mRNA_A-nodosum_M_contig1178.9.4 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig1178.9.4 vs. uniprot
Match: A0A6H5KD03_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD03_9PHAE) HSP 1 Score: 1158 bits (2995), Expect = 0.000e+0 Identity = 679/1149 (59.09%), Postives = 787/1149 (68.49%), Query Frame = 1
Query: 1 SYERVNKPRPYREVAAEVVAKGASMPKKRLVSLLRELCIRIGDNSVCDGAFFGTLLEILRSAKDGDWDGKTVRLVHFFVRGMVTVQGDTEGRALGSQWEGRGITEAQILQAIECFREETEHRSTLRQLPAFQTVAMLCQLACEAGMSGYRSPLEMLKEATLAPLKSLRAQDRPDRGEKRRSKGFRHRLENFQGGIEISSSIFSAIRRCPPLARDGDILHAVIAGCCSENPIAARHAFAILADQATQCPEEVSKMLLSKAMLIPTTVGMLQAPVGSGAFGNVPNLTDSLACVYYLRAIKALAFAEALDDTMRLDMYRTMVSSVPDARHRVALEAMQCLLDHPRAWELLVNAQRESRDADIFRRVVNRIKLCVEEATAPAXXXXXXXXXXXXXXXXXXXXXXXXXXFRSRSLSPTR---AAIGDAGS---------GGCGEDGGSAPVMTAAADGAQCNWALAHAACRVCRVVGRTFQVAISYQTMQSQNRTGSDGRF---STLASEPDAKAS--SAPNGAPGTHPSPPPVKVDFGSGGHDRSKGGEGAPVAPLAKEATSGAAFNLLGLPPSPAPTSGV-RGASAWGETVSEGLWGRGDV-------IAGQVVEEQNTAAIQDLCRVLQQQRLLESPHLHVRSLALEAMFLLVPDPSPLDPQLRGLWDWLQQRVQQCPSTLPVSVLSDLVDTLLTRVQCSAASRQEVIPIALSLTESFMYQVPSEEMGRCLLRAWSQCVGYGGRAREAVLQSVYRLLDTNIALPPEAPRHAAATSKDRGSASGF--DQGTFRERHVRGRAIDGLTRHSTAVFKAPAGKTIVDTITYRFSSFRIPGSEMCRRAVNGGSAILGGEEVSRWGKSWGGAE-DWRTSARLLYLRERSAATRMKRSAYWFLGEYCRQLTGLPAERDGASSTLNPSPPPKPTQANADLLDVWKNSV-TPARSASGSLKVG-GFDGADAAVGSGTVAHPVVSAMNGATVSILLRLKHASMFEDFQTRYTCASALCKIALRLPEPVRFDAYCFLKTLTSSADMFPLVAPRGEIGAGPECHLNNGHRGDVSLQAYHREQEALMERIEAAGAFGIGEVLTPVLDYLDCVYARPD----------ENAFPEETLA---STAREQEFLDMYRRLLDGRGAARSP 3318
SYE VN+PR Y VAAEVVAKGA+MPKKRLV LLRELCIRIGD +VCDGAFFG LL IL SAK+GDWDGK VRLVHFFVRGMVTVQGDTEGR LGS WEGRGIT+ QIL AIECFR+E+EHRS++RQ+PAF TVA LCQLA +G+ G SP+E+L+E TL PL+SL+AQ+RP+RG K + + R R E F+ +++S++IFSAIRRCP LARD IL V+ GCCSEN +AARHAFAILAD A + P+ VS+ LLSKAML+PTTVGMLQAP G A G PNL DSLACVYYLRAIKALAFAEALDDTMRLDMYRTMVSSV DARHRVALEAMQCLLDHPRAWELLVNAQRESRDADIFRRVV+RIK+CVEEATAPA SR SPT AA D + G+ P A++ A CNWALAHAACRVCRVVGRTFQVAISYQTMQ+QNR G DG ST+ + P A +S G+ + P PP V G + G +G+ P+ E +G+AFNLLGLPPSPAP SG+ R SAWG T +A + AAI+DLCR LQQ RLLESPHLHVRSLALEAMFLLVPDPSPLDPQLRGLWDWLQQRV+QCPSTLP +VLS+LVDTLLTRVQCSA SR+EVIPIAL+LTESFMYQVPSEEMGRC+LRAW QC GYGGRARE+VLQSVYR+LD +IALPP+ PR A A++ + +++G D+G RHVRG A + TR S GGA+ D + RL YLR +SAATR+KRSA+WFLGEYCRQLTG PAE +S + +PPP T N +LLDVW + V +P + G L G G GA+A+ AHPVVS MNGAT+SIL+RLKHA+MFEDFQTR TCASALCKIALRLP+P+RFDAYCFL+ L SA +FPLV R + G C G+ L+ + REQEAL ERIE AGA+GI EV+TPVLDYL C+Y+ PD + + P E +A E + L +YRR+LD GAA P
