mRNA_A-nodosum_M_contig1178.16.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1178.16.1
Unique NamemRNA_A-nodosum_M_contig1178.16.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig1178.16.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 2.920e-24
Identity = 46/72 (63.89%), Postives = 57/72 (79.17%), Query Frame = 1 
Query:    1 MVELGFEKGFNSVPLYLDNTSTLHVAGNRTYSPRAKHITLRYFFVQELVEEGMITIHYVNTQDQLADLGTKH 216
            M ELGF K F  +P+Y DNT+TLH  GNR++S R KHI LR+FF++ELV EG I+IHYV T+D LAD+GTKH
Sbjct:  908 MTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVRTEDNLADIGTKH 979
[Close]
BLAST of mRNA_A-nodosum_M_contig1178.16.1 vs. uniprot
Match: A0A6H5KMK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMK0_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 4.690e-24
Identity = 44/72 (61.11%), Postives = 55/72 (76.39%), Query Frame = 1 
Query:    1 MVELGFEKGFNSVPLYLDNTSTLHVAGNRTYSPRAKHITLRYFFVQELVEEGMITIHYVNTQDQLADLGTKH 216
            M ELGF K F  +P+Y DNT+TLH  GNR++S R KHI LR+FF++ELV EG I+IHY  T+D LA +GTKH
Sbjct:  123 MTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYAPTEDNLAHIGTKH 194
[Close]
BLAST of mRNA_A-nodosum_M_contig1178.16.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 5.490e-24
Identity = 46/72 (63.89%), Postives = 57/72 (79.17%), Query Frame = 1 
Query:    1 MVELGFEKGFNSVPLYLDNTSTLHVAGNRTYSPRAKHITLRYFFVQELVEEGMITIHYVNTQDQLADLGTKH 216
            M ELGF K F  +P+Y DNT+TLH  GNR++S R KHI LR+FF++ELV EG I+IHYV T+D LAD+GTKH
Sbjct: 1577 MTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKH 1648
[Close]
BLAST of mRNA_A-nodosum_M_contig1178.16.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 1.470e-23
Identity = 45/72 (62.50%), Postives = 56/72 (77.78%), Query Frame = 1 
Query:    1 MVELGFEKGFNSVPLYLDNTSTLHVAGNRTYSPRAKHITLRYFFVQELVEEGMITIHYVNTQDQLADLGTKH 216
            M ELGF K F  +P+Y DNT+TLH  GNR++S R KHI LR+FF++ELV EG I+IHY  T+D LAD+GTKH
Sbjct:  348 MTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYFPTEDNLADIGTKH 419
[Close]
BLAST of mRNA_A-nodosum_M_contig1178.16.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 6.450e-23
Identity = 45/72 (62.50%), Postives = 56/72 (77.78%), Query Frame = 1 
Query:    1 MVELGFEKGFNSVPLYLDNTSTLHVAGNRTYSPRAKHITLRYFFVQELVEEGMITIHYVNTQDQLADLGTKH 216
            M ELG  K F  +P+Y DNT+TLH  GNR++S R KHI LR+FF++ELV EG I+IHYV T+D LAD+GTKH
Sbjct:  569 MTELGSGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKH 640
[Close]
BLAST of mRNA_A-nodosum_M_contig1178.16.1 vs. uniprot
Match: A0A6H5KBU1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU1_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 2.280e-22
Identity = 44/73 (60.27%), Postives = 59/73 (80.82%), Query Frame = 1 
Query:    1 MVELGFEKGFNSVPLYLDNTSTLHVAGNRTYSPRAKHITLRYFFVQELVEEGMITIHYVNTQDQLADLGTKHL 219
            M ELGF   F S PLY+ NT+TLHV GN+T+S R KH+ LR+F+++E+V+EG I+IHY+ T+D LAD+GTKHL
Sbjct:  602 MKELGFGSEFRSAPLYI-NTATLHVIGNQTFSGRTKHVALRFFYIREIVKEGRISIHYIPTEDNLADIGTKHL 673
[Close]
BLAST of mRNA_A-nodosum_M_contig1178.16.1 vs. uniprot
Match: A0A6H5K129_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K129_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 3.120e-22
Identity = 42/73 (57.53%), Postives = 55/73 (75.34%), Query Frame = 1 
Query:    1 MVELGFEKGFNSVPLYLDNTSTLHVAGNRTYSPRAKHITLRYFFVQELVEEGMITIHYVNTQDQLADLGTKHL 219
            + ELG  K F  VPLY DNT+TLH  GNR++S R KHI LR+F+++EL+ EG I+IHY+ T   +AD+GTKHL
Sbjct: 1078 LTELGLGKEFAQVPLYCDNTATLHALGNRSFSSRTKHIALRFFYIRELISEGRISIHYIPTDSNIADIGTKHL 1150
[Close]
BLAST of mRNA_A-nodosum_M_contig1178.16.1 vs. uniprot
Match: A0A6H5J9N2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9N2_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 9.710e-22
Identity = 44/73 (60.27%), Postives = 54/73 (73.97%), Query Frame = 1 
Query:    1 MVELGFEKGFNSVPLYLDNTSTLHVAGNRTYSPRAKHITLRYFFVQELVEEGMITIHYVNTQDQLADLGTKHL 219
            + ELGF K F  VPLY DNT+TLH  GNR++S R KHI LR+FF+++LV EG I IH+V T    AD+GTKHL
Sbjct:  266 LTELGFGKEFAQVPLYCDNTATLHSLGNRSHSSRTKHIALRFFFIRDLVSEGKIFIHFVPTDSNPADIGTKHL 338
[Close]
BLAST of mRNA_A-nodosum_M_contig1178.16.1 vs. uniprot
Match: A0A6H5JBV6_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBV6_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 1.480e-21
