mRNA_A-nodosum_M_contig1177.7.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1177.7.1
Unique NamemRNA_A-nodosum_M_contig1177.7.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1177.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1177contigA-nodosum_M_contig1177:88042..95685 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size3017
Hectar predicted targeting categoryother localisation
Exons10
Cds size450
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1177.7.1prot_A-nodosum_M_contig1177.7.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1177 89873..93063 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866590.3606727-UTR-A-nodosum_M_contig1177:88041..884371680866590.3606727-UTR-A-nodosum_M_contig1177:88041..88437Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1177 88042..88437 -
1680866590.3767898-UTR-A-nodosum_M_contig1177:88452..885511680866590.3767898-UTR-A-nodosum_M_contig1177:88452..88551Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1177 88453..88551 -
1680866590.3852248-UTR-A-nodosum_M_contig1177:88580..898721680866590.3852248-UTR-A-nodosum_M_contig1177:88580..89872Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1177 88581..89872 -
1680866590.5633144-UTR-A-nodosum_M_contig1177:93063..931141680866590.5633144-UTR-A-nodosum_M_contig1177:93063..93114Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1177 93064..93114 -
1680866590.5714297-UTR-A-nodosum_M_contig1177:93460..935721680866590.5714297-UTR-A-nodosum_M_contig1177:93460..93572Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1177 93461..93572 -
1680866590.5810204-UTR-A-nodosum_M_contig1177:95068..956851680866590.5810204-UTR-A-nodosum_M_contig1177:95068..95685Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1177 95069..95685 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866590.5033116-CDS-A-nodosum_M_contig1177:89872..898881680866590.5033116-CDS-A-nodosum_M_contig1177:89872..89888Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1177 89873..89888 -
1680866590.514527-CDS-A-nodosum_M_contig1177:90374..904751680866590.514527-CDS-A-nodosum_M_contig1177:90374..90475Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1177 90375..90475 -
1680866590.5249386-CDS-A-nodosum_M_contig1177:91154..912141680866590.5249386-CDS-A-nodosum_M_contig1177:91154..91214Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1177 91155..91214 -
1680866590.5358198-CDS-A-nodosum_M_contig1177:91971..920701680866590.5358198-CDS-A-nodosum_M_contig1177:91971..92070Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1177 91972..92070 -
