mRNA_A-nodosum_M_contig118.26.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig118.26.1 vs. uniprot
Match: A0A2K3MAN7_TRIPR (Retrotransposon protein putative Ty1-copia subclass (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3MAN7_TRIPR) HSP 1 Score: 288 bits (737), Expect = 5.310e-89 Identity = 172/423 (40.66%), Postives = 250/423 (59.10%), Query Frame = 1
Query: 10 EPRNRRQAMESHEWDEWRKAEETEMLGMVENCVYDQVARPKDKLVIGTKMLYKRKIGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATAAAKDGELRHFDA*QALLKADIDEEIYIEIPEEFQKFP--GAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKVDPCVFRKVVDGEAEIVVVVHVDDILAHVKDQATMNRFAAELGRKFKLKDMGDAEYYMGCHITRNRKARELKFDQHLYVESMVKRFNVKKEAK--IPAASGVQTLSKVDEPQNPEEKEEMKMFPYREAVGALMWAATMTRPDIACAVRAVARFCENPGLAHKKAVMKIFQYLLHTKEWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALSE 1266
+P++ +AM+S + D+W +A E+EM M N V+ V K IG K +YK+KIG DGKVE YK RLVA+G+ Q EG+ Y E +SP SIR+LLA AA D E+ D A L ++ EE+Y+ PE F V +L ++IYGL QA R WN +F + + F + + +PCV++K+ G + I +V++VDDIL D +M L +F +KD+G+A Y +G I R+R R L Q +Y+++++KR+N++K + +P GV +LS+ + P+ EE+E M PY AVGA+M+ T TRPD+A A+ +R+ NPG H K V I +YL TK+ + YG L ++ YTD+ F + D +S+SG V L GAISW S Q A T+EAEY+A SE
Sbjct: 92 DPKSYEEAMQSLDHDKWIRAMESEMESMKINKVWTLVEASKGIKPIGCKWVYKKKIGADGKVETYKARLVAKGYRQKEGIDYDETFSPVAMIKSIRILLAIAAYYDYEIWQMDVKTAFLNGELKEEVYMTQPEGFTSLSDHNKVCKLQRSIYGLKQASRSWNIRFNNTIEKFNFVKCEEEPCVYKKI-SGSSIIFLVLYVDDILLFGNDIPSMQSTKVWLSEQFSMKDLGEAAYILGIKIYRDRSKRLLGLSQSMYIDTILKRYNMEKSKRGYLPVGMGV-SLSRENCPKTLEERERMSRVPYASAVGAIMYTMTCTRPDVAYALGVTSRYQANPGEEHWKVVKTILKYLRRTKDQFLIYGNSE--LSLKGYTDASFASDKDDSKSISGYVFTLNGGAISWKSSKQATVADSTTEAEYIAASE 510
BLAST of mRNA_A-nodosum_M_contig118.26.1 vs. uniprot
Match: A0A6A3Q908_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=8 Tax=Phytophthora TaxID=4783 RepID=A0A6A3Q908_9STRA) HSP 1 Score: 282 bits (721), Expect = 1.160e-85 Identity = 168/433 (38.80%), Postives = 249/433 (57.51%), Query Frame = 1
Query: 13 PRNRRQAMESHEWDEWRKAEETEMLGMVENCVYDQVARPKDKLVIGTKMLYKRKIGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATAAAKDGELRHFDA*QALLKADIDEEIYIEIPEEFQKF---------PGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKVDPCVFRKVVDGEAEIVVVVHVDDILAHVKDQATMNRFAAELGRKFKLKDMGDAEYYMGCHITRNRKARELKFDQHLYVESMVKRFNVK--KEAKIPAASGVQTLSKVDEPQNPEEKEEMKMFPYREAVGALMWAATMTRPDIACAVRAVARFCENPGLAHKKAVMKIFQYLLHTKEWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALSEVVKD 1278
