKNRVVNAEILENTIESCGVHHTLFESEGKNGEGIYIGTSSSQ 870
            L+ F++DG+VG G+  ED+    VYV G + +    GFVM  +S+KN G ECVRL+  V  AEI +NT  +CGV+   F + GKNGE IY+GTSS+Q
Sbjct:  122 LRNFTIDGQVGSGNTMEDFRDILVYVKGNEPQQGPTGFVMRAMSLKNAGGECVRLRYYVTEAEIFDNTFYNCGVYDFKFNNGGKNGEAIYVGTSSNQ 218          
BLAST of mRNA_A-nodosum_M_contig118.31.1 vs. uniprot
Match: A0A261GHV7_9GAMM (DUF1565 domain-containing protein n=1 Tax=Hahella sp. CCB-MM4 TaxID=1926491 RepID=A0A261GHV7_9GAMM)

HSP 1 Score: 95.9 bits (237), Expect = 7.040e-18
Identity = 47/97 (48.45%), Postives = 62/97 (63.92%), Query Frame = 1
Query:  586 LQGFSVDGKVGDGSDSEDYIKKCVYVDGEDSEL--DGFVMEGLSIKNCGDECVRLKNRVVNAEILENTIESCGVHHTLFESEGKNGEGIYIGTSSSQ 870
            L+ F++DG VG G+  EDY K  ++V G + +   +GFVM  + I+N G ECVRL+  V  AEI  NT  +CG +   F+  GKNGE IYIGTSS Q
Sbjct:  128 LRNFTIDGLVGKGNGPEDYRKSLIFVQGTEHKQGPEGFVMRSMRIRNAGGECVRLRYHVTRAEIFGNTFYNCGAYDFQFDGRGKNGEAIYIGTSSEQ 224          
BLAST of mRNA_A-nodosum_M_contig118.31.1 vs. uniprot
Match: A0A0G0APH1_9BACT (Beta_helix domain-containing protein n=2 Tax=Candidatus Moranbacteria TaxID=1752737 RepID=A0A0G0APH1_9BACT)

HSP 1 Score: 89.7 bits (221), Expect = 1.090e-15
Identity = 43/104 (41.35%), Postives = 66/104 (63.46%), Query Frame = 1
Query:  571 YPFSMLQGFSVDGKVGDGSDSEDYIKKCVYVDGEDSE--LDGFVMEGLSIKNCGDECVRLKNRVVNAEILENTIESCGVHHTLFESEGKNGEGIYIGTSSSQVK 876
            + + +L GF+VDG  G    +E Y  K +YV G++ +  + G  ++ ++IKN G EC+RL+      EI+ N IE+CGV    F+ +GKNGEGIY+GT+  Q+K
Sbjct:  160 HDYIILDGFTVDGFYGSSDKAESYRDKLIYVLGKEKKNGVTGLRIKNMNIKNAGGECIRLRYFATKNEIVNNLIENCGVEDFKFDGDGKNGEGIYVGTAPEQLK 263          
BLAST of mRNA_A-nodosum_M_contig118.31.1 vs. uniprot
Match: A0A0G0X4X9_9BACT (Secreted protein n=1 Tax=Candidatus Daviesbacteria bacterium GW2011_GWA2_40_9 TaxID=1618424 RepID=A0A0G0X4X9_9BACT)

HSP 1 Score: 89.4 bits (220), Expect = 1.660e-15
Identity = 47/109 (43.12%), Postives = 67/109 (61.47%), Query Frame = 1
Query:  586 LQGFSVDGKVGDGSDSEDYIKKCVYVDGEDSE--LDGFVMEGLSIKNCGDECVRLKNRVVNAEILENTIESCGVHHTLFESEGKNGEGIYIGTSSSQV----KPITCPD 894
            L+GF++DG  G  S S  Y  K +YV G++++  + G  + G+++KN G EC+RL+    N EI  NTI +CGV+   F   GKNGEGIYIGT+  Q+     P + PD
Sbjct:  183 LRGFTIDGLFGSSSSSSGYRDKLLYVQGKETKSGVTGLKVLGMTLKNAGGECIRLRYFAQNNEIAGNTITNCGVYDFKFNGGGKNGEGIYIGTAPEQLGDGKNPTSDPD 291          
BLAST of mRNA_A-nodosum_M_contig118.31.1 vs. uniprot
Match: A0A1F6HQF6_9BACT (DUF1565 domain-containing protein n=1 Tax=Candidatus Levybacteria bacterium RIFCSPHIGHO2_01_FULL_40_10 TaxID=1798593 RepID=A0A1F6HQF6_9BACT)

