mRNA_A-nodosum_M_contig1179.10.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1179.10.1
Unique NamemRNA_A-nodosum_M_contig1179.10.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1179.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1179contigA-nodosum_M_contig1179:44539..50502 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size928
Hectar predicted targeting categoryother localisation
Exons5
Cds size633
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1179.10.1prot_A-nodosum_M_contig1179.10.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1179 44539..45939 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866593.6310985-CDS-A-nodosum_M_contig1179:44538..450111680866593.6310985-CDS-A-nodosum_M_contig1179:44538..45011Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1179 44539..45011 -
1680866593.6405356-CDS-A-nodosum_M_contig1179:45309..454381680866593.6405356-CDS-A-nodosum_M_contig1179:45309..45438Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1179 45310..45438 -
1680866593.648949-CDS-A-nodosum_M_contig1179:45908..459391680866593.648949-CDS-A-nodosum_M_contig1179:45908..45939Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1179 45909..45939 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866593.6571302-UTR-A-nodosum_M_contig1179:45939..460361680866593.6571302-UTR-A-nodosum_M_contig1179:45939..46036Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1179 45940..46036 -
1680866594.4005945-UTR-A-nodosum_M_contig1179:47516..475981680866594.4005945-UTR-A-nodosum_M_contig1179:47516..47598Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1179 47517..47598 -
1680866594.4115067-UTR-A-nodosum_M_contig1179:50386..505021680866594.4115067-UTR-A-nodosum_M_contig1179:50386..50502Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1179 50387..50502 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1179.10.1

>prot_A-nodosum_M_contig1179.10.1 ID=prot_A-nodosum_M_contig1179.10.1|Name=mRNA_A-nodosum_M_contig1179.10.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=211bp
MGAPWSSAESGARTSGSCGGQTRKTNRRRTITTTKRLLRPVANVSILPPT
LEAVPGTVGRAGKVYGSLKPLSIARVAVEVTIATGARGPAFEIAAVKMAQ
DLAAVMVASIGRKFALVLLQLLPRRPTLMLLFLLAAEERERNITAAVFDW
WGLPDYLTVRGKGSEWLGRRSTSSAVAVMSAVHHFARRASMRWAWFSREE
HILVGIGGGRG