P+ +A H+ DEW+KA +E+ ++ N + V +P + IG + ++ K + G+V +YK RLVA+G+ Q G+ Y E YSP S+R +LA A+ E+ D A L +++EEIY+E+PE ++ V L +++YGL QA R WN + + GFE A DPCV+ + +GE E +V ++VDD+L + +A + A + KF++KD+G A + +G I + + R L Q Y ES++K+F + K P GVQ L+K DEPQ E+K +MK PYR VG+LM+ A TRPDI+ AV ++RF ENPG H A +K+ +YLL TK+ GI Y G G EAY+D+D+ D RRSVSG +LML + W S Q+ A ++EAEY+ALS+ VK+
Sbjct: 66 PKTYAEATTRHDQDEWKKAIASELKSLIVNKTWKLVPKPAHQRPIGCRWVFALKRNEKGQVVRYKARLVAKGYSQRHGIDYEEAYSPVAYLNSVRAMLAKCGAEGMEIEQCDVDTAFLYGELEEEIYMELPEGLRELLDLAEAEGEDDVVCMLLQSLYGLKQASRVWNETIDKHLKSTGFEPADADPCVYTRG-EGEGECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDLGRARFIVGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGVQ-LTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQPEAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEAEYMALSDCVKE 495
BLAST of mRNA_A-nodosum_M_contig118.26.1 vs. uniprot
Match: A0A2N9IUC8_FAGSY (Integrase catalytic domain-containing protein n=2 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9IUC8_FAGSY) HSP 1 Score: 285 bits (728), Expect = 1.840e-84 Identity = 178/428 (41.59%), Postives = 250/428 (58.41%), Query Frame = 1
Query: 7 SEPRNRRQAMESHEWDEWRKAEETEMLGMVENCVYDQVARPKDKLVIGTKMLYKRKIGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATAAAKDGELRHFDA*QALLKADIDEEIYIEIPEEFQKF--PGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKVDPCVFRKVVDGEAEIVVVVHVDDILAHVKDQATMNRFAAELGRKFKLKDMGDAEYYMGCHITRNRKARELKFDQHLYVESMVKRFNVKKEAK--IPAASGVQTLSKVDEPQNPEEKEEMKMFPYREAVGALMWAATMTRPDIACAVRAVARFCENPGLAHKKAVMKIFQYLLHTKEWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALSEVVKD 1278
++P ++AM + + W+KA E+EM M N V+ V +P+ IG K +YKRK+G GKVE YK RLVA+G+ Q G+ Y E +SP SIR+LL+ AA D E+ D A L +I EEIY++ P F V +L K+IYGL QA R WN +F + + + GF Q +PCV++KV G ++++VDDIL D M+ L F +KD+G+A Y +G + R+RK R L Q Y++ ++ RF+++ K P GV LSK P+ EE+E+M+ PY AVG+LM+A TRPDI AV V+R+ NPG H AV I +YL TK + + +G + L ++ YTDSDF + +D R+S+SG V L KGAISW S Q+ TA T EAEY+A SE K+
Sbjct: 313 NDPVTYQEAMNDKDVEHWKKAMESEMDSMYTNQVWTLVDKPEGIKPIGCKWIYKRKLGPTGKVETYKVRLVAKGYTQKAGIDYEETFSPVAMLKSIRILLSIAAHYDYEIWQMDVKTAFLNGNIREEIYMDQPVGFISHGQESKVCKLMKSIYGLKQASRSWNIRFDEAIKSFGFSQNIDEPCVYKKV-SGRIITFLILYVDDILLIGNDVGAMSSIKMWLSSHFAMKDLGEASYILGIKLFRDRKKRLLGLSQVNYIDKILARFSMQDSKKGFSPFRHGVH-LSKNMCPKTQEEREKMRNCPYASAVGSLMYAMLCTRPDICYAVSIVSRYQSNPGPEHWTAVKHILKYLNRTKHYFLVFGSKD--LNIQGYTDSDFQSDIDDRKSISGFVFTLGKGAISWRSCKQDTTADSTIEAEYIAASEAAKE 736