Sbjct: 81 SYELVNRPRAYWTVAAEVVAKGATMPKKRLVPLLRELCIRIGDYTVCDGAFFGALLVILGSAKEGDWDGKAVRLVHFFVRGMVTVQGDTEGRVLGSHWEGRGITQRQILDAIECFRQESEHRSSVRQIPAFHTVATLCQLASVSGVGGQPSPVEVLRETTLTPLRSLQAQERPERGGKTKGRALRQRQEAFEESLQVSAAIFSAIRRCPALARDQSILPPVLLGCCSENHLAARHAFAILADLAMKSPDVVSQTLLSKAMLVPTTVGMLQAPGGLAASGGEPNLADSLACVYYLRAIKALAFAEALDDTMRLDMYRTMVSSVSDARHRVALEAMQCLLDHPRAWELLVNAQRESRDADIFRRVVDRIKVCVEEATAPATAAAAATAAHDGSTAA------------SRPGSPTELPPAAPADLSNKKKKLXXXXXXXXXXAGNGPAGVGASE-AYCNWALAHAACRVCRVVGRTFQVAISYQTMQNQNRAGVDGSSGGSSTVLASPAATSSVGGERRGSGTSGPRPPSVNARHGFSEGLLASGRDGS--QPVTPEVGTGSAFNLLGLPPSPAPRSGITRAPSAWGPTAGXXXXXXXXXXXXXXRRLARDGGRDGRAAAIRDLCRALQQHRLLESPHLHVRSLALEAMFLLVPDPSPLDPQLRGLWDWLQQRVEQCPSTLPDTVLSELVDTLLTRVQCSATSREEVIPIALALTESFMYQVPSEEMGRCVLRAWCQCAGYGGRARESVLQSVYRILDRSIALPPDNPRAAFASAANNRASTGSVGDRGGA-ARHVRGMASEDWTRQPI---------------------------------------------------STGGAQGDPSETPRLKYLRAKSAATRLKRSAFWFLGEYCRQLTGAPAE---SSQNHDQTPPPAKTGGN-ELLDVWTSPVPSPTKGGMGRLPAGLGDMGAEASA----EAHPVVSGMNGATISILMRLKHAAMFEDFQTRSTCASALCKIALRLPDPIRFDAYCFLQGLADSAALFPLVPSRQDNDPG--CS------GEGLLEGHWREQEALFERIENAGAYGIREVVTPVLDYLGCLYSMPDSEGTRPGSSQDGSLPTERTEVGQRSAMETKLLGVYRRVLDEHGAAPGP 1146
BLAST of mRNA_A-nodosum_M_contig1178.9.4 vs. uniprot
Match: D7FJG9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJG9_ECTSI) HSP 1 Score: 1090 bits (2820), Expect = 0.000e+0 Identity = 643/1120 (57.41%), Postives = 744/1120 (66.43%), Query Frame = 1
Query: 73 MPKKRLVSLLRELCIRIGDNSVCDGAFFGTLLEILRSAKDGDWDGKTVRLVHFFVRGMVTVQGDTEGRALGSQWEGRGITEAQILQAIECFREETEHRSTLRQLPAFQTVAMLCQLACEAGMSGYRSPLEMLKEATLAPLKSLRAQDRPDRGEKRRSKGFRHRLENFQGGIEISSSIFSAIRRCPPLARDGDILHAVIAGCCSENPIAARHAFAILADQATQCPEEVSKMLLSKAMLIPTTVGMLQAPVGSGAFGNVPNLTDSLACVYYLRAIKALAFAEALDDTMRLDMYRTMVSSVPDARHRVALEAMQCLLDHPRAWELLVNAQRESRDADIFRRVVNRIKLCVEEATAPAXXXXXXXXXXXXXXXXXXXXXXXXXXFRSRSLSPTR---AAIGDAGS-----------GGCGEDGGSAPVMTAAADGAQCNWALAHAACRVCRVVGRTFQVAISYQTMQSQNRTGSDGRFSTLASEPDAKASSAPNGAPGTHPSPPPVKVDFGSGGHDRSKGGEGAPVAPLAKEATSGAAFNLLGLPPSPAPTSGVRGASAWGETVSEGLWGRGDVIAGQVVEEQNTAAIQDLCRVLQQQRLLESPHLHVRSLALEAMFLLVPDPSPLDPQLRGLWDWLQQRVQQCPSTLPVSVLSDLVDTLLTRVQCSAASRQEVIPIALSLTESFMYQVPSEEMGRCLLRAWSQCVGYGGRAREAVLQSVYRLLDTNIALPPEAPRHA-AATSKDRGSASGFDQGTFRERHVRGRAIDGLTRHSTAVFKAPAGKT------IVDTITYRFSSFRIPGSEMCRRAVNGGSAILGGEEVSRWGKSWGGAE--DWRTSARLLYLRERSAATRMKRSAYWFLGEYCRQLTGLPAERDGASSTLNPSPPPKPTQANADLLDVWKNSV-TPARSASGSLKVG-GFDGADAAVGSGTVAHPVVSAMNGATVSILLRLKHASMFEDFQTRYTCASALCKIALRLPEPVRFDAYCFLKTLTSSADMFPLVAPRGEIGAGPECHLNNGHRGDVSLQAYHREQEALMERIEAAGAFGIGEVLTPVLDYLDCVYARPD----------ENAFPEETLA---STAREQEFLDMYRRLLDGRGAARSP 3318
