mRNA_A-nodosum_M_contig118.3.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig118.3.1
Unique NamemRNA_A-nodosum_M_contig118.3.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig118.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig118contigA-nodosum_M_contig118:20417..21398 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size736
Hectar predicted targeting categoryother localisation
Exons2
Cds size462
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866595.503773-UTR-A-nodosum_M_contig118:20416..205361680866595.503773-UTR-A-nodosum_M_contig118:20416..20536Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig118 20417..20536 +
1680866595.512977-UTR-A-nodosum_M_contig118:20782..208161680866595.512977-UTR-A-nodosum_M_contig118:20782..20816Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig118 20783..20816 +
1680866595.5333176-UTR-A-nodosum_M_contig118:21278..213981680866595.5333176-UTR-A-nodosum_M_contig118:21278..21398Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig118 21279..21398 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866595.5217483-CDS-A-nodosum_M_contig118:20816..212781680866595.5217483-CDS-A-nodosum_M_contig118:20816..21278Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig118 20817..21278 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig118.3.1prot_A-nodosum_M_contig118.3.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig118 20817..21278 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig118.3.1

>prot_A-nodosum_M_contig118.3.1 ID=prot_A-nodosum_M_contig118.3.1|Name=mRNA_A-nodosum_M_contig118.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=154bp
MAADTLLDLVARVLRASGTASCMFLGITKDFASSSLLVTSCMCPFPYLAC
VYEFYILELPVLGSRSPFMATRKHRQVCKINYEVCQMLPEAHSTKSQYCG
IISIRSWFISRPNRIYYRLIVREWRMMIKCRENTVFSDVEEAAHRRMTGA
GEG*
back to top

mRNA from alignment at A-nodosum_M_contig118:20417..21398+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig118.3.1 ID=mRNA_A-nodosum_M_contig118.3.1|Name=mRNA_A-nodosum_M_contig118.3.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=982bp|location=Sequence derived from alignment at A-nodosum_M_contig118:20417..21398+ (Ascophyllum nodosum dioecious)
AAGCCGTCGCACTAGAGTCGGCTGCAGAAGCGGTGACTATGCCGGAGATG
GAGGGGTCAAAGTCTCCCTTCAAGCGAGATTCTTCTGTGAAGACAGAGGT
GCAGGTCTCCTTGTAGTCAGGTATACTACACGTGGCCGCAAGTCTATCCA
CTTGAATATCAGTTTTATTTCAAATAGGTACACCCCGTCCGTCTGTTAAT
GGATGTCGCGGTAAGTTTCGTCGCGAGGTGTGGGTTCAGCTCATGGCCCC
TTGTCCCTCTTAGATACTTAAGACCTTGCAAGCTGCGGCCATCCTTAACG
AAACACGCCACTCGTGCTTACTTCCACACGACGTTGTGCTATCGTTCTTC
CATCTTTTGAACTCAGGTCCTCTGGTCAAGAGCGTGGCAATGATACCTCT
ATGGCCGCAGACACACTGCTGGATCTTGTGGCAAGGGTCCTGCGTGCTTC
CGGAACAGCTTCCTGCATGTTCCTTGGTATTACGAAGGATTTTGCGTCGA
GCTCTTTACTTGTTACTTCATGTATGTGTCCCTTTCCATACCTAGCATGC
GTGTACGAGTTTTACATCCTTGAACTGCCGGTACTTGGTTCTAGAAGTCC
TTTCATGGCAACCAGGAAGCATAGGCAGGTCTGTAAAATTAACTACGAGG
TATGTCAGATGTTGCCCGAAGCACACTCGACAAAGTCCCAATATTGCGGT
ATTATTTCGATACGTTCTTGGTTCATTTCCCGCCCAAATCGAATTTACTA
CCGATTAATTGTGAGAGAGTGGAGAATGATGATTAAATGCAGGGAGAATA
CTGTGTTCTCTGATGTAGAGGAAGCAGCGCATCGTCGCATGACTGGCGCG
GGAGAGGGGTAGGAAACACTTGGTAGTGTAACCTATAACTCAAGGCCGTT
GGACCGACAGTGGGAATCTTTTTATCGGAATCGCGTTTTTCTCTTGCCAT
TATTTCTATCAGCTACAACACTTAGCTCGGAC
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig118:20417..21398+

>mRNA_A-nodosum_M_contig118.3.1 ID=mRNA_A-nodosum_M_contig118.3.1|Name=mRNA_A-nodosum_M_contig118.3.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=462bp|location=Sequence derived from alignment at A-nodosum_M_contig118:20417..21398+ (Ascophyllum nodosum dioecious)
ATGGCCGCAGACACACTGCTGGATCTTGTGGCAAGGGTCCTGCGTGCTTC
CGGAACAGCTTCCTGCATGTTCCTTGGTATTACGAAGGATTTTGCGTCGA
GCTCTTTACTTGTTACTTCATGTATGTGTCCCTTTCCATACCTAGCATGC
GTGTACGAGTTTTACATCCTTGAACTGCCGGTACTTGGTTCTAGAAGTCC
TTTCATGGCAACCAGGAAGCATAGGCAGGTCTGTAAAATTAACTACGAGG
TATGTCAGATGTTGCCCGAAGCACACTCGACAAAGTCCCAATATTGCGGT
ATTATTTCGATACGTTCTTGGTTCATTTCCCGCCCAAATCGAATTTACTA
CCGATTAATTGTGAGAGAGTGGAGAATGATGATTAAATGCAGGGAGAATA
CTGTGTTCTCTGATGTAGAGGAAGCAGCGCATCGTCGCATGACTGGCGCG
GGAGAGGGGTAG
back to top