mRNA_A-nodosum_M_contig118.26.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig118.26.1
Unique NamemRNA_A-nodosum_M_contig118.26.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig118.26.1 vs. uniprot
Match: A0A2K3MAN7_TRIPR (Retrotransposon protein putative Ty1-copia subclass (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3MAN7_TRIPR)

HSP 1 Score: 288 bits (737), Expect = 5.310e-89
Identity = 172/423 (40.66%), Postives = 250/423 (59.10%), Query Frame = 1
Query:   10 EPRNRRQAMESHEWDEWRKAEETEMLGMVENCVYDQVARPKDKLVIGTKMLYKRKIGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATAAAKDGELRHFDA*QALLKADIDEEIYIEIPEEFQKFP--GAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKVDPCVFRKVVDGEAEIVVVVHVDDILAHVKDQATMNRFAAELGRKFKLKDMGDAEYYMGCHITRNRKARELKFDQHLYVESMVKRFNVKKEAK--IPAASGVQTLSKVDEPQNPEEKEEMKMFPYREAVGALMWAATMTRPDIACAVRAVARFCENPGLAHKKAVMKIFQYLLHTKEWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALSE 1266
            +P++  +AM+S + D+W +A E+EM  M  N V+  V   K    IG K +YK+KIG DGKVE YK RLVA+G+ Q EG+ Y E +SP     SIR+LLA AA  D E+   D   A L  ++ EE+Y+  PE F        V +L ++IYGL QA R WN +F + +    F + + +PCV++K+  G + I +V++VDDIL    D  +M      L  +F +KD+G+A Y +G  I R+R  R L   Q +Y+++++KR+N++K  +  +P   GV +LS+ + P+  EE+E M   PY  AVGA+M+  T TRPD+A A+   +R+  NPG  H K V  I +YL  TK+  + YG     L ++ YTD+ F +  D  +S+SG V  L  GAISW S  Q   A  T+EAEY+A SE
Sbjct:   92 DPKSYEEAMQSLDHDKWIRAMESEMESMKINKVWTLVEASKGIKPIGCKWVYKKKIGADGKVETYKARLVAKGYRQKEGIDYDETFSPVAMIKSIRILLAIAAYYDYEIWQMDVKTAFLNGELKEEVYMTQPEGFTSLSDHNKVCKLQRSIYGLKQASRSWNIRFNNTIEKFNFVKCEEEPCVYKKI-SGSSIIFLVLYVDDILLFGNDIPSMQSTKVWLSEQFSMKDLGEAAYILGIKIYRDRSKRLLGLSQSMYIDTILKRYNMEKSKRGYLPVGMGV-SLSRENCPKTLEERERMSRVPYASAVGAIMYTMTCTRPDVAYALGVTSRYQANPGEEHWKVVKTILKYLRRTKDQFLIYGNSE--LSLKGYTDASFASDKDDSKSISGYVFTLNGGAISWKSSKQATVADSTTEAEYIAASE 510          
BLAST of mRNA_A-nodosum_M_contig118.26.1 vs. uniprot
Match: A0A6A3Q908_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=8 Tax=Phytophthora TaxID=4783 RepID=A0A6A3Q908_9STRA)

HSP 1 Score: 282 bits (721), Expect = 1.160e-85
Identity = 168/433 (38.80%), Postives = 249/433 (57.51%), Query Frame = 1
Query:   13 PRNRRQAMESHEWDEWRKAEETEMLGMVENCVYDQVARPKDKLVIGTKMLYKRKIGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATAAAKDGELRHFDA*QALLKADIDEEIYIEIPEEFQKF---------PGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKVDPCVFRKVVDGEAEIVVVVHVDDILAHVKDQATMNRFAAELGRKFKLKDMGDAEYYMGCHITRNRKARELKFDQHLYVESMVKRFNVK--KEAKIPAASGVQTLSKVDEPQNPEEKEEMKMFPYREAVGALMWAATMTRPDIACAVRAVARFCENPGLAHKKAVMKIFQYLLHTKEWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALSEVVKD 1278