MPKKRLV LLRELCIRIGD +VCDGAFFG LL ILRSAK+GDWDGK VRLVHFFVRGMVTVQGDTEGR LGS WEGRGI+ QI+ AIECFR+E+EHRS++RQ+PAF TVA LCQLA +G+ G SP+E+L+E TL PL+SL+AQ+RP+RG K + + R R E F+ +++S++IFSAIRRCP LARD IL V+ GCCSEN +AARHAFAILAD A + P+ VS+ LLSKAML+PTTVGMLQAP G + G PNL DSLACVYYLRAIKALAFA ALDDTMRLDMYRTMVSSV DARHRVALEAMQCLLDHPRAWELLVNAQRESRDADIFRRVV+RIK+CVEEATAPA SR SPT AA D G G+ P A++ A CNWALAHAACRVCRVVGRTFQVAI P K++ S + AP + A + PP+ AP ++ +VVEEQNTAAI+DLCR LQQ RLLESPHLHVRSLALEAMFLLVPDPSPLDPQLRGLWDWLQQRV+QCPSTLP +VLS+LVDTLLTRVQCSA SR+EVIPIAL+LTESFMYQVPSEEMGRC+LRAW QC GYGGRARE+VLQSVYR+LD +IALPP+ PR A A+ + DR S RHVRG A + TR + A + I TI S GS ++NG S ILGG+E SRWG + GG D + RL YLR +SAATR+KRSA+WFLGEYC QLTG PAE +S + SPPP T N +LLDVW + V +P + +G L G G GA+A+ AHPVVS MNGAT+SIL+RLKHA+MFEDFQTR TCASALCKIALRLP+P+RFDAYCFL+ L SA +FPLV R + G C G+ L+ + REQEAL ERIE AGA+GI EV+TPVLDYL C+Y+ PD + + P E +A E + L +YRR+LD GAA P
Sbjct: 1 MPKKRLVPLLRELCIRIGDYTVCDGAFFGALLVILRSAKEGDWDGKAVRLVHFFVRGMVTVQGDTEGRVLGSHWEGRGISPRQIIDAIECFRQESEHRSSVRQIPAFHTVATLCQLASVSGVGGQPSPVEVLRETTLTPLRSLQAQERPERGGKTKGRALRQRQEAFEESLQVSAAIFSAIRRCPALARDQSILPPVLLGCCSENHLAARHAFAILADLAMKSPDVVSQTLLSKAMLVPTTVGMLQAPGGLASAGGEPNLADSLACVYYLRAIKALAFAGALDDTMRLDMYRTMVSSVSDARHRVALEAMQCLLDHPRAWELLVNAQRESRDADIFRRVVDRIKVCVEEATAPATAAAAATAAHDGSTAA------------SRPGSPTELPPAAPADLGHKKXXXXXXXXXXXXXXXAGNGPAGVGASE-AHCNWALAHAACRVCRVVGRTFQVAIR----------------------------------------PCRTKIELVS----TAAAAVAAPSWQARLRQQASAESVVAAGPPARAPRPSTPATAS-----------------RKVVEEQNTAAIRDLCRALQQHRLLESPHLHVRSLALEAMFLLVPDPSPLDPQLRGLWDWLQQRVEQCPSTLPDTVLSELVDTLLTRVQCSATSREEVIPIALALTESFMYQVPSEEMGRCVLRAWCQCAGYGGRARESVLQSVYRILDRSIALPPDNPRTAFASAANDRASTGSVGDRGGAARHVRGMASEDWTRQPISTGGAQGSEDGSQPGRIPPTIVSGGGS---SGSSGFATSLNGVSMILGGDEASRWGNAGGGGAGGDPSETPRLKYLRTKSAATRLKRSAFWFLGEYCCQLTGAPAE---SSQNPDQSPPPAETGGN-ELLDVWTSPVPSPTKGGTGRLPAGLGDMGAEASA----EAHPVVSGMNGATISILMRLKHAAMFEDFQTRSTCASALCKIALRLPDPIRFDAYCFLQGLADSAALFPLVPSRQDNDPG--CS------GEGLLEGHWREQEALFERIENAGAYGIREVVTPVLDYLGCLYSMPDSEETRPSSSQDGSLPTERTEVGQRSAMETKLLGVYRRVLDQHGAAPGP 1027
BLAST of mRNA_A-nodosum_M_contig1178.9.4 vs. uniprot