BLAST of mRNA_A-nodosum_M_contig118.26.1 vs. uniprot
Match: A0A438HUL4_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Vitis vinifera TaxID=29760 RepID=A0A438HUL4_VITVI) HSP 1 Score: 277 bits (708), Expect = 1.940e-84 Identity = 168/417 (40.29%), Postives = 237/417 (56.83%), Query Frame = 1
Query: 28 QAMESHEWDEWRKAEETEMLGMVENCVYDQVARPKDKLVIGTKMLYKRKIGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATAAAKDGELRHFDA*QALLKADIDEEIYIEIPEEFQKFPGA--VGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKVDPCVFRKVVDGEAEIVVVVHVDDILAHVKDQATMNRFAAELGRKFKLKDMGDAEYYMGCHITRNRKARELKFDQHLYVESMVKRFNVKKEAK--IPAASGVQTLSKVDEPQNPEEKEEMKMFPYREAVGALMWAATMTRPDIACAVRAVARFCENPGLAHKKAVMKIFQYLLHTKEWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALSE 1266
Q +S ++W KA + EM M +N V+D V PK IG K ++K K G + +YK RLVA+GF Q EG+ Y E +SP S S R+++A A D EL D A L +IDE IY+ PE F+ V RL ++IYGL QA R W KF +T+ GF++ VD C++ K G I++V++VDDIL D ++ L KF +KD+G+A + +G I R+R L Q Y++ ++ RF + A P A G S P+N EK++M+ FPY AVG+LM+A TRPDIA V + R+ NPG+ H K ++ +YL TK++ +TY + L + AY+DSDF CLD+RRS SG + MLA GA+SW S Q + A+ T EAE++A E
Sbjct: 12 QVKQSSNSEKWIKAMKDEMKSMKDNGVWDLVELPKGVKPIGCKWIFKTKRDSKGNIVRYKARLVAKGFTQKEGIDYKETFSPVSSKDSFRIIMALVAHYDLELHQMDVKTAFLNGNIDETIYMVQPENFESNDSKQLVCRLKRSIYGLKQASRQWYRKFDQVITSFGFKENTVDQCIYLKF-SGSKFIILVLYVDDILLASSDVGLLHETMRFLSSKFDMKDLGNASFVLGIQIHRDRSRGILGLSQKAYIDKVLSRFGMSNYAPGDTPVAKG-DKFSLHQCPKNELEKKDMERFPYASAVGSLMYAQVCTRPDIAYIVGMLGRYLSNPGMDHWKKAKRVMRYLQRTKDYMLTYR-RSSHLEIVAYSDSDFAGCLDSRRSTSGCIFMLAGGAVSWKSVKQTLVASSTMEAEFIACYE 425
BLAST of mRNA_A-nodosum_M_contig118.26.1 vs. uniprot
Match: UPI001131160E (DDE-type integrase/transposase/recombinase n=2 Tax=Escherichia coli TaxID=562 RepID=UPI001131160E) HSP 1 Score: 285 bits (728), Expect = 2.750e-84 Identity = 170/410 (41.46%), Postives = 244/410 (59.51%), Query Frame = 1
Query: 58 WRKAEETEMLGMVENCVYDQVARPKDKLVIGTKMLYKRKIGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATAAAKDGELRHFDA*QALLKADIDEEIYIEIPEEFQKFPGA-VGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKVDPCVFRKVVDGEAEIVVVVHVDDILAHVKDQATMNRFAAELGRKFKLKDMGDAEYYMGCHITRNRKARELKFDQHLYVESMVKRFNV--KKEAKIPAASGVQTLSKVDEPQNPEEKEEMKMFPYREAVGALMWAATMTRPDIACAVRAVARFCENPGLAHKKAVMKIFQYLLHTKEWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALSEVVKD 1278