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mRNA from alignment at A-nodosum_M_contig1179:44539..50502-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1179.10.1 ID=mRNA_A-nodosum_M_contig1179.10.1|Name=mRNA_A-nodosum_M_contig1179.10.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=5964bp|location=Sequence derived from alignment at A-nodosum_M_contig1179:44539..50502- (Ascophyllum nodosum dioecious)
GGGACAGGGTATCCTTGTGATCGTGGGGCGGGGTGGGCGGGAGGAGACAA
GACGCCTTCGACGCTGTTCACCGCCGAGGCGGTGGAGGCTATCGTGGAGA
AGATTATGACCAACCGGTGAGTAATTCGCTGTGTAGAGGGGAGAGATCCT
AGGGAGTGCCGGCGTCGTTTGCTTTTGGATGTTTTCTGAAGCCGGGGGGG
AAGGGGTTGAGGGGTTGGGAGGGGTTCGCTCTACAATAATCCTCGTTGGA
TGGAATGAAATATTTCCCTGCGCTGTTTTTTTGTTGTGCTCGTTGGTTTG
TCGTTCCTCGAAAAAAAAAGGAAAGATAGGTTAGCTATCGCTATACGCTC
GCTAAGGGATAGGTGTGTAACTATCGTCAGCTTAAAGCCCTGCTTGCCAT
GAGTCGCAACATTAGTCAGCTTCTAGCTGGTGGGATGCAGGCTGAGGCTT
TGTCGTGTCGGAGGCTAAGGCTTTGTTTTTGTGGGTGTGAGTGAGAAGTG
GTCTTTGCGATATGTAGTCGGGCCTAGGAGTATACAAATAGGTCTATCTA
CACAACATGTATAAATAACGGGAATGTTCAACAGAACCCTCTATGCGTAG
AATCCTGTGTGACTAAGGAACTTTCGATCTCTCCTCGGTTCTCGCCAACA
ACTTTTATCGCGAAGCAATTTCAGTACTCCTACTAGCACGCCTTTGTACA
GCAGTATTAATAGGCTCTATGCGCAGAACCCTGTGCTCGCAATTATTGAT
GATGAGAGCGTGAAGGTCTATCTACACATGTACAACGGGAATGTTCAGCA
GAACCCTCTATGCTTAGAATTCTGTGTGCCTTAAGAACTTTTCCATCTCT
GCCCGGTTGTGGCGAACGATTTTTGATCCCTATACAAATTCAGTGCTCTT
ACGAGCACGCCTTTTTACAGCAGTAGACTCTATGCGCAGAAAACTCTGTG
TTCGAAATTGTTCAAGAGAGAGTGAAGGTCTGTACAACGGGAATGTCCAG
CAGAACCCTTTACGCGCAGCATCCTGTGTCACTAAGGATATTCCCGTCTC
TCCCCGGTTCTCGCCTACGATTTTTTATCGCGATGCAAATTCAGTACTCC
TACTTAACACTTCTTTCTTTGTACAGCAATATTAAATTAATAGGCTCTAT
GCGCAAAACCCTGTGTTCGAAGTTGTTCATGATGAGAGCGTGAAGGTCTA
TCCACACATGTACAACGGGAATGTTCAGCAGAACCCTCTATGCTTAGAAT
CCTGTGTGCCTTAAGAACTTTTCCATCTCTGCCCGGTTGTGGCGAACGAT
TTTTGATCCCTATGCAAATTCAGTGCTCTTACGAGCACGCCTTTTTACAG
CAGTAGACTCTATGCGCAGAAAACCCTGTGTTCGAAATTGTTCAAGAGAG
AGTGAAGGTCTGTACAACGGGAATGTCCAGCAGAACCCTTTACGCGCAGT
ATCCTGTGTCACTAAGGATATTCCCGTCTCTCCCCGGTTCTCGCCTACAA
TTTTGTATCGCGATGCAAATTCAGTACTCCTACTTAACACTTCTTTCTTT
GTACAGCAATATTAAATTAATAGGCTCTATGCGCAGAACCCTGTGTTCGA
AGTTGTTCATGATGAGAGCGTGAAAGTCTATCCACACATGTACAACGGGA
ATGCTCAGCAGAACCCTCTATGCGTAGAATCCTGTGTGAGTGAAGAATTT
TCCATCTCTCCCCGGTTCTCGTTAACGATTTTTGATCCCGATGCAAATTC
AGTACTCTTACGAGCACGCCTTTGTCCAGTAGTAGACTCTAAACCCTTGA
ACCCTGTGTTTGAAATTGTTCAAGGGAGCGTGAAGGTCTGTACAACGGGA
ATGTTCAGCAAAACCCTTTATGCGCAGCATCCTGTCACTAAGAATCTTTA
CATCTCTCCCCGGTTCTCGCCTACGACTTTGTATCGCGAAGCAATTTCAG
TACTCCTACTAGCACACCTTTGTACAGCAGTATTAATAGATTCTATGCGC
AGAACCCTGTGTTCGAAATTGTTCATGATGAGAGCGTGAAGGTCTATCTA
CACATGTACAACGGGAATGTTCAGCAGAACCCTCTGTGCGTAGAATCCTG
TGTGACTTAAGGGATTTTCCATCTCTCCCCGGTTCTCGCCGATGATTTTG
ATCCCGATGCAAATTCAGTACCCTTACGAGCACACCTTTGTCCAGCAGTA