Match: A0A835Z8W3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8W3_9STRA) HSP 1 Score: 243 bits (619), Expect = 4.280e-61 Identity = 336/1159 (28.99%), Postives = 438/1159 (37.79%), Query Frame = 1
Query: 589 ISSSIFSAIRRCPPLARDGDILHAVIAGCCSENPIAARHAFAILADQATQCPEE-----------------------------VSKMLLS-------------------KA-------MLIPTTVGMLQAPVGSGAFGNVPNLTDSLACVYYLRAIKALAFAEALDDTMRLDMYRTMVSSVPDARHRVALEA------------------------------------MQCLLDHPRAWELLVNAQRESRDADIFRRVVNRIKLCVEEATA-----------PAXXXXXXXXXXXXXXXXXXXXXXXXXXFRSRSLSPTRAAIGDAGSGGCGEDGGSAPVMTAAADGAQCNWALAHAACRVCRVVGRTFQVAISYQTMQSQ----------NRTGSDGRFSTLASEPDAKASSAPNGAPGTHPSPPPVKVDFGSGGHDRSKGGEGAPVAPLAKEATSGAAFNLLGLPPSPAPTSGVRGASAWGETVSEGLWGRGDVIAGQVVEEQNTAAIQDLCRVLQQQRLLESPHLHVRSLALEAMFLLVPDPSPLDPQLRGLWDWLQQRVQQCPSTLPVSVLS----------------DLVDTLLTRVQC-----------------------SAASRQEVIPIALSLTESFMYQVPSEEMGRCLLR----------------------------------------------AWSQCVGYGGRAREAVLQSVYRLLDTNIALPPEAPRHAAATSKDRG--------SASGFDQ--------GTFRERH----------------------------------------------VRGRAIDGLTRHSTAVFKAPA-GKTIVDTITYRFSSFRIPGSEMCRRAVNGGS-----AILGGEEVSRWGKSWGGAEDWRTSARLLYLRERSAATRMKRSAYWFLGEYCRQLTGLPAERDG------ASSTLNPSPP------PKPTQANADLLDVWKNSVTPARSASGSLKVGGFDGADAAVGSGTVAHPVVSAMNGATVSILLRLKHASMFEDFQTRYTCASALCKIALRLPEPVRFDAYCFLKTLTSSADMFPLVAPRGEIG-AGPECHLNNGHRGDVSLQAYHREQEALMERIEAAGAFGIGE---------VLTPVLDYLDCVYA 3204
+S + SA+RR L R +L V+ C S N + ARHAFA+L +QA VS +L KA +L PTTV A G+ N PNL D LACVYYLR +K L FA L+ RLD YRT+ +SV D RHRVALEA MQCL+DH RAW LLV+AQRESRDAD+FRRVV+ ++ C+ A XXXXXXXXXXXXXXXXXXXXXXXXXX A GA +W LAHAACR R VG+T Q AIS++TM ++ SE + +P+G + V SGG +P++PL L LP +P + T + + E N AAI+DLCR + L+ PH H AMFLLVPDPS DP+L+ +W +Q +++ CP++LP + L LV +L+ R++ S ASR ++P AL++ ESF+ QVP++ +GR L+ AW QC+ YG + RE VLQSVYR LD + PEA R G AS Q G R R+ + + H+ V PA G D R ++ + + RR + G+ A+L R G G AED A + R AA R++R A WF+GEYC +L GLP R ++ L+P P P ++ D W+ +RL+ A++FED TR+ SALC +ALRLPEP RFDAY FL+ L + F + P G AGP G RG V QA A +E A AFG+ V PVL YLD +YA
