mRNA_A-nodosum_M_contig1179.12.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1179.12.1
Unique NamemRNA_A-nodosum_M_contig1179.12.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig1179.12.1 vs. uniprot
Match: A0A6H5KXZ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXZ7_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 1.000e-15
Identity = 47/112 (41.96%), Postives = 68/112 (60.71%), Query Frame = 1 
Query:    4 LQGKKLGSAQYIRDENGKLLWKLDEICARWRRYFTSLLSTTSAALN--------RTPTALSLGDPPVVSETKQALRSMANGKVMGPDELPAELLKLGLSDSSHEILLAFHDI 315
            ++GK+  ++Q I+DE+GK+L     I  RW R+F  LL+T S  ++        R PT + L D P + E ++A+R MAN K +GPD+LPAEL+KL L D    +L  FH I
Sbjct:   48 VEGKRSFTSQNIKDEDGKVLRDPTFIRQRWARWFHKLLNTKSPTIDLHAADKVKRWPTCVPLDDIPSLLEVEEAVREMANRKAVGPDDLPAELIKLFL-DGDQGLLREFHAI 158
[Close]
BLAST of mRNA_A-nodosum_M_contig1179.12.1 vs. uniprot
Match: A0A6H5K0P7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0P7_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 1.860e-15
Identity = 46/110 (41.82%), Postives = 67/110 (60.91%), Query Frame = 1 
Query:    4 LQGKKLGSAQYIRDENGKLLWKLDEICARWRRYFTSLLSTTSAALN--------RTPTALSLGDPPVVSETKQALRSMANGKVMGPDELPAELLKLGLSDSSHEILLAFH 309
            ++GK+  ++Q I+DE+GK+L     I  RW R+F  LL+T S  ++        R PT + L D P + E ++A+R MAN K +GPD+LPAEL+KL L D    +L  FH
Sbjct:   49 VEGKRSFTSQNIKDEDGKVLRDPTFIRQRWARWFHKLLNTKSPTIDLHAADKVKRWPTCVPLDDIPSLLEVEEAVREMANRKAVGPDDLPAELIKLFL-DGDQGLLREFH 157
[Close]
BLAST of mRNA_A-nodosum_M_contig1179.12.1 vs. uniprot
Match: A0A6H5L012_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L012_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 2.620e-15
Identity = 47/112 (41.96%), Postives = 68/112 (60.71%), Query Frame = 1 
Query:    4 LQGKKLGSAQYIRDENGKLLWKLDEICARWRRYFTSLLSTTSAALN--------RTPTALSLGDPPVVSETKQALRSMANGKVMGPDELPAELLKLGLSDSSHEILLAFHDI 315
            ++GK+  ++Q I+DE+GK+L     I  RW R+F  LL+T S  ++        R PT + L D P + E ++A+R MAN K +GPD+LPAEL+KL L D    +L  FH I
Sbjct:   71 VEGKRSFTSQNIKDEDGKVLRDPTFIRQRWARWFHKLLNTKSPTIDLHAADKVKRWPTCVPLDDIPSLREVEEAVREMANRKAVGPDDLPAELIKLFL-DGDQGLLREFHAI 181
[Close]
BLAST of mRNA_A-nodosum_M_contig1179.12.1 vs. uniprot
Match: A0A6H5JHD4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHD4_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 2.810e-15
Identity = 46/110 (41.82%), Postives = 67/110 (60.91%), Query Frame = 1 
Query:    4 LQGKKLGSAQYIRDENGKLLWKLDEICARWRRYFTSLLSTTSAALN--------RTPTALSLGDPPVVSETKQALRSMANGKVMGPDELPAELLKLGLSDSSHEILLAFH 309
            ++GK+  ++Q I+DE+GK+L     I  RW R+F  LL+T S  ++        R PT + L D P + E ++A+R MAN K +GPD+LPAEL+KL L D    +L  FH
Sbjct:    4 VEGKRSFTSQNIKDEDGKVLRDPTFIRQRWARWFHKLLNTESPTIDLHAADKVKRWPTCVPLDDIPSLLEVEEAVREMANRKAVGPDDLPAELIKLFL-DGDQGLLREFH 112
[Close]
BLAST of mRNA_A-nodosum_M_contig1179.12.1 vs. uniprot
Match: A0A6H5KAA3_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAA3_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 6.220e-15
Identity = 47/112 (41.96%), Postives = 68/112 (60.71%), Query Frame = 1 
Query:    4 LQGKKLGSAQYIRDENGKLLWKLDEICARWRRYFTSLLSTTSAALN--------RTPTALSLGDPPVVSETKQALRSMANGKVMGPDELPAELLKLGLSDSSHEILLAFHDI 315
            ++GK+  ++Q I+ E+GK+LW    I  RW R+F  LL+T S  ++        R PT + L D P + E ++A+R MAN K +GPD+LPAEL+KL L D    +L  FH I
Sbjct:  255 VKGKRSFTSQNIKYEDGKVLWDPTFIRQRWARWFHKLLNTKSPTIDLHAADKVKRWPTCVPLDDIPSLLEVEEAVRGMANRKAVGPDDLPAELIKLFL-DGDQGLLREFHAI 365
[Close]
BLAST of mRNA_A-nodosum_M_contig1179.12.1 vs. uniprot