GACTCTAAACCCTGTGTTCGAAATTGTTCAAGGGAGCGTGAAGGTCTGTA
CAACGGGAATGTCCAGCAGAACTCTTTATGCGCAGCATCCTGTGTCACTC
CATCTCTCCCCGGTTCTCGCCTACGTTTTTTATCGCCGGGCAAATCCAGC
ACCCTGCGGTGCACAGTTTTTGATACACTCCAGCCCAAATCGATGCACCC
TGCAGATTAAAAGCTCACTACGCTCGAATATAGCGACCCCGGAATAGGAC
ATACTACACCGTTCCGAAATCGATCAAAGAAGTACCGAATATAAAGACCC
CTAAATAGAACATACATACGCCGTTCCGAAATGGATCAGAGAATTACCGA
ATATAAGATCAAAGAAGTACCGAATATAACGACCCCGAAATGGATCAAAG
AAGTCCCGAAATGGTATTCTGATTGGTCAACGTGCACAGTTTTTGATACA
CTCAAGCCCAAATTGATGGACCTTACAGATTATAAGCTCACTACGCTCGC
AAAAATAAATAAATAAATAAATAAAAATGACAAATAATGTTTTTTCGCCT
CTTCCCAGCCTGCAAAAAGTAGAAAAAAAAATGAAACCGAAGCAGTTTTC
ATTTAGTAGATGAAAAACCCATGTGCTCGATTACGGTTGACGTACCCATC
ACGCCGGCTTCTTTGTACTTTTGTCACTGTCATCATACTACCGTATCATT
CTAGGTCGACGGAGCGTACCGACACTCTGGAAGAGACCGGCTATACCACC
AGAACCTGGTCGCAAAACGCGACGTGGTCGAAAGAGGTGCGTGACTGGCT
CCGTGTGCCATAGGGTGGCGCGGTGCTTCCGTGGCTCAGTATCTAATACT
GTGTACCGTACTTTTCGTTACCCTTTACCTCATTCAAAGACGAGTAACGA
ACAACTTGAGAAGCACTCTGAAAGGTCTAAACACACTCGTATATAAATCT
ATGTTTTTTTTTCTTTGTTTTTTACTTTTGCACATTTTTATTCTATTTTT
TCAATGCTTTTTCCTTGTTCAAAAGTAACACAACAGTGCGTACTCGAATC
AAACGACGTGAATTGGTTGGGATCGCCTCAAAAATCATGGAAACAGCTTG
TGCGAAAGTACACTTGTAATAGAGCTATATTAGAGGTGTACCGTAGCGGC
AACGTGAACGAAAACCATCAAAATCCCCTCATCCCTTCCTCCGATGAAGA
AATAAAAAAGATATAGACACATATTATATTGAATATATATGTCGACCACG
GCACTTTCAGCATGCCCACTCATTCCAATAGTAGGTGTGGGAAAGAGAGG
CGAATATTGAATGGTCCGTGGTGACCTGCCAAGGCAGCACTCGCTCAGAT
CTACCTTGAGGTTTGCTGGCCCTTTGCCGACGGACTCTCGGCAGTGAAGG
CCATCGGTACGCAGTTGTGTGACCTGATAAAACTCGGGCCTGGCCCGATG
GCGTATGGCGGTTTTAGATAAATAAATGGACGCCGCCGCGGAACTCGGGA
GGAATCCCGCAGGTTGGCACCAGATTCAGCCTGAGTATGGAGATGAGCAG
GCTGACGCGGGACGGGACTGTCGAACCCGTCTCGCGAGACCAAATTCTCA
GGCGCGAACGCGAAGAGGGAAATATCCATTTTCCCACTCAGCTGACCACG
AGCAGGATTCGTGACCTCACCCGGTTGATCCATTCTCTTGCTATATGTGT
GACCACACATACATACATTAAGTGGGTGTGGGAAAGAGAGGCGAATATTA
ATTGGTCCATGGTGATCTGCCAAGGCAGCACCCGTTCGGAACTACCTTGA
GGTTTACTGGCCCTGTGCCGGCGGACTCTCGGCAGTGAGCGCCATCGGTA
CGCAATTGCGTGACCCGATAAACTCGGGACTGACCCGATGGCGTATGGCG
GTTTCATAAATGAACGCCGCCGCGGAACTCGGGAGGAATCCCGTAAGTAA
GCACCAGATTCAGCCTGAGTATGGAGATGAGCAGGCTGACGCGGGACGGG
ACGGCTGAACCTGTCTCGCGAGACCAAAATTAGGCACGCACGGGGACAGG
GGAATATTATTTTCCCTGTTCAGCTGACCACGAGCAGGATTGGTAATCTT
ACCCGGTTGATCCATACTCTGCTATATGTGATGACCATACATACATACAT
ACATACATACATACATACTCGCGTCTCTCTTCTCTCTTATGGCTCTTTTT
TTTCATCCCTTTTCTTAGCCTCCCTGACATTTTTTGTTCTCCTTTTTCTT
TTCCCCACAATGAAAGGACGACGAGCGGCTCTTGCAAGCCGTAGGGGCAA
GTCTGGGGGAATCCGCCGATTCTCCCAGAGAGATTGACTGGGAAGTGGTT
GCCAGAAAATTACATGGGCGCACCCTGGAGCAGTGCAGAATCAGGTGCGC