W A ++E+ M +N V+D V P+ + IG K ++K+KIG DGKVE YK RLVA+GF Q +G+ Y E +SP SIR+LLA AA D E+ D L I+E I++E P+ F+ G+ V +L ++IYGL QA R WN +F + + + GF + + +PCV++KV D A +V++VDDIL D + L F +KD+G+A Y +G I R+R R + Q LY+E ++KRFN+ K +P G+ LSK P+ PEE+++M PY A+G+LM+A TRP+IA AV +R+ NPGL H A+ I +YL TK+ + YGG L ++ YTDSDF + +D R+S S V + GA+SW S Q TA T EAEY+A S+ K+
Sbjct: 414 WIDAMKSEIDSMYKNQVWDLVDPPEGIVPIGNKWVFKKKIGSDGKVETYKARLVAKGFRQRQGIDYEETFSPVAMLKSIRILLAIAAYYDYEIWQMDVKTTFLNGYIEENIFMEQPKGFESQDGSKVCKLKRSIYGLKQASRSWNIRFDEAIKSFGFIKNEDEPCVYKKVSDS-AITFLVLYVDDILLMGNDTGMLTTIKVWLSNTFSMKDLGEATYILGIRIYRDRAKRIIGLSQSLYLEKVLKRFNMLDSKRGLLPVRHGIH-LSKEMSPKTPEERDKMARIPYASAIGSLMYAMLCTRPNIAYAVSLTSRYQSNPGLEHWIAIKNILKYLRRTKDLFLIYGGGD--LQLDGYTDSDFQSDIDDRKSTSRYVFICNGGAVSWKSFKQSTTADSTIEAEYIAASDAAKE 819
BLAST of mRNA_A-nodosum_M_contig118.26.1 vs. uniprot
Match: A0A438JMN5_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=5 Tax=Vitis vinifera TaxID=29760 RepID=A0A438JMN5_VITVI) HSP 1 Score: 275 bits (703), Expect = 6.880e-84 Identity = 165/415 (39.76%), Postives = 242/415 (58.31%), Query Frame = 1
Query: 34 MESHEWDEWRKAEETEMLGMVENCVYDQVARPKDKLVIGTKMLYKRKIGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATAAAKDGELRHFDA*QALLKADIDEEIYIEIPEEFQKFPGA--VGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKVDPCVFRKVVDGEAEIVVVVHVDDILAHVKDQATMNRFAAELGRKFKLKDMGDAEYYMGCHITRNRKARELKFDQHLYVESMVKRFNVKKEAK--IPAASGVQTLSKVDEPQNPEEKEEMKMFPYREAVGALMWAATMTRPDIACAVRAVARFCENPGLAHKKAVMKIFQYLLHTKEWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALSE 1266
MES + +W +A E+ M N V+D + P + +G K ++K K G +E++K RLVA+GF Q EG+ Y + +SP S+R+++A A D EL D A L ++DE+IY+E PE F K V +L K+IYGL QA R W KF + +T+ GF++ +D C++ KV G I ++++VDDIL D + L + F + DMG+A Y + I R+R L Q Y++ +++RFN++ + P G LSK+ P+N E+E+MK PY AVG+LM+A T TRPDI+ AV + R+ +PG H KA K+ +YL TK++ +TY + L + Y+DSD+G CLD+ +S SG V MLA GAISW S Q +TA+ T EAE+VA E
Sbjct: 1 MESDDSSKWMEAMNEELKSMAHNGVWDLIELPNNCKPVGCKWVFKTKRDAKGNIERFKARLVAKGFTQKEGIDYKDTFSPVSKKDSLRIIMALVAHFDLELHQMDVKTAFLNGNLDEDIYMEQPEGFAKKGNEHLVCKLKKSIYGLKQASRQWYIKFNNTITSFGFKENILDQCIYLKV-SGSKFIFLILYVDDILLASSDLGLLRETKEYLSKNFHMVDMGEANYVISIEIFRDRSRGVLGLSQKGYIDRVLERFNMQSCSSGIAPILKG-DKLSKMQCPRNNIEREQMKKIPYASAVGSLMYAQTCTRPDISFAVGMLGRYQSDPGFEHWKAAKKVMRYLQGTKDYMLTYK-RSEQLEVVGYSDSDYGGCLDSLKSTSGFVFMLANGAISWKSEKQSITASSTMEAEFVACFE 412
BLAST of mRNA_A-nodosum_M_contig118.26.1 vs. uniprot