            P+   +A   H+ DEW+KA  +E+  ++ N  +  V +P  +  IG + ++  K  + G+V +YK RLVA+G+ Q  G+ Y E YSP     S+R +LA   A+  E+   D   A L  +++EEIY+E+PE  ++             V  L +++YGL QA R WN      + + GFE A  DPCV+ +  +GE E +V ++VDD+L   + +A +    A +  KF++KD+G A + +G  I  + + R L   Q  Y ES++K+F  +  K    P   GVQ L+K DEPQ  E+K +MK  PYR  VG+LM+ A  TRPDI+ AV  ++RF ENPG  H  A +K+ +YLL TK+ GI Y G   G   EAY+D+D+    D RRSVSG +LML    + W S  Q+  A  ++EAEY+ALS+ VK+
Sbjct:   66 PKTYAEATTRHDQDEWKKAIASELKSLIVNKTWKLVPKPAHQRPIGCRWVFALKRNEKGQVVRYKARLVAKGYSQRHGIDYEEAYSPVAYLNSVRAMLAKCGAEGMEIEQCDVDTAFLYGELEEEIYMELPEGLRELLDLAEAEGEDDVVCMLLQSLYGLKQASRVWNETIDKHLKSTGFEPADADPCVYTRG-EGEGECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDLGRARFIVGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGVQ-LTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQPEAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEAEYMALSDCVKE 495          
BLAST of mRNA_A-nodosum_M_contig118.26.1 vs. uniprot
Match: A0A2N9IUC8_FAGSY (Integrase catalytic domain-containing protein n=2 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9IUC8_FAGSY)

HSP 1 Score: 285 bits (728), Expect = 1.840e-84
Identity = 178/428 (41.59%), Postives = 250/428 (58.41%), Query Frame = 1
Query:    7 SEPRNRRQAMESHEWDEWRKAEETEMLGMVENCVYDQVARPKDKLVIGTKMLYKRKIGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATAAAKDGELRHFDA*QALLKADIDEEIYIEIPEEFQKF--PGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKVDPCVFRKVVDGEAEIVVVVHVDDILAHVKDQATMNRFAAELGRKFKLKDMGDAEYYMGCHITRNRKARELKFDQHLYVESMVKRFNVKKEAK--IPAASGVQTLSKVDEPQNPEEKEEMKMFPYREAVGALMWAATMTRPDIACAVRAVARFCENPGLAHKKAVMKIFQYLLHTKEWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALSEVVKD 1278
            ++P   ++AM   + + W+KA E+EM  M  N V+  V +P+    IG K +YKRK+G  GKVE YK RLVA+G+ Q  G+ Y E +SP     SIR+LL+ AA  D E+   D   A L  +I EEIY++ P  F        V +L K+IYGL QA R WN +F + + + GF Q   +PCV++KV  G     ++++VDDIL    D   M+     L   F +KD+G+A Y +G  + R+RK R L   Q  Y++ ++ RF+++   K   P   GV  LSK   P+  EE+E+M+  PY  AVG+LM+A   TRPDI  AV  V+R+  NPG  H  AV  I +YL  TK + + +G +   L ++ YTDSDF + +D R+S+SG V  L KGAISW S  Q+ TA  T EAEY+A SE  K+
Sbjct:  313 NDPVTYQEAMNDKDVEHWKKAMESEMDSMYTNQVWTLVDKPEGIKPIGCKWIYKRKLGPTGKVETYKVRLVAKGYTQKAGIDYEETFSPVAMLKSIRILLSIAAHYDYEIWQMDVKTAFLNGNIREEIYMDQPVGFISHGQESKVCKLMKSIYGLKQASRSWNIRFDEAIKSFGFSQNIDEPCVYKKV-SGRIITFLILYVDDILLIGNDVGAMSSIKMWLSSHFAMKDLGEASYILGIKLFRDRKKRLLGLSQVNYIDKILARFSMQDSKKGFSPFRHGVH-LSKNMCPKTQEEREKMRNCPYASAVGSLMYAMLCTRPDICYAVSIVSRYQSNPGPEHWTAVKHILKYLNRTKHYFLVFGSKD--LNIQGYTDSDFQSDIDDRKSISGFVFTLGKGAISWRSCKQDTTADSTIEAEYIAASEAAKE 736          
BLAST of mRNA_A-nodosum_M_contig118.26.1 vs. uniprot
Match: A0A438HUL4_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Vitis vinifera TaxID=29760 RepID=A0A438HUL4_VITVI)

HSP 1 Score: 277 bits (708), Expect = 1.940e-84
Identity = 168/417 (40.29%), Postives = 237/417 (56.83%), Query Frame = 1