Match: A0A6H5LBY4_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBY4_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 6.620e-15
Identity = 48/112 (42.86%), Postives = 68/112 (60.71%), Query Frame = 1 
Query:    4 LQGKKLGSAQYIRDENGKLLWKLDEICARWRRYFTSLLSTTSAALN--------RTPTALSLGDPPVVSETKQALRSMANGKVMGPDELPAELLKLGLSDSSHEILLAFHDI 315
            ++GKK  ++Q I+DE+GK+L     I  RW R+F  LL+T S  ++        R PT + L D P + E ++A+R MAN K +GPD+LPAEL+KL L D    +L  FH I
Sbjct:   24 VEGKKSVTSQNIKDEDGKVLRDPTFIRQRWARWFHKLLNTKSPTIDLHAADKVKRWPTCVPLDDIPSLLEVEEAVREMANRKAVGPDDLPAELIKLFL-DGDQGLLREFHAI 134
[Close]
BLAST of mRNA_A-nodosum_M_contig1179.12.1 vs. uniprot
Match: A0A6H5L6U9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6U9_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 6.660e-15
Identity = 47/112 (41.96%), Postives = 67/112 (59.82%), Query Frame = 1 
Query:    4 LQGKKLGSAQYIRDENGKLLWKLDEICARWRRYFTSLLSTTSAALN--------RTPTALSLGDPPVVSETKQALRSMANGKVMGPDELPAELLKLGLSDSSHEILLAFHDI 315
            ++GK+  ++Q I+DE+GK+L     I  RW R+F  LL+T S  ++        R PT + L D P + E ++A+R MAN K +GPD+LPAEL+KL L D     L  FH I
Sbjct:  107 VEGKRSFTSQNIKDEDGKVLGDPTIIRQRWARWFPKLLNTKSPTIDLHAADKVKRWPTCVPLDDIPSLLEVEEAVREMANRKAVGPDDLPAELIKLFL-DGDQGFLREFHAI 217
[Close]
BLAST of mRNA_A-nodosum_M_contig1179.12.1 vs. uniprot
Match: A0A6H5JQE0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQE0_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 6.970e-15
Identity = 46/112 (41.07%), Postives = 67/112 (59.82%), Query Frame = 1 
Query:    4 LQGKKLGSAQYIRDENGKLLWKLDEICARWRRYFTSLLSTTSAALN--------RTPTALSLGDPPVVSETKQALRSMANGKVMGPDELPAELLKLGLSDSSHEILLAFHDI 315
            ++ K+  ++Q I+DE+GK+L     I  RW R+F  LL+T S  ++        R PT + L D P + E ++A+R MAN K +GPD+LPAEL+KL L D    +L  FH I
Sbjct:    6 VESKRSFTSQNIKDEDGKVLQDPAFIRQRWARWFHKLLNTKSPTIDLHAADKVKRWPTCVPLDDIPSLLEVEEAVREMANRKAVGPDDLPAELIKLFL-DGDQGLLREFHSI 116
[Close]
BLAST of mRNA_A-nodosum_M_contig1179.12.1 vs. uniprot
Match: A0A6H5JR68_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR68_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 7.490e-15
Identity = 47/110 (42.73%), Postives = 67/110 (60.91%), Query Frame = 1 
Query:    4 LQGKKLGSAQYIRDENGKLLWKLDEICARWRRYFTSLLSTTSAALN--------RTPTALSLGDPPVVSETKQALRSMANGKVMGPDELPAELLKLGLSDSSHEILLAFH 309
            +QGK+  ++Q I+DE+GK+L     I  RW R+F  LL+T S  ++        R PT + L D P + E ++A+R MAN K +GPD+LPAEL+KL L D    +L  FH
Sbjct:    4 VQGKRSFTSQNIKDEDGKVLRDPTFIRQRWARWFHKLLNTKSPTIDLHAADKVKRWPTCVPLDDIPSLLEVEEAVREMANRKAVGPDDLPAELIKLFL-DGDQGLLREFH 112
[Close]
BLAST of mRNA_A-nodosum_M_contig1179.12.1 vs. uniprot
Match: A0A6H5JLR4_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLR4_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 1.470e-14
Identity = 44/105 (41.90%), Postives = 62/105 (59.05%), Query Frame = 1 
Query:   25 SAQYIRDENGKLLWKLDEICARWRRYFTSLLSTTSAALN--------RTPTALSLGDPPVVSETKQALRSMANGKVMGPDELPAELLKLGLSDSSHEILLAFHDI 315
            ++Q I+DE+GK+L     I  RW R+F  LL+T S  ++        R PT + L D P + E ++A+R MAN K +GPD+LPAEL+KL   D    +L  FH I
Sbjct:   12 TSQNIKDEDGKVLRDPTFIRQRWARWFHKLLNTKSPTIDLHAADKVKRGPTCVPLDDIPSLLEVEEAVREMANRKAVGPDDLPAELIKLFFLDGDQGLLREFHAI 116
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1179.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KXZ7_9PHAE1.000e-1541.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0P7_9PHAE1.860e-1541.82Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5L012_9PHAE2.620e-1541.96Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHD4_9PHAE2.810e-1541.82Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KAA3_9PHAE6.220e-1541.96Reverse transcriptase domain-containing protein n=... [more]