HSP 1 Score: 87.0 bits (214), Expect = 4.620e-15
Identity = 41/99 (41.41%), Postives = 66/99 (66.67%), Query Frame = 1
Query:  586 LQGFSVDGKVGDGSDSEDYIKKCVYVDGEDSE--LDGFVMEGLSIKNCGDECVRLKNRVVNAEILENTIESCGVHHTLFESEGKNGEGIYIGTSSSQVK 876
            L GFS+DG  GD +    +  K +YV G++++  + G  ++ ++ KN G EC+RL+    N EI  +TI +CGV++ +F+ +GKNGEGIYIGT+  Q++
Sbjct:   99 LDGFSIDGLYGDLNRRSGFRDKLLYVQGKEAKNGVTGLKVQNMTFKNAGGECIRLRYFAHNNEISNSTISNCGVYYFVFKEDGKNGEGIYIGTAPEQLR 197          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig118.31.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXR9_ECTSI1.740e-2655.24FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A6H5KT05_9PHAE9.150e-2653.54Beta_helix domain-containing protein n=2 Tax=Ectoc... [more]
A0A6H5LEX7_9PHAE1.330e-2553.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXR8_ECTSI2.300e-2551.35FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
Q6XM06_9PHYC1.590e-1840.71FirrV-1-B30 n=1 Tax=Feldmannia irregularis virus a... [more]
UPI00036AEC552.550e-1849.48right-handed parallel beta-helix repeat-containing... [more]
A0A261GHV7_9GAMM7.040e-1848.45DUF1565 domain-containing protein n=1 Tax=Hahella ... [more]
A0A0G0APH1_9BACT1.090e-1541.35Beta_helix domain-containing protein n=2 Tax=Candi... [more]
A0A0G0X4X9_9BACT1.660e-1543.12Secreted protein n=1 Tax=Candidatus Daviesbacteria... [more]
A0A1F6HQF6_9BACT4.620e-1541.41DUF1565 domain-containing protein n=1 Tax=Candidat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig118contigA-nodosum_M_contig118:607212..609023 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1121935.AQXX01000136_gene4114
PFAMsBeta_helix,DUF1565
Model size1476
Max annot lvl1236|Gammaproteobacteria
Hectar predicted targeting categoryother localisation
Exons2
Evalue8.75e-22
EggNOG OGsCOG3420@1|root,COG3420@2|Bacteria,1NHJ7@1224|Proteobacteria,1SHNB@1236|Gammaproteobacteria
DescriptionParallel beta-helix repeats
Cds size462
COG categoryP
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866596.4715643-UTR-A-nodosum_M_contig118:607211..6077721680866596.4715643-UTR-A-nodosum_M_contig118:607211..607772Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig118 607212..607772 -
1680866596.5056956-UTR-A-nodosum_M_contig118:608570..6090231680866596.5056956-UTR-A-nodosum_M_contig118:608570..609023Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig118 608571..609023 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866596.482694-CDS-A-nodosum_M_contig118:607772..6079621680866596.482694-CDS-A-nodosum_M_contig118:607772..607962Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig118 607773..607962 -
1680866596.4928563-CDS-A-nodosum_M_contig118:608298..6085701680866596.4928563-CDS-A-nodosum_M_contig118:608298..608570Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig118 608299..608570 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig118.31.1prot_A-nodosum_M_contig118.31.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig118 607773..608570 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig118.31.1

