mRNA_A-nodosum_M_contig1177.4.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1177.4.1
Unique NamemRNA_A-nodosum_M_contig1177.4.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1177.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1177contigA-nodosum_M_contig1177:26914..27138 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog109871.XP_006682628.1
Preferred nameSQS1
PFAMsG-patch,R3H
Model size226
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.65e-05
EggNOG OGsKOG0154@1|root,KOG0154@2759|Eukaryota,39X4K@33154|Opisthokonta,3P0F2@4751|Fungi
DescriptionR3H and G-patch domain protein
Cds size225
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866590.2142286-CDS-A-nodosum_M_contig1177:26913..271381680866590.2142286-CDS-A-nodosum_M_contig1177:26913..27138Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1177 26914..27138 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1177.4.1prot_A-nodosum_M_contig1177.4.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1177 26914..27138 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1177.4.1

>prot_A-nodosum_M_contig1177.4.1 ID=prot_A-nodosum_M_contig1177.4.1|Name=mRNA_A-nodosum_M_contig1177.4.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=75bp
MWTLDELKQCRELIYPHVPEDDVEFAYEKVGGVARQAFDKKWLAVHMFWL
KQRTKEVRLEDLQMAVDGCNSPSIL
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mRNA from alignment at A-nodosum_M_contig1177:26914..27138-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1177.4.1 ID=mRNA_A-nodosum_M_contig1177.4.1|Name=mRNA_A-nodosum_M_contig1177.4.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=225bp|location=Sequence derived from alignment at A-nodosum_M_contig1177:26914..27138- (Ascophyllum nodosum dioecious)
ATGTGGACGCTCGATGAGCTGAAGCAATGCAGAGAGCTCATTTACCCGCA
TGTTCCTGAAGACGATGTTGAGTTCGCCTACGAAAAAGTGGGAGGAGTGG
CGCGACAAGCCTTCGACAAAAAATGGTTGGCTGTACACATGTTTTGGTTG
AAGCAAAGAACGAAAGAAGTTCGTCTGGAGGACTTGCAAATGGCCGTCGA
CGGTTGTAACTCACCATCAATCCTG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1177:26914..27138-

>mRNA_A-nodosum_M_contig1177.4.1 ID=mRNA_A-nodosum_M_contig1177.4.1|Name=mRNA_A-nodosum_M_contig1177.4.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=225bp|location=Sequence derived from alignment at A-nodosum_M_contig1177:26914..27138- (Ascophyllum nodosum dioecious)
ATGTGGACGCTCGATGAGCTGAAGCAATGCAGAGAGCTCATTTACCCGCA
TGTTCCTGAAGACGATGTTGAGTTCGCCTACGAAAAAGTGGGAGGAGTGG
CGCGACAAGCCTTCGACAAAAAATGGTTGGCTGTACACATGTTTTGGTTG
AAGCAAAGAACGAAAGAAGTTCGTCTGGAGGACTTGCAAATGGCCGTCGA
CGGTTGTAACTCACCATCAATCCTG
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