Query:   28 QAMESHEWDEWRKAEETEMLGMVENCVYDQVARPKDKLVIGTKMLYKRKIGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATAAAKDGELRHFDA*QALLKADIDEEIYIEIPEEFQKFPGA--VGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKVDPCVFRKVVDGEAEIVVVVHVDDILAHVKDQATMNRFAAELGRKFKLKDMGDAEYYMGCHITRNRKARELKFDQHLYVESMVKRFNVKKEAK--IPAASGVQTLSKVDEPQNPEEKEEMKMFPYREAVGALMWAATMTRPDIACAVRAVARFCENPGLAHKKAVMKIFQYLLHTKEWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALSE 1266
            Q  +S   ++W KA + EM  M +N V+D V  PK    IG K ++K K    G + +YK RLVA+GF Q EG+ Y E +SP  S  S R+++A  A  D EL   D   A L  +IDE IY+  PE F+       V RL ++IYGL QA R W  KF   +T+ GF++  VD C++ K   G   I++V++VDDIL    D   ++     L  KF +KD+G+A + +G  I R+R    L   Q  Y++ ++ RF +   A    P A G    S    P+N  EK++M+ FPY  AVG+LM+A   TRPDIA  V  + R+  NPG+ H K   ++ +YL  TK++ +TY  +   L + AY+DSDF  CLD+RRS SG + MLA GA+SW S  Q + A+ T EAE++A  E
Sbjct:   12 QVKQSSNSEKWIKAMKDEMKSMKDNGVWDLVELPKGVKPIGCKWIFKTKRDSKGNIVRYKARLVAKGFTQKEGIDYKETFSPVSSKDSFRIIMALVAHYDLELHQMDVKTAFLNGNIDETIYMVQPENFESNDSKQLVCRLKRSIYGLKQASRQWYRKFDQVITSFGFKENTVDQCIYLKF-SGSKFIILVLYVDDILLASSDVGLLHETMRFLSSKFDMKDLGNASFVLGIQIHRDRSRGILGLSQKAYIDKVLSRFGMSNYAPGDTPVAKG-DKFSLHQCPKNELEKKDMERFPYASAVGSLMYAQVCTRPDIAYIVGMLGRYLSNPGMDHWKKAKRVMRYLQRTKDYMLTYR-RSSHLEIVAYSDSDFAGCLDSRRSTSGCIFMLAGGAVSWKSVKQTLVASSTMEAEFIACYE 425          
BLAST of mRNA_A-nodosum_M_contig118.26.1 vs. uniprot
Match: UPI001131160E (DDE-type integrase/transposase/recombinase n=2 Tax=Escherichia coli TaxID=562 RepID=UPI001131160E)

HSP 1 Score: 285 bits (728), Expect = 2.750e-84
Identity = 170/410 (41.46%), Postives = 244/410 (59.51%), Query Frame = 1
Query:   58 WRKAEETEMLGMVENCVYDQVARPKDKLVIGTKMLYKRKIGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATAAAKDGELRHFDA*QALLKADIDEEIYIEIPEEFQKFPGA-VGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKVDPCVFRKVVDGEAEIVVVVHVDDILAHVKDQATMNRFAAELGRKFKLKDMGDAEYYMGCHITRNRKARELKFDQHLYVESMVKRFNV--KKEAKIPAASGVQTLSKVDEPQNPEEKEEMKMFPYREAVGALMWAATMTRPDIACAVRAVARFCENPGLAHKKAVMKIFQYLLHTKEWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALSEVVKD 1278
            W  A ++E+  M +N V+D V  P+  + IG K ++K+KIG DGKVE YK RLVA+GF Q +G+ Y E +SP     SIR+LLA AA  D E+   D     L   I+E I++E P+ F+   G+ V +L ++IYGL QA R WN +F + + + GF + + +PCV++KV D  A   +V++VDDIL    D   +      L   F +KD+G+A Y +G  I R+R  R +   Q LY+E ++KRFN+   K   +P   G+  LSK   P+ PEE+++M   PY  A+G+LM+A   TRP+IA AV   +R+  NPGL H  A+  I +YL  TK+  + YGG    L ++ YTDSDF + +D R+S S  V +   GA+SW S  Q  TA  T EAEY+A S+  K+
Sbjct:  414 WIDAMKSEIDSMYKNQVWDLVDPPEGIVPIGNKWVFKKKIGSDGKVETYKARLVAKGFRQRQGIDYEETFSPVAMLKSIRILLAIAAYYDYEIWQMDVKTTFLNGYIEENIFMEQPKGFESQDGSKVCKLKRSIYGLKQASRSWNIRFDEAIKSFGFIKNEDEPCVYKKVSDS-AITFLVLYVDDILLMGNDTGMLTTIKVWLSNTFSMKDLGEATYILGIRIYRDRAKRIIGLSQSLYLEKVLKRFNMLDSKRGLLPVRHGIH-LSKEMSPKTPEERDKMARIPYASAIGSLMYAMLCTRPNIAYAVSLTSRYQSNPGLEHWIAIKNILKYLRRTKDLFLIYGGGD--LQLDGYTDSDFQSDIDDRKSTSRYVFICNGGAVSWKSFKQSTTADSTIEAEYIAASDAAKE 819          