AATGATACGTTGTTTGTGTGCTAAGAATCCGAGCACTTCTGGAGAGAACG
GGGATGTATGTGTGTGTAGGGGTGTATTTTCATTTACTCAATTGCACGTA
ACCGCGCAATCCGATCCTATCATCCTATAATGGCCATTCTATGCTACTGG
CATTGATTTTCCTCAAGAGGGGATCAATGATACTTGCTACGAAAGCTTCA
GATCAAGGGGACACTCTACAGCCAGTTTGTATTTGAAGCCTTGAGCACCT
TGCGCTTCCGTCTCCACTTTCTTGTGTGTGCGTCTGTACTGTAAAAATTA
ACACATAAATCGAGTCTCCCCCGCCACCTCACCGCTTTCTCGCTCTGTAC
AAACTCCTGCAACCCCTGCAAAATCTCCTCCCGGTGTCACTCCTTGCTTG
TAGCGAATCCCTCCCTCACTGCCCCGACCTTTTGCTCTTTCTGATGGCTC
TGTCGCGGCTCCAGGTGCTCGAACCTCGGGATCGTGCGGTGGACAAACGA
GGAAGACCAACCGTCGCAGGACGATCACAACAACGAAACGGCTGTTGCGA
CCGGTGGCGAATGTGTCTATCCTACCACCAACCCTTGAGGCAGGTACGAC
AGTAGCGTCCCGTGACAAGTCATTGACAAGTCATCGTGTTTCGTATCGAT
GGGGGGGGGGGGGGAGTCGGAAGGGCTACGTTCAACAGCGCAGATTGAGG
CTGGGAATCTGAAATCGGGACGATTTTAAGTTTTCCGCCAAAAATCCTTG
AAATTCTTGGATCATTTTTTTACGGAGCCGAAAATCGGAAATGAGTGAAA
TTATTTCCGATTCCAGGCAGAAAACCCTAGTTACACACACCAACCCCCAA
GTTGTCCCCCATCCCCGCCTGCGCACCGATATCATGTACAGTACCAGGTA
CAGTAGGACGGGCGGGGAAGGTATATGGCTCTCTCAAGCCTCTGTCGATT
GCGAGGGTCGCGGTCGAGGTTACGATCGCCACCGGGGCCCGCGGGCCCGC
GTTCGAGATAGCGGCGGTGAAGATGGCGCAGGATCTGGCGGCGGTGATGG
TAGCATCGATCGGAAGGAAGTTCGCGCTGGTACTGTTGCAGCTCCTCCCA
AGGCGACCGACGCTGATGCTGCTCTTTCTCCTGGCAGCCGAGGAGCGAGA
GCGAAATATCACAGCCGCGGTCTTTGATTGGTGGGGGCTGCCGGATTACC
TCACCGTACGAGGTAAGGGGAGTGAGTGGTTGGGAAGAAGATCTACATCT
TCAGCCGTGGCGGTGATGTCGGCTGTGCATCATTTCGCGCGGAGGGCTTC
GATGCGGTGGGCATGGTTTTCCAGAGAAGAGCATATCCTGGTTGGGATAG
GCGGGGGCCGGGGG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1179:44539..50502-

>mRNA_A-nodosum_M_contig1179.10.1 ID=mRNA_A-nodosum_M_contig1179.10.1|Name=mRNA_A-nodosum_M_contig1179.10.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=633bp|location=Sequence derived from alignment at A-nodosum_M_contig1179:44539..50502- (Ascophyllum nodosum dioecious)
ATGGGCGCACCCTGGAGCAGTGCAGAATCAGGTGCTCGAACCTCGGGATC
GTGCGGTGGACAAACGAGGAAGACCAACCGTCGCAGGACGATCACAACAA
CGAAACGGCTGTTGCGACCGGTGGCGAATGTGTCTATCCTACCACCAACC
CTTGAGGCAGTACCAGGTACAGTAGGACGGGCGGGGAAGGTATATGGCTC
TCTCAAGCCTCTGTCGATTGCGAGGGTCGCGGTCGAGGTTACGATCGCCA
CCGGGGCCCGCGGGCCCGCGTTCGAGATAGCGGCGGTGAAGATGGCGCAG
GATCTGGCGGCGGTGATGGTAGCATCGATCGGAAGGAAGTTCGCGCTGGT
ACTGTTGCAGCTCCTCCCAAGGCGACCGACGCTGATGCTGCTCTTTCTCC
TGGCAGCCGAGGAGCGAGAGCGAAATATCACAGCCGCGGTCTTTGATTGG
TGGGGGCTGCCGGATTACCTCACCGTACGAGGTAAGGGGAGTGAGTGGTT
GGGAAGAAGATCTACATCTTCAGCCGTGGCGGTGATGTCGGCTGTGCATC
ATTTCGCGCGGAGGGCTTCGATGCGGTGGGCATGGTTTTCCAGAGAAGAG
CATATCCTGGTTGGGATAGGCGGGGGCCGGGGG
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