A0A6H5LBY4_9PHAE6.620e-1542.86Reverse transcriptase domain-containing protein n=... [more]
A0A6H5L6U9_9PHAE6.660e-1541.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQE0_9PHAE6.970e-1541.07Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JR68_9PHAE7.490e-1542.73Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JLR4_9PHAE1.470e-1441.90Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1179contigA-nodosum_M_contig1179:116444..116782 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog7897.ENSLACP00000016254
PFAMsExo_endo_phos,Exo_endo_phos_2,RVT_1
Model size315
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons2
Evalue4.05e-11
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota,39TZY@33154|Opisthokonta,3BI15@33208|Metazoa,3CYKV@33213|Bilateria,487I3@7711|Chordata,4962T@7742|Vertebrata
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
Cds size315
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866595.1431706-CDS-A-nodosum_M_contig1179:116443..1165901680866595.1431706-CDS-A-nodosum_M_contig1179:116443..116590Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1179 116444..116590 +
1680866595.1539023-CDS-A-nodosum_M_contig1179:116614..1167821680866595.1539023-CDS-A-nodosum_M_contig1179:116614..116782Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1179 116615..116782 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1179.12.1prot_A-nodosum_M_contig1179.12.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1179 116444..116782 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1179.12.1

>prot_A-nodosum_M_contig1179.12.1 ID=prot_A-nodosum_M_contig1179.12.1|Name=mRNA_A-nodosum_M_contig1179.12.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=105bp
KLQGKKLGSAQYIRDENGKLLWKLDEICARWRRYFTSLLSTTSAALNRTP
TALSLGDPPVVSETKQALRSMANGKVMGPDELPAELLKLGLSDSSHEILL
AFHDI
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mRNA from alignment at A-nodosum_M_contig1179:116444..116782+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1179.12.1 ID=mRNA_A-nodosum_M_contig1179.12.1|Name=mRNA_A-nodosum_M_contig1179.12.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=339bp|location=Sequence derived from alignment at A-nodosum_M_contig1179:116444..116782+ (Ascophyllum nodosum dioecious)
AAGTTGCAGGGTAAAAAGTTAGGAAGCGCGCAGTATATCAGGGACGAGAA
CGGAAAGCTCTTATGGAAGCTTGACGAGATCTGTGCGAGGTGGAGACGAT
ATTTCACTTCTTTGCTCAGCACGACCTCGGCCGCCCTCAATCGAACAGTT
ATCTAGGGCCTACCACAAAAGCCGACAGCCCTGTCACTCGGAGACCCGCC
GGTTGTAAGTGAGACAAAACAGGCCCTGAGATCTATGGCCAATGGCAAGG
TTATGGGACCGGATGAGCTGCCGGCGGAACTGCTCAAGCTTGGGCTTTCC
GACAGTTCCCACGAAATCTTGCTCGCATTCCACGACATC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1179:116444..116782+

>mRNA_A-nodosum_M_contig1179.12.1 ID=mRNA_A-nodosum_M_contig1179.12.1|Name=mRNA_A-nodosum_M_contig1179.12.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=315bp|location=Sequence derived from alignment at A-nodosum_M_contig1179:116444..116782+ (Ascophyllum nodosum dioecious)
AAGTTGCAGGGTAAAAAGTTAGGAAGCGCGCAGTATATCAGGGACGAGAA
CGGAAAGCTCTTATGGAAGCTTGACGAGATCTGTGCGAGGTGGAGACGAT
ATTTCACTTCTTTGCTCAGCACGACCTCGGCCGCCCTCAATCGAACACCG
ACAGCCCTGTCACTCGGAGACCCGCCGGTTGTAAGTGAGACAAAACAGGC
CCTGAGATCTATGGCCAATGGCAAGGTTATGGGACCGGATGAGCTGCCGG
CGGAACTGCTCAAGCTTGGGCTTTCCGACAGTTCCCACGAAATCTTGCTC
GCATTCCACGACATC
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