Match: A0A2K3LA50_TRIPR (Putative retrotransposon Ty1-copia subclass protein (Fragment) n=2 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3LA50_TRIPR) HSP 1 Score: 283 bits (724), Expect = 1.170e-83 Identity = 174/425 (40.94%), Postives = 242/425 (56.94%), Query Frame = 1
Query: 7 SEPRNRRQAMESHEWDEWRKAEETEMLGMVENCVYDQVARPKDKLVIGTKMLYKRKIGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATAAAKDGELRHFDA*QALLKADIDEEIYIEIPEEFQKFPGA--VGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKVDPCVFRKVVDGEAEIVVVVHVDDILAHVKDQATMNRFAAELGRKFKLKDMGDAEYYMGCHITRNRKARELKFDQHLYVESMVKRFNVKK--EAKIPAASGVQ-TLSKVDEPQNPEEKEEMKMFPYREAVGALMWAATMTRPDIACAVRAVARFCENPGLAHKKAVMKIFQYLLHTKEWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALSE 1266
++P QAM E + W A + EM MV N V+D V P IG K ++K K G +E+YK RLVA+GF Q EG+ YTE +SP S R+++A A + EL D A L ++EE+Y++ PE F G V +LN++IYGL QA R W KF + +T+ GFE+ +D C+++KV G +V++VDDIL D+ + L R F +KDMG+A Y +G I R+R L Q Y+ +++RFN+K + P G + LS+ PQN E+E MK PY AVG+LM+A TRPDIA AV + R+ NPG+ H KA K+ +YL TK + + Y L + Y+DSD+ C+DTR+S SG V MLA GA+SW S Q +TA T EAE+V+ E
Sbjct: 431 NDPETFSQAMSCKESNLWHDAMKEEMNSMVSNKVWDLVTLPNGVKAIGCKWVFKTKRDSQGNIERYKARLVAKGFTQREGIDYTETFSPVSKKDSFRVIMALVAHFNFELHQMDVKTAFLNGSLEEEVYMKQPEGFYSSEGENLVCKLNRSIYGLKQASRQWYLKFHEVITSFGFEENVMDQCIYQKV-SGSHICFLVLYVDDILLATNDKGMLYEVKQFLSRNFDMKDMGEASYVIGIKIHRDRNRGILGLSQEAYINKVLERFNMKNCSPSVAPIVKGDRFELSQC--PQNDFEREHMKNIPYASAVGSLMYAQVCTRPDIAYAVGVLGRYQSNPGVDHWKAAKKVMRYLQGTKNFMLMYKRTD-NLEVIGYSDSDYAGCIDTRKSTSGYVFMLASGAVSWRSAKQTLTATSTMEAEFVSCFE 851
BLAST of mRNA_A-nodosum_M_contig118.26.1 vs. uniprot
Match: A0A438IPK0_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Vitis vinifera TaxID=29760 RepID=A0A438IPK0_VITVI) HSP 1 Score: 280 bits (716), Expect = 2.220e-83 Identity = 168/417 (40.29%), Postives = 245/417 (58.75%), Query Frame = 1
Query: 28 QAMESHEWDEWRKAEETEMLGMVENCVYDQVARPKDKLVIGTKMLYKRKIGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATAAAKDGELRHFDA*QALLKADIDEEIYIEIPEEFQKFPGA--VGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKVDPCVFRKVVDGEAEIVVVVHVDDILAHVKDQATMNRFAAELGRKFKLKDMGDAEYYMGCHITRNRKARELKFDQHLYVESMVKRFNVKKEAK--IPAASGVQTLSKVDEPQNPEEKEEMKMFPYREAVGALMWAATMTRPDIACAVRAVARFCENPGLAHKKAVMKIFQYLLHTKEWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALSE 1266
QAMES + +W +A E+ M N V+D + P + +G K ++K K G +E++K RLVA+GF Q EG+ Y + +SP S+R+++A A D EL D A L ++DE+IY+E PE F K V +L K+IYGL QA R W KF + +T+ GF++ VD C++ KV G I ++++VDDIL D + L + F + DMG+A Y +G I R+R L Q Y++ +++RFN++ + P G LSK+ P+N E+E++K PY AVG+LM+A T TRPDI+ AV + R+ +PG H KA K+ +YL TK++ +TY + L + Y+DSD+G CLD+ +S SG V MLA GAISW S Q +TA+ T EAE+VA E