BLAST of mRNA_A-nodosum_M_contig118.26.1 vs. uniprot
Match: A0A438JMN5_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=5 Tax=Vitis vinifera TaxID=29760 RepID=A0A438JMN5_VITVI)

HSP 1 Score: 275 bits (703), Expect = 6.880e-84
Identity = 165/415 (39.76%), Postives = 242/415 (58.31%), Query Frame = 1
Query:   34 MESHEWDEWRKAEETEMLGMVENCVYDQVARPKDKLVIGTKMLYKRKIGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATAAAKDGELRHFDA*QALLKADIDEEIYIEIPEEFQKFPGA--VGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKVDPCVFRKVVDGEAEIVVVVHVDDILAHVKDQATMNRFAAELGRKFKLKDMGDAEYYMGCHITRNRKARELKFDQHLYVESMVKRFNVKKEAK--IPAASGVQTLSKVDEPQNPEEKEEMKMFPYREAVGALMWAATMTRPDIACAVRAVARFCENPGLAHKKAVMKIFQYLLHTKEWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALSE 1266
            MES +  +W +A   E+  M  N V+D +  P +   +G K ++K K    G +E++K RLVA+GF Q EG+ Y + +SP     S+R+++A  A  D EL   D   A L  ++DE+IY+E PE F K      V +L K+IYGL QA R W  KF + +T+ GF++  +D C++ KV  G   I ++++VDDIL    D   +      L + F + DMG+A Y +   I R+R    L   Q  Y++ +++RFN++  +    P   G   LSK+  P+N  E+E+MK  PY  AVG+LM+A T TRPDI+ AV  + R+  +PG  H KA  K+ +YL  TK++ +TY  +   L +  Y+DSD+G CLD+ +S SG V MLA GAISW S  Q +TA+ T EAE+VA  E
Sbjct:    1 MESDDSSKWMEAMNEELKSMAHNGVWDLIELPNNCKPVGCKWVFKTKRDAKGNIERFKARLVAKGFTQKEGIDYKDTFSPVSKKDSLRIIMALVAHFDLELHQMDVKTAFLNGNLDEDIYMEQPEGFAKKGNEHLVCKLKKSIYGLKQASRQWYIKFNNTITSFGFKENILDQCIYLKV-SGSKFIFLILYVDDILLASSDLGLLRETKEYLSKNFHMVDMGEANYVISIEIFRDRSRGVLGLSQKGYIDRVLERFNMQSCSSGIAPILKG-DKLSKMQCPRNNIEREQMKKIPYASAVGSLMYAQTCTRPDISFAVGMLGRYQSDPGFEHWKAAKKVMRYLQGTKDYMLTYK-RSEQLEVVGYSDSDYGGCLDSLKSTSGFVFMLANGAISWKSEKQSITASSTMEAEFVACFE 412          
BLAST of mRNA_A-nodosum_M_contig118.26.1 vs. uniprot
Match: A0A2K3LA50_TRIPR (Putative retrotransposon Ty1-copia subclass protein (Fragment) n=2 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3LA50_TRIPR)

HSP 1 Score: 283 bits (724), Expect = 1.170e-83
Identity = 174/425 (40.94%), Postives = 242/425 (56.94%), Query Frame = 1
Query:    7 SEPRNRRQAMESHEWDEWRKAEETEMLGMVENCVYDQVARPKDKLVIGTKMLYKRKIGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATAAAKDGELRHFDA*QALLKADIDEEIYIEIPEEFQKFPGA--VGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKVDPCVFRKVVDGEAEIVVVVHVDDILAHVKDQATMNRFAAELGRKFKLKDMGDAEYYMGCHITRNRKARELKFDQHLYVESMVKRFNVKK--EAKIPAASGVQ-TLSKVDEPQNPEEKEEMKMFPYREAVGALMWAATMTRPDIACAVRAVARFCENPGLAHKKAVMKIFQYLLHTKEWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALSE 1266
            ++P    QAM   E + W  A + EM  MV N V+D V  P     IG K ++K K    G +E+YK RLVA+GF Q EG+ YTE +SP     S R+++A  A  + EL   D   A L   ++EE+Y++ PE F    G   V +LN++IYGL QA R W  KF + +T+ GFE+  +D C+++KV  G     +V++VDDIL    D+  +      L R F +KDMG+A Y +G  I R+R    L   Q  Y+  +++RFN+K    +  P   G +  LS+   PQN  E+E MK  PY  AVG+LM+A   TRPDIA AV  + R+  NPG+ H KA  K+ +YL  TK + + Y      L +  Y+DSD+  C+DTR+S SG V MLA GA+SW S  Q +TA  T EAE+V+  E
