mRNA_A-nodosum_M_contig118.31.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig118.31.1 vs. uniprot
Match: D7FXR9_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXR9_ECTSI) HSP 1 Score: 120 bits (301), Expect = 1.740e-26 Identity = 58/105 (55.24%), Postives = 77/105 (73.33%), Query Frame = 1
Query: 571 YPFSMLQGFSVDGKVGDG-SDSEDYIKKCVYVDGEDSE----LDGFVMEGLSIKNCGDECVRLKNRVVNAEILENTIESCGVHHTLFESEGKNGEGIYIGTSSSQ 870
+ F L+GFSV+GK+G +D ++ KCVYV+G + LDGFVME + ++NCG ECVRLK+ VVNA++ NTI +CGVH +F SE KNGEG+YIGTSS+Q
Sbjct: 112 HSFITLKGFSVEGKIGSNDTDQASWVNKCVYVEGPGANSSAVLDGFVMEDMVVQNCGGECVRLKDSVVNAQVTGNTISNCGVHDYMFNSEDKNGEGVYIGTSSTQ 216
BLAST of mRNA_A-nodosum_M_contig118.31.1 vs. uniprot
Match: A0A6H5KT05_9PHAE (Beta_helix domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KT05_9PHAE) HSP 1 Score: 117 bits (293), Expect = 9.150e-26 Identity = 53/99 (53.54%), Postives = 74/99 (74.75%), Query Frame = 1
Query: 586 LQGFSVDGKVGDGSDSEDYIKKCVYVDGE----DSELDGFVMEGLSIKNCGDECVRLKNRVVNAEILENTIESCGVHHTLFESEGKNGEGIYIGTSSSQ 870
L+GFSVDGK+ D ++E Y+ KCV+V+G D L+GFVM+ + ++NCGDECVRLK+ +V A I +N I+ CGV ++ + GKNGEGIY+GTSS+Q
Sbjct: 91 LEGFSVDGKISDDDEAESYVDKCVFVEGTSTSGDERLEGFVMQDVYVQNCGDECVRLKSFIVGAVISDNVIQDCGVRDFVYGNSGKNGEGIYVGTSSTQ 189
BLAST of mRNA_A-nodosum_M_contig118.31.1 vs. uniprot
Match: A0A6H5LEX7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LEX7_9PHAE) HSP 1 Score: 119 bits (298), Expect = 1.330e-25 Identity = 59/111 (53.15%), Postives = 80/111 (72.07%), Query Frame = 1
Query: 553 QSAVSLYPFSMLQGFSVDGKVGDG-SDSEDYIKKCVYVDGEDSE----LDGFVMEGLSIKNCGDECVRLKNRVVNAEILENTIESCGVHHTLFESEGKNGEGIYIGTSSSQ 870
+S + + F L+GF+V+GKVG +D ++ KCVYV+G S+ LDGFVME + ++NCG ECVRLK+ VVNA++ NTI +CGVH +F S KNGEG+YIGTSS+Q
Sbjct: 106 RSVLITHSFITLKGFTVEGKVGTSDTDEASWVNKCVYVEGPGSQSSAVLDGFVMEDMIVQNCGGECVRLKDSVVNAQVTGNTISNCGVHDFMFNSGDKNGEGVYIGTSSTQ 216
BLAST of mRNA_A-nodosum_M_contig118.31.1 vs. uniprot
Match: D7FXR8_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXR8_ECTSI) HSP 1 Score: 119 bits (299), Expect = 2.300e-25 Identity = 57/111 (51.35%), Postives = 81/111 (72.97%), Query Frame = 1
Query: 553 QSAVSLYPFSMLQGFSVDGKVGDG-SDSEDYIKKCVYVDGEDSE----LDGFVMEGLSIKNCGDECVRLKNRVVNAEILENTIESCGVHHTLFESEGKNGEGIYIGTSSSQ 870
+S + + F L+GF+V+GK+G +D ++ KCVYV+G S+ LDGFVME + ++NCG ECVRLK+ V+NA+++ NTI +CGVH +F S KNGEG+YIGTSS+Q
Sbjct: 106 RSVLITHSFITLKGFTVEGKIGTSDTDEASWVNKCVYVEGPGSQSSAVLDGFVMEDMIVQNCGGECVRLKDSVINAQVMGNTISNCGVHDYMFNSGDKNGEGVYIGTSSTQ 216