>prot_A-nodosum_M_contig118.31.1 ID=prot_A-nodosum_M_contig118.31.1|Name=mRNA_A-nodosum_M_contig118.31.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=154bp
MHDHHAERGTRRQQFTAPSNDDKTTSCSFKVQDQSAVSLYPFSMLQGFSV
DGKVGDGSDSEDYIKKCVYVDGEDSELDGFVMEGLSIKNCGDECVRLKNR
VVNAEILENTIESCGVHHTLFESEGKNGEGIYIGTSSSQVKPITCPDVAM
PLR*
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mRNA from alignment at A-nodosum_M_contig118:607212..609023-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig118.31.1 ID=mRNA_A-nodosum_M_contig118.31.1|Name=mRNA_A-nodosum_M_contig118.31.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1812bp|location=Sequence derived from alignment at A-nodosum_M_contig118:607212..609023- (Ascophyllum nodosum dioecious)
CGCAGCCGTACAGCATTGTATCGAGTACCTCGGCTCTTAGCATCCGTATT TTGAGCTCGAGGGGAGCGCTCGGTCGGTCGTACAGCTCGAGGGTGTACTT CCGGAAGCTGCACCGTGCGTTGCGTACGCGCCGGTCGACCTCGATGGACA GGTCGGCATTTTGGTTTACGCTTCCCCCGAGTTATACAAACTCGTTCGTC TGGTTGCACCTGGCCCGCTGCCTCTACGCTGAATGTGGCGGTGGACTCTG TCATACTATGTCATACTATGACATACCAGGTACTATACCATACTATGTGT CATACTGTTAATAGCGAGGAGAGGAGGCGGATAGAACAAAAGGCTCCTCC AATGGTCGATCTTTACGGGCCACAACGGGACTAAAGTGATGTCAGATGCT CGTGCTAGCCAAGGTAACAACATTAAAACAATCGGCGGGCCTACAGAACA TTTATGCATGACCACCATGCTGAGCGTGGGACACGACGACAGCAGTTTAC AGCACCATCCAACGATGACAAGACAACGTCGTGCTCTTTCAAGGTTCAAG ATCAGTCAGCAGTATCGCTCTATCCTTTCTCGATGCTGCAGGGTTTTTCG GTGGATGGAAAAGTCGGGGATGGTTCTGATTCCGAGGACTATATAAAGAA GTGCGTGTATGTCGACGGCGAAGACTCTGAGCTCGATGGATTCGTCATGG AAGGCCTCTCCATTAAAAATTGCGGGTGAGACGTCATGAGCCACCACGAA ATTTGCTGTAGCCAGAAGCAAACACCGCTAGTGGTGCAATAGTAGATATA TTGTAGCTCAAGATGAGCGCAATATGTTTCTTGTGCTTTGGTCAGGTAGT GACTTAATGTGCTCCACGACACTTGTTGTGCGTTGAAAGTCTCCTACATT CTCGAACTCAGAGTGTACGCGGCAAATGCCTGAACTTTTGTACCCTGATT AAGATACCTGGCGCTGGTTACAGATCAATGGTAGACTACTTCTTGCGCGA TTCGTTTTCTGTTACGACAATTCAAACACAGCGTCCCTCACTGGTTGCAA AATAATGGCAGCGATGAGTGCGTGCGTCTGAAGAACCGCGTGGTCAACGC GGAGATCCTGGAGAACACTATTGAGAGCTGTGGTGTACACCACACCCTGT TTGAGTCGGAAGGCAAGAATGGCGAGGGCATCTACATCGGCACCTCGAGC AGCCAGGTGAAACCAATCACCTGCCCTGACGTTGCCATGCCCTTGCGTTA GACAGTAGTCAGTTACATTACTACTTGTTGAAAGCACAGGCGAGATTATG GGGTATAGGATGTAAGAGTAAAAATCTTCACAAAACGTGGTACCGTAGAA GAGGCTACATACTACCGAGCATGATTCCTAAAATTAATAGATACGAAGCA TATCACACGCTCCAATTTAATTGGATGAAGCCCTACTTCCGGAAGAGATT TGACAAACGATCTCGTCCGAGGTTCAGCGGCGCAGGGCTTTAACAGGTTT ACGCCGCTTCTCCCCTTCACCACTCAGCTCTTCCTAAACTTCTTAATATG GAGTCAGCTAGCTCTCCACTGCATCTTTGCAGGTTTCTTATTCAGTACAA TGTTGTACAAGTCTTATTTGTCCTACCTCCTGTTTTGCCTTGTTTCTAGT CTCGTGCTATCATCCTTATACAGCCGGAACTTCCACCATGCCCACTTCAT ATCAACAGTGGGTGTGGGAAAAAGAGGCACACATTAATCGGTCCTTGGTG ACCTGCCAAGGCAGCACTCGTTCGGAACTACCTTGAGATTTACTGGCCCT GTGCCGGCGGAC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig118:607212..609023-

>mRNA_A-nodosum_M_contig118.31.1 ID=mRNA_A-nodosum_M_contig118.31.1|Name=mRNA_A-nodosum_M_contig118.31.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=462bp|location=Sequence derived from alignment at A-nodosum_M_contig118:607212..609023- (Ascophyllum nodosum dioecious)
ATGCATGACCACCATGCTGAGCGTGGGACACGACGACAGCAGTTTACAGC
ACCATCCAACGATGACAAGACAACGTCGTGCTCTTTCAAGGTTCAAGATC
AGTCAGCAGTATCGCTCTATCCTTTCTCGATGCTGCAGGGTTTTTCGGTG
GATGGAAAAGTCGGGGATGGTTCTGATTCCGAGGACTATATAAAGAAGTG
CGTGTATGTCGACGGCGAAGACTCTGAGCTCGATGGATTCGTCATGGAAG
GCCTCTCCATTAAAAATTGCGGCGATGAGTGCGTGCGTCTGAAGAACCGC
GTGGTCAACGCGGAGATCCTGGAGAACACTATTGAGAGCTGTGGTGTACA
CCACACCCTGTTTGAGTCGGAAGGCAAGAATGGCGAGGGCATCTACATCG
GCACCTCGAGCAGCCAGGTGAAACCAATCACCTGCCCTGACGTTGCCATG
CCCTTGCGTTAG
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