Sbjct: 404 LSRVVLSAVRRSAALRRRASLLPRVLEACRSPNAVTARHAFAVLLEQAASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVSMVLAEXXXXXXXXXXXXXXXAMDPKAVAEGVYPLLQPTTV----AAAGALEIHNQPNLEDPLACVYYLRVLKTLVFAPELEAQSRLDFYRTIANSVSDTRHRVALEASDVFNLNFNPVPHTVAGATAVGSLTAQSWNYRGTAAMQCLMDHERAWTLLVDAQRESRDADLFRRVVDALRRCLAAAAGVDLLPGAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPGAP-HWPLAHAACRAARAVGQTLQKAISFETMAARAXXXXXXXXXXXXXXXXXXXXXXSEAVFFGAGSPSGR---------LPVSPRSGG---------SPLSPL------------LDLPSTPHSVAAXXXXXXXXSTYNSP-----HITTADAAEASNMAAIRDLCRAISGHGFLDCPHRH-------AMFLLVPDPSHRDPELQEMWAEVQMKMEACPASLPEASLGAPHGGVPASLSEASLVHLVTSLMARMEACXXXXXXXXXXXXXXXXXXXXXXSEASRGAIVPAALAIAESFVRQVPTDAVGRALVXXXXXXXXXXXXXXXXXXRIVPAAXXXXXXXXXXXXXXXXXXXXXXXAWMQCLTYGPQCREVVLQSVYRTLDAPL---PEAARQPIRLPGGAGXXXXGDWLGASDAPQLRRRMSLGGAHRRRNSXXXXXXXXXSSGADAEVCMCAVGPRERRRCAAAPSLPVPRLDAVAANRKPLHKCNSHTAMVALRPAIGVYAADMTHERCAAAHARATPLLRRRPSSGANDAIAALLSSNADDRRGGGRG-AEDPDALA-----QARGAARRLQRLALWFVGEYCCELVGLPPPRRHQVVPPLGATPLSPGDALLKLSVPGPLGSSKDDPCGWQQDPXXXXXXXXXXXXXXXX--------------XXXXXXXXXXXXXMRLRAAAVFEDAHTRHAAVSALCFVALRLPEPARFDAYLFLRGLVACE--FDIADPAPYCGGAGPA----GGLRGYVEAQA------AACAALEDAPAFGLAXXXXXXXXXXVARPVLAYLDMLYA 1480
BLAST of mRNA_A-nodosum_M_contig1178.9.4 vs. uniprot
Match: D7FJG8_ECTSI (UDP-galactose translocator, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJG8_ECTSI) HSP 1 Score: 69.7 bits (169), Expect = 1.300e-8 Identity = 35/46 (76.09%), Postives = 38/46 (82.61%), Query Frame = -3
Query: 4448 QVTKHAGSIQKGFALIGGILVTAAVQSTLERSALTMVR*RRGAFCA 4585
QVTKHAGS+QKGFALIGGILVTAAVQST+E+SALTM A A
Sbjct: 276 QVTKHAGSVQKGFALIGGILVTAAVQSTMEKSALTMTHWTAAALVA 321 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1178.9.4 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1178.9.4 >prot_A-nodosum_M_contig1178.9.4 ID=prot_A-nodosum_M_contig1178.9.4|Name=mRNA_A-nodosum_M_contig1178.9.4|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=1083bp MPKKRLVSLLRELCIRIGDNSVCDGAFFGTLLEILRSAKDGDWDGKTVRLback to top mRNA from alignment at A-nodosum_M_contig1178:159114..173237+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig1178.9.4 ID=mRNA_A-nodosum_M_contig1178.9.4|Name=mRNA_A-nodosum_M_contig1178.9.4|organism=Ascophyllum nodosum dioecious|type=mRNA|length=14124bp|location=Sequence derived from alignment at A-nodosum_M_contig1178:159114..173237+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1178:159114..173237+ >mRNA_A-nodosum_M_contig1178.9.4 ID=mRNA_A-nodosum_M_contig1178.9.4|Name=mRNA_A-nodosum_M_contig1178.9.4|organism=Ascophyllum nodosum dioecious|type=CDS|length=3249bp|location=Sequence derived from alignment at A-nodosum_M_contig1178:159114..173237+ (Ascophyllum nodosum dioecious)back to top |