Sbjct:  431 NDPETFSQAMSCKESNLWHDAMKEEMNSMVSNKVWDLVTLPNGVKAIGCKWVFKTKRDSQGNIERYKARLVAKGFTQREGIDYTETFSPVSKKDSFRVIMALVAHFNFELHQMDVKTAFLNGSLEEEVYMKQPEGFYSSEGENLVCKLNRSIYGLKQASRQWYLKFHEVITSFGFEENVMDQCIYQKV-SGSHICFLVLYVDDILLATNDKGMLYEVKQFLSRNFDMKDMGEASYVIGIKIHRDRNRGILGLSQEAYINKVLERFNMKNCSPSVAPIVKGDRFELSQC--PQNDFEREHMKNIPYASAVGSLMYAQVCTRPDIAYAVGVLGRYQSNPGVDHWKAAKKVMRYLQGTKNFMLMYKRTD-NLEVIGYSDSDYAGCIDTRKSTSGYVFMLASGAVSWRSAKQTLTATSTMEAEFVSCFE 851          
BLAST of mRNA_A-nodosum_M_contig118.26.1 vs. uniprot
Match: A0A438IPK0_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Vitis vinifera TaxID=29760 RepID=A0A438IPK0_VITVI)

HSP 1 Score: 280 bits (716), Expect = 2.220e-83
Identity = 168/417 (40.29%), Postives = 245/417 (58.75%), Query Frame = 1
Query:   28 QAMESHEWDEWRKAEETEMLGMVENCVYDQVARPKDKLVIGTKMLYKRKIGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATAAAKDGELRHFDA*QALLKADIDEEIYIEIPEEFQKFPGA--VGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKVDPCVFRKVVDGEAEIVVVVHVDDILAHVKDQATMNRFAAELGRKFKLKDMGDAEYYMGCHITRNRKARELKFDQHLYVESMVKRFNVKKEAK--IPAASGVQTLSKVDEPQNPEEKEEMKMFPYREAVGALMWAATMTRPDIACAVRAVARFCENPGLAHKKAVMKIFQYLLHTKEWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALSE 1266
            QAMES +  +W +A   E+  M  N V+D +  P +   +G K ++K K    G +E++K RLVA+GF Q EG+ Y + +SP     S+R+++A  A  D EL   D   A L  ++DE+IY+E PE F K      V +L K+IYGL QA R W  KF + +T+ GF++  VD C++ KV  G   I ++++VDDIL    D   +      L + F + DMG+A Y +G  I R+R    L   Q  Y++ +++RFN++  +    P   G   LSK+  P+N  E+E++K  PY  AVG+LM+A T TRPDI+ AV  + R+  +PG  H KA  K+ +YL  TK++ +TY  +   L +  Y+DSD+G CLD+ +S SG V MLA GAISW S  Q +TA+ T EAE+VA  E
Sbjct:  240 QAMESDDSSKWMEAMNEELKSMAHNGVWDLIELPNNCKPVGCKWVFKTKRDAKGNIERFKARLVAKGFTQKEGIDYKDTFSPVSKKDSLRIIMALVAHFDLELHQMDVKTAFLNGNLDEDIYMEQPEGFAKKGNEHLVCKLKKSIYGLKQASRQWYIKFNNTITSFGFKENIVDQCIYLKV-SGSKFIFLILYVDDILLASSDLGLLRETKEYLSKNFHMVDMGEANYVIGIEIFRDRSRGVLGLSQKGYIDRVLERFNMQSCSSGIAPILKG-DKLSKMQCPRNNIEREQIKKIPYASAVGSLMYAQTCTRPDISFAVGMLGRYQSDPGFEHWKAAKKVMRYLQGTKDYMLTYK-RSEQLEVVGYSDSDYGGCLDSLKSTSGFVFMLANGAISWKSEKQSITASSTMEAEFVACFE 653          
BLAST of mRNA_A-nodosum_M_contig118.26.1 vs. uniprot
Match: A0A5N6LW24_9ASTR (Integrase catalytic domain-containing protein n=2 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6LW24_9ASTR)

HSP 1 Score: 283 bits (724), Expect = 7.370e-83
Identity = 169/428 (39.49%), Postives = 239/428 (55.84%), Query Frame = 1