Identity = 44/73 (60.27%), Postives = 55/73 (75.34%), Query Frame = 1 
Query:    1 MVELGFEKGFNSVPLYLDNTSTLHVAGNRTYSPRAKHITLRYFFVQELVEEGMITIHYVNTQDQLADLGTKHL 219
            + ELGF K F  VPLY DNT+TLH  GNR++S R  HI LR+F+++ELV EG I+IHYV T   LAD+GTK+L
Sbjct: 1106 LTELGFGKEFAQVPLYCDNTATLHALGNRSFSSRENHIALRFFYIRELVLEGRISIHYVPTDSNLADIGTKYL 1178
[Close]
BLAST of mRNA_A-nodosum_M_contig1178.16.1 vs. uniprot
Match: A0A6H5KC00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC00_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 7.030e-21
Identity = 44/74 (59.46%), Postives = 55/74 (74.32%), Query Frame = 1 
Query:    1 MVELGFEKGFNSVPLYLDNTSTLHVAGNRT-YSPRAKHITLRYFFVQELVEEGMITIHYVNTQDQLADLGTKHL 219
            + ELGF K F  VPLY DNT+TLH  GNR+ +S R KHI LR+F+++ELV EG I+IHY+ T    AD+GTKHL
Sbjct:  889 LTELGFGKEFAQVPLYCDNTATLHALGNRSSFSSRTKHIALRFFYIRELVSEGRISIHYIPTDSNPADIGTKHL 962
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1178.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KNH5_9PHAE2.920e-2463.89Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KMK0_9PHAE4.690e-2461.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJH6_9PHAE5.490e-2463.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5U2_9PHAE1.470e-2362.50Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JME8_9PHAE6.450e-2362.50Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KBU1_9PHAE2.280e-2260.27CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K129_9PHAE3.120e-2257.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J9N2_9PHAE9.710e-2260.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBV6_9PHAE1.480e-2160.27Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5KC00_9PHAE7.030e-2159.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1178contigA-nodosum_M_contig1178:231010..231228 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog36033.XP_001642561.1
PFAMsRVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Model size219
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.97e-11
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3NUZ7@4751|Fungi,3QNZW@4890|Ascomycota,3RTT4@4891|Saccharomycetes,3S0WE@4893|Saccharomycetaceae
DescriptionTkp5 protein
Cds size219
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866593.601461-CDS-A-nodosum_M_contig1178:231009..2312281680866593.601461-CDS-A-nodosum_M_contig1178:231009..231228Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1178 231010..231228 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1178.16.1prot_A-nodosum_M_contig1178.16.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1178 231010..231228 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1178.16.1

>prot_A-nodosum_M_contig1178.16.1 ID=prot_A-nodosum_M_contig1178.16.1|Name=mRNA_A-nodosum_M_contig1178.16.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=73bp
MVELGFEKGFNSVPLYLDNTSTLHVAGNRTYSPRAKHITLRYFFVQELVE
EGMITIHYVNTQDQLADLGTKHL
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mRNA from alignment at A-nodosum_M_contig1178:231010..231228+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1178.16.1 ID=mRNA_A-nodosum_M_contig1178.16.1|Name=mRNA_A-nodosum_M_contig1178.16.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=219bp|location=Sequence derived from alignment at A-nodosum_M_contig1178:231010..231228+ (Ascophyllum nodosum dioecious)
ATGGTCGAGCTAGGCTTCGAGAAAGGATTCAACAGCGTGCCGTTGTACCT
TGACAACACTTCAACATTGCACGTCGCCGGAAATCGTACGTACTCCCCTC
GGGCGAAACATATTACTCTGAGGTACTTCTTCGTTCAAGAACTAGTGGAG
GAGGGCATGATCACCATCCACTACGTGAACACCCAAGATCAACTTGCAGA
CCTGGGCACCAAACATCTA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1178:231010..231228+

>mRNA_A-nodosum_M_contig1178.16.1 ID=mRNA_A-nodosum_M_contig1178.16.1|Name=mRNA_A-nodosum_M_contig1178.16.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=219bp|location=Sequence derived from alignment at A-nodosum_M_contig1178:231010..231228+ (Ascophyllum nodosum dioecious)
ATGGTCGAGCTAGGCTTCGAGAAAGGATTCAACAGCGTGCCGTTGTACCT
TGACAACACTTCAACATTGCACGTCGCCGGAAATCGTACGTACTCCCCTC
GGGCGAAACATATTACTCTGAGGTACTTCTTCGTTCAAGAACTAGTGGAG
GAGGGCATGATCACCATCCACTACGTGAACACCCAAGATCAACTTGCAGA
CCTGGGCACCAAACATCTA
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