1680866590.546744-CDS-A-nodosum_M_contig1177:92453..926001680866590.546744-CDS-A-nodosum_M_contig1177:92453..92600Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1177 92454..92600 -
1680866590.554987-CDS-A-nodosum_M_contig1177:93036..930631680866590.554987-CDS-A-nodosum_M_contig1177:93036..93063Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1177 93037..93063 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1177.7.1

>prot_A-nodosum_M_contig1177.7.1 ID=prot_A-nodosum_M_contig1177.7.1|Name=mRNA_A-nodosum_M_contig1177.7.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=150bp
MVMRLQLREIKNAAKATQAALLDHQRELLRQRAESTQRQRKAAAAAKKAE
KQREIAAQAKELKDKVKEIREVKEHLLQEARVRRRRSVEFKNAAWSRERG
FKKQQREARHQEELMTWNRQRVDQVALEDAAAEEKRVRRLSAQARRRAL*
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mRNA from alignment at A-nodosum_M_contig1177:88042..95685-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1177.7.1 ID=mRNA_A-nodosum_M_contig1177.7.1|Name=mRNA_A-nodosum_M_contig1177.7.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=7644bp|location=Sequence derived from alignment at A-nodosum_M_contig1177:88042..95685- (Ascophyllum nodosum dioecious)
AATAAGCCCCGTAAGAGACAACTAACGCGTGCAAATTGTTGTAGACCGCA
TAATGGACGACTGACGTCCTCAGCGTCACATAAGCAGTAACGATCCTAAA
TCCTGGTTAAAGTTTACGTACTAAAATAACCCGGTAGCGTTGCCGCACAT
AGGTAAGAGGTGTGGGAGATTCCTTTCTGCGAAATATTTTTTCCAATTTT
TTGTGAGAATCACTCCCTCGCTCCCTCTAGATGCTCGCTGTGCTCGTGAG
TAAGTAGGAGCTGCCTCCGCAGTTCTCAGCGTGTGGGCAAATGTTATGAT
GATTGATCTATAATCCCTCCGCATCAGGAGGCGACCTAGGAGTAAAAATA
GGCGTTATTATGATATGACAGCGCCGTATTTTGGGAAAGCACAAACCCTC
GGCTGCAGTCTGTTCTTCACCGAGATTGTTAGCAAGTAACGTAACGAAGA
AAGGGATTTCAAGAGAACATCGAACAACAACAACATCAGCATCGGCATCA
CCCACCAGCCTAGACCCCGGAACCCTTCTGCGAGTACAACGTGGTATATC
CTCATAATAAGCTGCTGTCGCGCTGCAGATTTCCAGACAAGCGCAGACCT
CACCGGCCTCTAAGCAGGTACCAGGTAGGTGGGTGTGACTTTTATTCTCA
TATTATGCCTGCTGGAGAGCCGAAGGGACGCTTTGTCCCTCCCTACAGGA
GACGATTTGTCCATTCTCTCTTCTTATCATAACCCAAGCGCCATCGTTTC
CCAACGATCTGCCGTTGTTTTCCACAAAGTTCGAAGAAATTCTGGGTACA
ATCTTGTTCAGAGTAGTCCTGTACCTATCTGTATTATAGTAACCAAGATA
TGTTACTTTACTTATCTGTAGTCTAGATAACAAAAATACTGAGCAACGGC
TCCTTTTTTTAGGGATGTTCGGACTTATCCAAGAGTTGGACAGCGCTGGT
ACTAGAAGGCTAGCTTCTCTCCGAATCCAATACGACATTGCTCTGAACCC
AGCTCTTGTGTAGAGCTGCCGCATTCGCACTATCCGTAACCCATCGCGCC
CATAAGTAACTCGCGGTGATCTGTTGTACTCTCTTTTATAGAGAATTAAT
TAAATAGTTGTGTGCAGAAAAGTCATGTGGATTTTGTACAGGTGGTCGTA
GTAAAGTTTCAGAGCATCACAGATTCGGCGTATTCCTTCATAAATCCCGC