Query:    7 SEPRNRRQAMESHEWDEWRKAEETEMLGMVENCVYDQVARPKDKLVIGTKMLYKRKIGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATAAAKDGELRHFDA*QALLKADIDEEIYIEIPEEF--QKFPGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKVDPCVFRKVVDGEAEIVVVVHVDDILAHVKDQATMNRFAAELGRKFKLKDMGDAEYYMGCHITRNRKARELKFDQHLYVESMVKRFNVK--KEAKIPAASGVQTLSKVDEPQNPEEKEEMKMFPYREAVGALMWAATMTRPDIACAVRAVARFCENPGLAHKKAVMKIFQYLLHTKEWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALSEVVKD 1278
            +EP N + A+   E  +W  A  +EM  M +N V+D V  P     +G+K ++KRK    G V  YK RLVA+GF Q +GV Y E +SP     SIR+LLA AA  D E+   D   A L   + E++Y+  PE F   K+P  V +LNK+IYGL QA RCWN +F   +   GF + + +PCV+RK   G     ++++VDDIL    +   +N     LG  F +KD+G+A Y +G  I R+R  R L   Q  Y++ M+ RFN++  K+  IP   G   L+K   P    E   M+  PY  A+G++M+A   TRPD++ A+   +RF ++PG+AH  AV  I +YL  TKE  + +GG    L +  YTD+ F    D  RS SG V  L  GA+SW S  Q V A  T+E+EY+A S+  K+
Sbjct:  464 NEPTNHKTAISDPESAKWLDAMNSEMQSMRDNQVWDLVELPPGSRAVGSKWIFKRKTDMHGNVHTYKARLVAKGFTQTQGVDYDETFSPVAMIKSIRILLAIAAYYDYEIWQMDVKTAFLNGHLSEDVYMVQPEGFVDPKYPNKVCKLNKSIYGLKQASRCWNLRFDQKIKEFGFIKNEDEPCVYRKA-SGRTISFLILYVDDILIIGNNIPMLNEVKHWLGNCFAMKDLGEAAYILGIKIHRDRSKRLLGMSQSAYIDKMMTRFNMENSKKGTIPMTKGT-VLNKSQSPSTDIEIRRMQAIPYASAIGSIMYAMLCTRPDVSYALSMTSRFQQSPGIAHWTAVKNILKYLRRTKEMFLIFGGVEEELTVRCYTDASFQTDRDDSRSQSGFVFTLNGGAVSWKSSKQSVVADSTTESEYIAASDAAKE 889          
BLAST of mRNA_A-nodosum_M_contig118.26.1 vs. uniprot
Match: A0A6A3YGI7_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=11 Tax=Phytophthora TaxID=4783 RepID=A0A6A3YGI7_9STRA)

HSP 1 Score: 281 bits (719), Expect = 1.570e-82
Identity = 168/433 (38.80%), Postives = 251/433 (57.97%), Query Frame = 1
Query:   13 PRNRRQAMESHEWDEWRKAEETEMLGMVENCVYDQVARPKDKLVIGTKMLYKRKIGQDGKVEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAASIRMLLATAAAKDGELRHFDA*QALLKADIDEEIYIEIPEEFQKF---------PGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGFEQAKVDPCVFRKVVDGEAEIVVVVHVDDILAHVKDQATMNRFAAELGRKFKLKDMGDAEYYMGCHITRNRKARELKFDQHLYVESMVKRFNVK--KEAKIPAASGVQTLSKVDEPQNPEEKEEMKMFPYREAVGALMWAATMTRPDIACAVRAVARFCENPGLAHKKAVMKIFQYLLHTKEWGITYGGQGCGLCMEAYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVALSEVVKD 1278
            P+   +A    + DEW+KA  +E+  ++ N  +  V +P  +  IG + ++  K  + G+V +YK RLVA+G+ Q  G+ Y E YSP     SIR +L   +A+  E+   D   A L   ++ EIY+E+PEE ++             V  L +++YGL QA R WN     ++ ++GFE A  DPCV+ +  +GE E +V ++VDD+L   +  A +    A +  KF++KDMG A + +G  I  + + R L   Q  Y ES++K+F  +  K    P   GVQ L+K DEPQ  E+K +MK+ PYR  VG+LM+ A  TRPDI+ AV  ++RF ENPG  H  A +K+ +YLL TK+ GI Y G   G  +EAY+D+D+    D RRSVSG +LML +  + W S  Q+  A  ++EAEY+ALS+ VK+
Sbjct:  397 PKTYAEATTRQDQDEWKKAIASELESLIVNKTWKLVPKPAHQRPIGCRWVFALKRDEKGQVVRYKARLVAKGYSQRHGIDYEETYSPVAYLNSIRAMLEKCSAEGMEIEQCDVDTAFLYEKLEAEIYMELPEELRELLELAEAEGEDDVVCMLLQSLYGLKQASRVWNETIDKNLKSMGFEPADADPCVYTRG-EGEDECIVCLYVDDMLIASRQMAVIASVKAGIAEKFRIKDMGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGVQ-LTKADEPQTEEDKAKMKLKPYRSLVGSLMYLARGTRPDISVAVAKLSRFPENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGAQLEAYSDADWAGNRDDRRSVSGMLLMLCRAPVVWRSTFQKTVALSSTEAEYLALSDCVKE 826          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig118.26.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2K3MAN7_TRIPR5.310e-8940.66Retrotransposon protein putative Ty1-copia subclas... [more]