Sbjct: 240 QAMESDDSSKWMEAMNEELKSMAHNGVWDLIELPNNCKPVGCKWVFKTKRDAKGNIERFKARLVAKGFTQKEGIDYKDTFSPVSKKDSLRIIMALVAHFDLELHQMDVKTAFLNGNLDEDIYMEQPEGFAKKGNEHLVCKLKKSIYGLKQASRQWYIKFNNTITSFGFKENIVDQCIYLKV-SGSKFIFLILYVDDILLASSDLGLLRETKEYLSKNFHMVDMGEANYVIGIEIFRDRSRGVLGLSQKGYIDRVLERFNMQSCSSGIAPILKG-DKLSKMQCPRNNIEREQIKKIPYASAVGSLMYAQTCTRPDISFAVGMLGRYQSDPGFEHWKAAKKVMRYLQGTKDYMLTYK-RSEQLEVVGYSDSDYGGCLDSLKSTSGFVFMLANGAISWKSEKQSITASSTMEAEFVACFE 653
BLAST of mRNA_A-nodosum_M_contig118.26.1 vs. uniprot
Match: A0A5N6LW24_9ASTR (Integrase catalytic domain-containing protein n=2 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6LW24_9ASTR) HSP 1 Score: 283 bits (724), Expect = 7.370e-83 Identity = 169/428 (39.49%), Postives = 239/428 (55.84%), Query Frame = 1
Query: 7 SEPRNRRQAMESHEWDEWRKAEETEMLGMVENCVYDQVARPKDKLVIGTKMLYKRKIGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATAAAKDGELRHFDA*QALLKADIDEEIYIEIPEEF--QKFPGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKVDPCVFRKVVDGEAEIVVVVHVDDILAHVKDQATMNRFAAELGRKFKLKDMGDAEYYMGCHITRNRKARELKFDQHLYVESMVKRFNVK--KEAKIPAASGVQTLSKVDEPQNPEEKEEMKMFPYREAVGALMWAATMTRPDIACAVRAVARFCENPGLAHKKAVMKIFQYLLHTKEWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALSEVVKD 1278
+EP N + A+ E +W A +EM M +N V+D V P +G+K ++KRK G V YK RLVA+GF Q +GV Y E +SP SIR+LLA AA D E+ D A L + E++Y+ PE F K+P V +LNK+IYGL QA RCWN +F + GF + + +PCV+RK G ++++VDDIL + +N LG F +KD+G+A Y +G I R+R R L Q Y++ M+ RFN++ K+ IP G L+K P E M+ PY A+G++M+A TRPD++ A+ +RF ++PG+AH AV I +YL TKE + +GG L + YTD+ F D RS SG V L GA+SW S Q V A T+E+EY+A S+ K+
Sbjct: 464 NEPTNHKTAISDPESAKWLDAMNSEMQSMRDNQVWDLVELPPGSRAVGSKWIFKRKTDMHGNVHTYKARLVAKGFTQTQGVDYDETFSPVAMIKSIRILLAIAAYYDYEIWQMDVKTAFLNGHLSEDVYMVQPEGFVDPKYPNKVCKLNKSIYGLKQASRCWNLRFDQKIKEFGFIKNEDEPCVYRKA-SGRTISFLILYVDDILIIGNNIPMLNEVKHWLGNCFAMKDLGEAAYILGIKIHRDRSKRLLGMSQSAYIDKMMTRFNMENSKKGTIPMTKGT-VLNKSQSPSTDIEIRRMQAIPYASAIGSIMYAMLCTRPDVSYALSMTSRFQQSPGIAHWTAVKNILKYLRRTKEMFLIFGGVEEELTVRCYTDASFQTDRDDSRSQSGFVFTLNGGAVSWKSSKQSVVADSTTESEYIAASDAAKE 889
BLAST of mRNA_A-nodosum_M_contig118.26.1 vs. uniprot
Match: A0A6A3YGI7_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=11 Tax=Phytophthora TaxID=4783 RepID=A0A6A3YGI7_9STRA) HSP 1 Score: 281 bits (719), Expect = 1.570e-82 Identity = 168/433 (38.80%), Postives = 251/433 (57.97%), Query Frame = 1