CAAAAAACAAAACAGTTTTCACTTGAACGGAGATAAACGGCTCGATTGCA
TGCCTTGTTCTGACGAGGCCAGCACCCAATGCGTCCACCACTGCTCAGCA
CTAGTGATGTTTGTTCATGAATCTAGACTCCACATCTACTCACTCTGCCA
CACCTCAACCCAACCCGCACTCCGGGCTAGGACGTGCCTGCTGTGACTGG
TTCATATTGGGGACTGCAGTAGTGTATCAAAGCTCCACAATATATATGCT
GTTGACCGGATTGTCGCTTCCACAAAATAATACAGTAGTATGAATAGCCG
CCCACTCCAACAACCGATGGTACTTGTAGTATCAATAGTATCAGATACCG
GTGTAGTCTACAGTAGTATCTCTCACTTTATTTTTTTGTACCTCACTTGA
GGCCGATGGGCCTCAACGTGCTAGGTCACTAATCCCACCTACTGCAAATT
ATGCTATCCTGCCCTGCCTGTGGTCACGAAGGATCTTCTCTTACAACTCG
TCAACCAATGGCTGAATTGTACTTACTCCCGATCTCACTTTCCGCTACTA
CGGAGGACGGAATAAAAAACCCCTGCTGACTAGAATCGAACTCCCAACTT
CCGCACTATTGTCTATTAACTATTAATTAATACCGGTACATAATACAGTA
GTAGTAGTGGGTATGCGAGGCTACCACTATAATAGTAATAGTGGACCACT
TGGGCGACGAGTACAGACAGTATAGTGTAAAAAAATTACACATGTACCAG
GTACCAGCTACTACTGCTGCACCATACACATACAGTAGTAGCGTAAACAA
TGAAATAATATCCTCAGCATGTTTTCAGAAAAACGTACTATAATAGAGCT
ATACCTGGTAACTCACTTTTCCCGATGTGCCAACCCTCACCTGATCGCGA
TCGCCACCCCCAGAAAACCACCACAGGAGCGAGCGCTATCAACAGGGCAA
CTTACTCTCTGGAGATGGCCTCTCTTCAGGAAGCCGCAGCCGCGCGCGGA
CCTCTCGGTGGCGACGTTTCGTTAGGCGTATCTTGATGGCAAACGTCTTG
CGCCATCCTCCTTGTCCAATAGATGTGATAATACTAGTAGTAGTAATAGT
GTGTGCCTGTTTTAGTATAATAGTGACTAGCCTGTTCTGTTTGGAACAAA
AGTTACTGTTTGTACTATTAATGTTGATATTAATATTGATATATCTCCGC
GCGCCTAGGACGAGTACACTAATAAAACTTGAGGGCGGCACCGCTGACTA
TTATGACTATTATTGTATACCTGGTAATAGTTTAACGCTCATTCCTTATC
CAAACACAAGCAACCCAAGCTCATTCCTCACCCCACGGTGGTATATCATT
CGACGCTGCTGTTGCTAGCAGGCGGCTATTTCAGCCAAAAGGGAGGCGGA
GGAAAAAAAGAAAGCTGACGCGATGGTAATGAGGCTGCAGCTCCGAGAGG
TACGGGATGGCAAAGGTCGCGACCCTCTCGAAAAGCTGTGATATAAATAA
TGCTTGTGTGCTCACGGACAGAGCTCGATTCGAGGCGGTAGTAAAAGACA
GACATAGAGCTATCAGGATAGAAGCTGGAAGGTGCCTCTTGGAATTCCTT
TGTCCCCGTCGTTTTGATGTGTGCGTGTGTATCGGTATGTACTGTAGCGT
CAGCGTTGTTTGCTTTGATGTTATATTAATACCAGTACTATAATAGAGAC
AGTATTATAAATATTAACTAATAGGCAACGGTTATACTTTAAATGTTTTG
TGATTAAAAAAAAAAGTATTACTACAGTAGTATCAGATACTGTAGTGAAT
ACGATTTCTTTCGCGACCTATTTTGTTTCTAATTACCTTGTATTTTGTTT
ATAATTACCTTGCACCTGGTATGTATTACTAACAGATTAAAAATGCCGCT
AAAGCGACGCAAGCGGCCCTTCTCGACCACCAGCGGGAACTGCTCCGGCA
ACGCGCCGAATCCACCCAAAGGCAACGGAAAGCTGCCGCCGCTGCCAAGA
AAGCCGAGAAACAGAGGGAAATCGCGGCTCAGGCGAGAAACAAATAAATT
GTGTTGCTTGTTCTCTCTCGGTATTTTACCACCGTGCTGAATTACTACAA
ATAGTATAGTAGTAGGTACACTTAGAACCGCCTTTTCCTCTTTAAAAAAC
CCGTCCCGTCTCTCGCTGTCAGTTTTCAGTAGAGCTGGGCTCTCCAGAAG
TCTCGCGTTTTCTTGTGGAAAGGATGCGCGTCATGCACGTATCGCAGACA
GCGTCGATCGATCGCTTAGGTTGAGGAAGATAATCCGCGCTGCAGTACTC
GCACTTTTTTTCCTTTTCTTTCTTTTAAGACAGCAGGTCAGGTATAATAA
ATAGTAACTGCTGCAGGCAGCGCCTCATGCGCAGCATTTTTTCATCTATT
GCGGTTTTACCACAGGCGAAGGAGCTCAAGGACAAGGTGAAGGAAATTCG