A0A6A3Q908_9STRA1.160e-8538.80Retrovirus-related Pol polyprotein from transposon... [more]
A0A2N9IUC8_FAGSY1.840e-8441.59Integrase catalytic domain-containing protein n=2 ... [more]
A0A438HUL4_VITVI1.940e-8440.29Retrovirus-related Pol polyprotein from transposon... [more]
UPI001131160E2.750e-8441.46DDE-type integrase/transposase/recombinase n=2 Tax... [more]
A0A438JMN5_VITVI6.880e-8439.76Retrovirus-related Pol polyprotein from transposon... [more]
A0A2K3LA50_TRIPR1.170e-8340.94Putative retrotransposon Ty1-copia subclass protei... [more]
A0A438IPK0_VITVI2.220e-8340.29Retrovirus-related Pol polyprotein from transposon... [more]
A0A5N6LW24_9ASTR7.370e-8339.49Integrase catalytic domain-containing protein n=2 ... [more]
A0A6A3YGI7_9STRA1.570e-8238.80Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig118contigA-nodosum_M_contig118:480464..481744 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog67593.Physo140614
PFAMsRVT_2,Retrotran_gag_2,rve
Model size1281
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.06e-44
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3QHHC@4776|Peronosporales
Descriptiongag-polypeptide of LTR copia-type
Cds size774
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866596.426788-CDS-A-nodosum_M_contig118:480463..4812371680866596.426788-CDS-A-nodosum_M_contig118:480463..481237Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig118 480464..481237 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866596.4388092-UTR-A-nodosum_M_contig118:481237..4817441680866596.4388092-UTR-A-nodosum_M_contig118:481237..481744Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig118 481238..481744 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig118.26.1prot_A-nodosum_M_contig118.26.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig118 480464..481237 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig118.26.1

>prot_A-nodosum_M_contig118.26.1 ID=prot_A-nodosum_M_contig118.26.1|Name=mRNA_A-nodosum_M_contig118.26.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=258bp
MTAIGFEQAKVDPCVFRKVVDGEAEIVVVVHVDDILAHVKDQATMNRFAA
ELGRKFKLKDMGDAEYYMGCHITRNRKARELKFDQHLYVESMVKRFNVKK
EAKIPAASGVQTLSKVDEPQNPEEKEEMKMFPYREAVGALMWAATMTRPD
IACAVRAVARFCENPGLAHKKAVMKIFQYLLHTKEWGITYGGQGCGLCME
AYTDSDFGACLDTRRSVSGAVLMLAKGAISWHSRMQEVTAAGTSEAEYVA
LSEVVKDV