BLAST of mRNA_A-nodosum_M_contig118.31.1 vs. uniprot
Match: Q6XM06_9PHYC (FirrV-1-B30 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM06_9PHYC) HSP 1 Score: 99.8 bits (247), Expect = 1.590e-18 Identity = 46/113 (40.71%), Postives = 71/113 (62.83%), Query Frame = 1
Query: 571 YPFSMLQGFSVDGKVGDGSDSEDYIKKCVYVDG-------------EDSELDGFVMEGLSIKNCGDECVRLKNRVVNAEILENTIESCGVHHTLFESEGKNGEGIYIGTSSSQ 870
+ ++ L+GF+V GK G+D DY+ KC++V G +S + G ++E + +++CG EC+RL++ V +AE+ N IE CG H LF+ GKNGE IY+GTSS+Q
Sbjct: 109 HSYTTLRGFTVSGKRNSGNDPSDYVDKCIFVMGISSPEIERTSGIEYESSITGVIIEDMEVEDCGGECIRLRSFVTHAEVTGNRIERCGRHDYLFDGAGKNGEAIYVGTSSNQ 221
BLAST of mRNA_A-nodosum_M_contig118.31.1 vs. uniprot
Match: UPI00036AEC55 (right-handed parallel beta-helix repeat-containing protein n=1 Tax=Hahella ganghwensis TaxID=286420 RepID=UPI00036AEC55) HSP 1 Score: 97.1 bits (240), Expect = 2.550e-18 Identity = 48/97 (49.48%), Postives = 65/97 (67.01%), Query Frame = 1
Query: 586 LQGFSVDGKVGDGSDSEDYIKKCVYVDGEDSELD--GFVMEGLSIKNCGDECVRLKNRVVNAEILENTIESCGVHHTLFESEGKNGEGIYIGTSSSQ 870
L+ F++DG+VG G+ ED+ VYV G + + GFVM +S+KN G ECVRL+ V AEI +NT +CGV+ F + GKNGE IY+GTSS+Q
Sbjct: 122 LRNFTIDGQVGSGNTMEDFRDILVYVKGNEPQQGPTGFVMRAMSLKNAGGECVRLRYYVTEAEIFDNTFYNCGVYDFKFNNGGKNGEAIYVGTSSNQ 218
BLAST of mRNA_A-nodosum_M_contig118.31.1 vs. uniprot
Match: A0A261GHV7_9GAMM (DUF1565 domain-containing protein n=1 Tax=Hahella sp. CCB-MM4 TaxID=1926491 RepID=A0A261GHV7_9GAMM) HSP 1 Score: 95.9 bits (237), Expect = 7.040e-18 Identity = 47/97 (48.45%), Postives = 62/97 (63.92%), Query Frame = 1
Query: 586 LQGFSVDGKVGDGSDSEDYIKKCVYVDGEDSEL--DGFVMEGLSIKNCGDECVRLKNRVVNAEILENTIESCGVHHTLFESEGKNGEGIYIGTSSSQ 870
L+ F++DG VG G+ EDY K ++V G + + +GFVM + I+N G ECVRL+ V AEI NT +CG + F+ GKNGE IYIGTSS Q
Sbjct: 128 LRNFTIDGLVGKGNGPEDYRKSLIFVQGTEHKQGPEGFVMRSMRIRNAGGECVRLRYHVTRAEIFGNTFYNCGAYDFQFDGRGKNGEAIYIGTSSEQ 224
BLAST of mRNA_A-nodosum_M_contig118.31.1 vs. uniprot
Match: A0A0G0APH1_9BACT (Beta_helix domain-containing protein n=2 Tax=Candidatus Moranbacteria TaxID=1752737 RepID=A0A0G0APH1_9BACT) HSP 1 Score: 89.7 bits (221), Expect = 1.090e-15 Identity = 43/104 (41.35%), Postives = 66/104 (63.46%), Query Frame = 1
Query: 571 YPFSMLQGFSVDGKVGDGSDSEDYIKKCVYVDGEDSE--LDGFVMEGLSIKNCGDECVRLKNRVVNAEILENTIESCGVHHTLFESEGKNGEGIYIGTSSSQVK 876
+ + +L GF+VDG G +E Y K +YV G++ + + G ++ ++IKN G EC+RL+ EI+ N IE+CGV F+ +GKNGEGIY+GT+ Q+K