GGAGGTTAAGGAACACCTCCTACAAGAAGCCCGAGTGAGGAGGCGACGCA
GCGTTGAGTTCAAGGCAAGCAAGAGGCTTCGCTTACCCTCACCCCACCTA
TTATTATTATTATTATTATTATTATTATTATTATTATTATTGTTATTATC
ATCATCATCATTATCATTATTATTATTATTATCATCATTATCATTATTAT
TATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTA
TTATTATCATTATTATCATTATTATCATCATTATTATTATTATTATTATT
ATTTTTTATTATCATTATTTTCATTATTATTATTATCATTAGTCTATTAT
TATTATTATTATTATTATTTGCACTGTTCTTTTTTTTGCTGTCGTAAAAA
GAAAGATAAAACAGGAGAGCACTTATTTGAGCTCAAATCTCCACTGTACT
TGGACGTACTTCGAAACCCAACCTGTGTTCGTGCTTTGTTTTACAGTATG
TACGTATGTATGTATGGTCATCACATGTAGCAGAGTATGGATCAACCGGG
TAAAGTTGCCAATCCTGCTCGTGGTCAGCTGAACAGGGAAAATTCATATT
TCTCTGTCCCCGTTCGCGCCTGAGAATTTAGTCTCGCGAGATGGGTTCGA
CAGTCCCGTCCCGCGTCAGCCTGCTCATTTTCCACACCCATGCTAAAAAA
TGTAACAGTAACACTATTGATAGTATGCCTGTATTGTATCCTTGTAGAGC
TATGTGTGTTGCTCTAACCTACTGTACCTACTACTGTATTTTCTTCGCTA
CTAATATTAATAATAAAAAAGAACGCCGCATGGTCTCGGGAGAGGGGGTT
CAAGAAGCAGCAGCGAGAAGCACGCCACCAGGTACTACTATTAGAATGGA
CGAACAGTGTTAATAGAGCTACAGTACAGGGCAATACCTGGTACAGTAGT
GTGTATACAGTACATTAGACTAAGACTATTGGTAGAGGCGAAGATGGCTT
GGTTGTGATTACTCTTCCTACAGTTGTACGTACGAGTGCTTCGTACTTGA
AATACAGTACTGACTGTACCAGGTACGGTATACAGTATTACTATTACTGA
ACATAGTAATTTGTACCGGTATTGTAGTACTGTACCAAGGTGTATGGTGA
CCTGGTAGTAATCTTAAAATAACATTAATTTTTACTTTTTTCTTCAATAT
TTTTTGTTTCATCGTCTATGCAAATACGCTGCCGCGTTTTTTTTCTCTTC
CACTTGCAAAAATGTACCTGGTACAGTACAGGGTAGTCTCTTCGTGTCCG
AGGTCTCGAGAACTGCATACAATAGTCGTTTTGTCTGCCCAGGCGTGCTG
TTACTGCACTAAACTGTACCAGGTGCATTCCATTGTGCCGTTACCATCGC
CGCTCGTGGTATTAATATTGATATTAGTGTATTATAGTGTACTTTATCGG
TATTAATATTAGGCAGTTCGCGCGTCAGATCTTCGCCTCGAGGCTTACTA
TTTCCTGGTATGTATATTAATACTGTAGCTTGGCTTTGCTTTGTCGTTGC
ACGACCACAGGAGGAGCTCATGACCTGGAACCGGCAAAGGGTGGACCAGG
TGGCTCTAGAGGATGCGGCTGCTGAGGAAAAGCGCGTCCGCCGATTGTCG
GCGCAAGCGAGGTAGGTACATTATTCTCCAGTAAACTACTGGTAGAGCAG
TAGTCTACTGTAGTACGCTGCCGTTGAGAGTTGGACAGGTAGGCCGGCCG
GCGTATTCTTCCCCTCTACGCCCTCGTCCGTCCCTCTCGGCCTGCCTTAT
CCCTCCAAAGCCAAGTTTTCGGGATTTTCTTCATCTCTTTACTTTTTCCT
TTTTGGGGCTGGTTTATTTTTGATTGTTGGCACTGCTGCTCTGCCTGTTG
TAATCATTATACGAGTACACTATTGATAGTTTTAGAGCATAGTCTACCAG
ATGATGCCACTGACGACGTGACAGTGCTACTAATATTAATATTATTGATT
GTACCGTATAGTTGTGTAAATCGCTCGAACCCGAAACGTTTATCGTGCTT
CCCGTCTCTCTGGTGTCTCTTGGAAAACATTGCCGGTGCACGGTCATTAA
TGTGCCAAAACACACGTCGTCTCCATATATGTACCGATGATATTAAGACG
GCGAGCCCTCTGAGAGGTGCGGAGCAAGTCTGTCAGCTCGCCAGAGGACC
TCGAGATGGACCCCCCCGTGCGCGTCCTCGTTCCCTTCACGTCAACCGAA
GACGAAGCTCGTTAACCTCTCGAGGTGCCGTATGCTGTCGTTTGACGGCA
TCGACGAGAAGGAGTTTGTGTGGTGGCACGGTGCGAAGGATTTCGTTGGT
TTACTTCGCGAATAGCTGTGGCCCTTGCTGCGCTGGCGATGGTCTCGTAG