Query: 13 PRNRRQAMESHEWDEWRKAEETEMLGMVENCVYDQVARPKDKLVIGTKMLYKRKIGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATAAAKDGELRHFDA*QALLKADIDEEIYIEIPEEFQKF---------PGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKVDPCVFRKVVDGEAEIVVVVHVDDILAHVKDQATMNRFAAELGRKFKLKDMGDAEYYMGCHITRNRKARELKFDQHLYVESMVKRFNVK--KEAKIPAASGVQTLSKVDEPQNPEEKEEMKMFPYREAVGALMWAATMTRPDIACAVRAVARFCENPGLAHKKAVMKIFQYLLHTKEWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALSEVVKD 1278
P+ +A + DEW+KA +E+ ++ N + V +P + IG + ++ K + G+V +YK RLVA+G+ Q G+ Y E YSP SIR +L +A+ E+ D A L ++ EIY+E+PEE ++ V L +++YGL QA R WN ++ ++GFE A DPCV+ + +GE E +V ++VDD+L + A + A + KF++KDMG A + +G I + + R L Q Y ES++K+F + K P GVQ L+K DEPQ E+K +MK+ PYR VG+LM+ A TRPDI+ AV ++RF ENPG H A +K+ +YLL TK+ GI Y G G +EAY+D+D+ D RRSVSG +LML + + W S Q+ A ++EAEY+ALS+ VK+
Sbjct: 397 PKTYAEATTRQDQDEWKKAIASELESLIVNKTWKLVPKPAHQRPIGCRWVFALKRDEKGQVVRYKARLVAKGYSQRHGIDYEETYSPVAYLNSIRAMLEKCSAEGMEIEQCDVDTAFLYEKLEAEIYMELPEELRELLELAEAEGEDDVVCMLLQSLYGLKQASRVWNETIDKNLKSMGFEPADADPCVYTRG-EGEDECIVCLYVDDMLIASRQMAVIASVKAGIAEKFRIKDMGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGVQ-LTKADEPQTEEDKAKMKLKPYRSLVGSLMYLARGTRPDISVAVAKLSRFPENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGAQLEAYSDADWAGNRDDRRSVSGMLLMLCRAPVVWRSTFQKTVALSSTEAEYLALSDCVKE 826 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig118.26.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig118.26.1 >prot_A-nodosum_M_contig118.26.1 ID=prot_A-nodosum_M_contig118.26.1|Name=mRNA_A-nodosum_M_contig118.26.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=258bp MTAIGFEQAKVDPCVFRKVVDGEAEIVVVVHVDDILAHVKDQATMNRFAAback to top mRNA from alignment at A-nodosum_M_contig118:480464..481744- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig118.26.1 ID=mRNA_A-nodosum_M_contig118.26.1|Name=mRNA_A-nodosum_M_contig118.26.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1281bp|location=Sequence derived from alignment at A-nodosum_M_contig118:480464..481744- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig118:480464..481744- >mRNA_A-nodosum_M_contig118.26.1 ID=mRNA_A-nodosum_M_contig118.26.1|Name=mRNA_A-nodosum_M_contig118.26.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=774bp|location=Sequence derived from alignment at A-nodosum_M_contig118:480464..481744- (Ascophyllum nodosum dioecious)back to top |