Sbjct: 160 HDYIILDGFTVDGFYGSSDKAESYRDKLIYVLGKEKKNGVTGLRIKNMNIKNAGGECIRLRYFATKNEIVNNLIENCGVEDFKFDGDGKNGEGIYVGTAPEQLK 263
BLAST of mRNA_A-nodosum_M_contig118.31.1 vs. uniprot
Match: A0A0G0X4X9_9BACT (Secreted protein n=1 Tax=Candidatus Daviesbacteria bacterium GW2011_GWA2_40_9 TaxID=1618424 RepID=A0A0G0X4X9_9BACT) HSP 1 Score: 89.4 bits (220), Expect = 1.660e-15 Identity = 47/109 (43.12%), Postives = 67/109 (61.47%), Query Frame = 1
Query: 586 LQGFSVDGKVGDGSDSEDYIKKCVYVDGEDSE--LDGFVMEGLSIKNCGDECVRLKNRVVNAEILENTIESCGVHHTLFESEGKNGEGIYIGTSSSQV----KPITCPD 894
L+GF++DG G S S Y K +YV G++++ + G + G+++KN G EC+RL+ N EI NTI +CGV+ F GKNGEGIYIGT+ Q+ P + PD
Sbjct: 183 LRGFTIDGLFGSSSSSSGYRDKLLYVQGKETKSGVTGLKVLGMTLKNAGGECIRLRYFAQNNEIAGNTITNCGVYDFKFNGGGKNGEGIYIGTAPEQLGDGKNPTSDPD 291
BLAST of mRNA_A-nodosum_M_contig118.31.1 vs. uniprot
Match: A0A1F6HQF6_9BACT (DUF1565 domain-containing protein n=1 Tax=Candidatus Levybacteria bacterium RIFCSPHIGHO2_01_FULL_40_10 TaxID=1798593 RepID=A0A1F6HQF6_9BACT) HSP 1 Score: 87.0 bits (214), Expect = 4.620e-15 Identity = 41/99 (41.41%), Postives = 66/99 (66.67%), Query Frame = 1
Query: 586 LQGFSVDGKVGDGSDSEDYIKKCVYVDGEDSE--LDGFVMEGLSIKNCGDECVRLKNRVVNAEILENTIESCGVHHTLFESEGKNGEGIYIGTSSSQVK 876
L GFS+DG GD + + K +YV G++++ + G ++ ++ KN G EC+RL+ N EI +TI +CGV++ +F+ +GKNGEGIYIGT+ Q++
Sbjct: 99 LDGFSIDGLYGDLNRRSGFRDKLLYVQGKEAKNGVTGLKVQNMTFKNAGGECIRLRYFAHNNEISNSTISNCGVYYFVFKEDGKNGEGIYIGTAPEQLR 197 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig118.31.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig118.31.1 >prot_A-nodosum_M_contig118.31.1 ID=prot_A-nodosum_M_contig118.31.1|Name=mRNA_A-nodosum_M_contig118.31.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=154bp MHDHHAERGTRRQQFTAPSNDDKTTSCSFKVQDQSAVSLYPFSMLQGFSVback to top mRNA from alignment at A-nodosum_M_contig118:607212..609023- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig118.31.1 ID=mRNA_A-nodosum_M_contig118.31.1|Name=mRNA_A-nodosum_M_contig118.31.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1812bp|location=Sequence derived from alignment at A-nodosum_M_contig118:607212..609023- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig118:607212..609023- >mRNA_A-nodosum_M_contig118.31.1 ID=mRNA_A-nodosum_M_contig118.31.1|Name=mRNA_A-nodosum_M_contig118.31.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=462bp|location=Sequence derived from alignment at A-nodosum_M_contig118:607212..609023- (Ascophyllum nodosum dioecious)back to top |