ATGGGGCGACCACGATCGTGAAGAAGATAGCCACGTGCGCGATCGCGGCG
GCTACTCTTTCGATCCCTTTGGATAGCATTTAACATGTCAGGTTAAGCAA
ATATACTTGGTATTTTCACATGTCAGGTTAGCTCTAAGCATATACTTGGG
TATACCAGTGCCTGGTGCCTGGTTCAGCAGCCTTGGCTGTGATAAAGTTT
GGTTGTCATGGTCGCGATGCGTTCGCCGTGTGCTACATGTAACCTGAGGG
CAGAAGCAAGAAATGATCCCGCGCGGGCAGAAAATAAAGGAAATGGTGAA
CAGCATCATTACAACTCGTACGTATTTATTTCGATAAGCACGATTTAATT
GTTGGACTACCGGCTCCAGGATTGTCATGATGAGGAGTATCGTAGAAGCA
GGCGTGTTCATGTTTTGTCACACTCTCGGGGATGGATGAAGAAGTCCTCC
TCGGCAACATTGCCTTGCGCCGTTGTCTATCAAGAGTAAATTATGATGCT
GTTGTGGATCTCAGGATTTTTCATGTTTTGTGGGAGATTTTTCTCTAGTT
CGTATTAGAGCTCACGGTGTCGTTGCTGCCTGTTCTGTCGCGGACGATAG
GTATGGGATATTTATTGCAACTCGTACGTGTTTCTCTCGAAAGTACCATT
TTATTGTTGGGTTATTTTCACATGTCAGGTTAAGCATATGCTTGGGTATA
CCAGTGGCTGGTGCTTGGTTCAGCAGCCTTGGCTGTGATTATGTTTGGTT
GTCTTGGTCGCGATGCGTTCGCCGTTTGCTACATGTAACTCGAGGGCAGA
AGTAAGAAATGATCGCGCGCAGACAGGAAGTAAAGGAAATAGTAAAATCA
TTATTACAACTCGTAAGTGTTTCTCTCGATACATACCATTTTATTGTTGG
ACTACCGGCACCGGGCTGCTTGTCGTAAGGAGGAGTACCGTAGAAGCAGG
CGTGTTCGTGTGTTGTCACACTCCCGGGGATGGATGGAGAAGTCCCCCTC
GGTAACACTGCCGTACGCCGTTGTCTATTAAGAGTATATTATGATGCTGT
TGTGGGTCTCAGGAATTTTCATGTTTTGTGGGAGATTTTTCTCTAGTTCG
TATTAGAGCTCACGGTGTCGTTGCTGCCTATTTTGTCGCGGACGATAGGT
AGAGGATATCTGTAGCCGCCCCCGGGTTGTGTTGTTACCGCCACCGTCAC
CTACGGTATAGACAGGATTTGTTGTACTTTTGCTGTAGTTGGGCTGGTCG
AGTGTCGCCGACGGGGTGGGTAGGTGAAGGAGGCAGCCCCAACAGAAACA
TACTTAACTTAACAAATGTATTATGGATACCTACACGATGCTAGCGAAAC
CATCGTCAGATTTTGGGGTGCGTTGAGTTATGTATCGCTAACTTAGTCGA
CTTTTCCATGAACCAGGGGGACCGGGTAGCCGTGATCGATGGGTGCGTCC
CTGCCGATCGATGGTCTGATGGGGGCTTGAGCGTATTATTATTAGTAAGC
GTTTGGAGAGGAGGGCGGGGCGTGTACTTGCAAGGTATTTTTTAATGGAA
TTTCTGCCTTTCTGGGTCTATGCGGCTCGCATGTTGTCAACGGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1177:88042..95685-

>mRNA_A-nodosum_M_contig1177.7.1 ID=mRNA_A-nodosum_M_contig1177.7.1|Name=mRNA_A-nodosum_M_contig1177.7.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=450bp|location=Sequence derived from alignment at A-nodosum_M_contig1177:88042..95685- (Ascophyllum nodosum dioecious)
ATGGTAATGAGGCTGCAGCTCCGAGAGATTAAAAATGCCGCTAAAGCGAC
GCAAGCGGCCCTTCTCGACCACCAGCGGGAACTGCTCCGGCAACGCGCCG
AATCCACCCAAAGGCAACGGAAAGCTGCCGCCGCTGCCAAGAAAGCCGAG
AAACAGAGGGAAATCGCGGCTCAGGCGAAGGAGCTCAAGGACAAGGTGAA
GGAAATTCGGGAGGTTAAGGAACACCTCCTACAAGAAGCCCGAGTGAGGA
GGCGACGCAGCGTTGAGTTCAAGAACGCCGCATGGTCTCGGGAGAGGGGG
TTCAAGAAGCAGCAGCGAGAAGCACGCCACCAGGAGGAGCTCATGACCTG
GAACCGGCAAAGGGTGGACCAGGTGGCTCTAGAGGATGCGGCTGCTGAGG
AAAAGCGCGTCCGCCGATTGTCGGCGCAAGCGAGACGGCGAGCCCTCTGA
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