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mRNA from alignment at A-nodosum_M_contig118:480464..481744-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig118.26.1 ID=mRNA_A-nodosum_M_contig118.26.1|Name=mRNA_A-nodosum_M_contig118.26.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1281bp|location=Sequence derived from alignment at A-nodosum_M_contig118:480464..481744- (Ascophyllum nodosum dioecious)
GATGTATCAGAACCAAGGAATCGGCGACAGGCGATGGAATCGCATGAATG GGACGAATGGCGGAAGGCAGAAGAGACTGAGATGCTTGGAATGGTCGAGA ACTGCGTTTATGATCAGGTGGCTCGGCCGAAGGATAAGCTCGTGATTGGC ACGAAAATGTTGTACAAGCGAAAAATCGGGCAGGACGGCAAGGTCGAGAA GTACAAGTGTCGACTTGTCGCTCAGGGGTTCTGGCAGGTGGAAGGTGTGC ACTACACGGAAAAGTACTCGCCCACGCCATCAGCCGCGTCAATCCGGATG CTTTTGGCGACGGCCGCAGCCAAGGATGGGGAGCTGCGCCATTTCGACGC ATAGCAGGCGTTGTTGAAGGCGGATATTGACGAGGAGATATACATAGAGA TCCCCGAAGAGTTCCAGAAGTTTCCGGGGGCAGTGGGACGGCTTAATAAG GCCATTTACGGACTCGTGCAGGCGGGGAGGTGCTGGAATAATAAGTTCTG TGATGACATGACGGCGATTGGATTCGAGCAGGCAAAGGTGGACCCGTGCG TGTTCCGCAAGGTCGTTGACGGTGAGGCGGAGATCGTGGTGGTCGTGCAC GTAGACGACATCCTTGCCCACGTCAAAGACCAAGCGACGATGAACAGATT TGCGGCCGAGCTTGGGCGGAAGTTTAAGTTGAAGGACATGGGGGACGCCG AGTACTACATGGGTTGTCACATTACCAGGAACCGCAAGGCGCGTGAATTA AAGTTCGACCAACACCTATATGTGGAGTCAATGGTAAAGAGATTCAATGT CAAGAAGGAAGCCAAAATACCGGCTGCGTCGGGGGTGCAGACGCTCTCAA AGGTGGATGAGCCGCAAAATCCAGAGGAGAAAGAAGAGATGAAGATGTTC CCATACCGAGAGGCAGTGGGGGCACTGATGTGGGCGGCGACGATGACACG GCCGGATATCGCGTGCGCCGTACGTGCTGTAGCCAGGTTCTGCGAAAACC CTGGGCTGGCACACAAGAAGGCAGTGATGAAGATCTTCCAGTATCTTCTG CACACGAAAGAATGGGGGATTACGTACGGTGGACAGGGCTGTGGACTCTG CATGGAGGCATACACGGATTCGGATTTCGGAGCCTGCCTGGACACAAGAC GATCGGTTTCAGGTGCGGTGTTGATGTTGGCCAAGGGAGCGATCAGTTGG CACTCGAGGATGCAAGAAGTAACAGCAGCAGGTACCTCGGAGGCAGAGTA CGTTGCCTTATCGGAGGTAGTCAAGGATGTA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig118:480464..481744-

>mRNA_A-nodosum_M_contig118.26.1 ID=mRNA_A-nodosum_M_contig118.26.1|Name=mRNA_A-nodosum_M_contig118.26.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=774bp|location=Sequence derived from alignment at A-nodosum_M_contig118:480464..481744- (Ascophyllum nodosum dioecious)
ATGACGGCGATTGGATTCGAGCAGGCAAAGGTGGACCCGTGCGTGTTCCG
CAAGGTCGTTGACGGTGAGGCGGAGATCGTGGTGGTCGTGCACGTAGACG
ACATCCTTGCCCACGTCAAAGACCAAGCGACGATGAACAGATTTGCGGCC
GAGCTTGGGCGGAAGTTTAAGTTGAAGGACATGGGGGACGCCGAGTACTA
CATGGGTTGTCACATTACCAGGAACCGCAAGGCGCGTGAATTAAAGTTCG
ACCAACACCTATATGTGGAGTCAATGGTAAAGAGATTCAATGTCAAGAAG
GAAGCCAAAATACCGGCTGCGTCGGGGGTGCAGACGCTCTCAAAGGTGGA
TGAGCCGCAAAATCCAGAGGAGAAAGAAGAGATGAAGATGTTCCCATACC
GAGAGGCAGTGGGGGCACTGATGTGGGCGGCGACGATGACACGGCCGGAT
ATCGCGTGCGCCGTACGTGCTGTAGCCAGGTTCTGCGAAAACCCTGGGCT
GGCACACAAGAAGGCAGTGATGAAGATCTTCCAGTATCTTCTGCACACGA
AAGAATGGGGGATTACGTACGGTGGACAGGGCTGTGGACTCTGCATGGAG
GCATACACGGATTCGGATTTCGGAGCCTGCCTGGACACAAGACGATCGGT
TTCAGGTGCGGTGTTGATGTTGGCCAAGGGAGCGATCAGTTGGCACTCGA
GGATGCAAGAAGTAACAGCAGCAGGTACCTCGGAGGCAGAGTACGTTGCC
TTATCGGAGGTAGTCAAGGATGTA
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