mRNA_A-nodosum_M_contig1175.7.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1175.7.1
Unique NamemRNA_A-nodosum_M_contig1175.7.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig1175.7.1 vs. uniprot
Match: A0A6H5JKZ2_9PHAE (DLH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JKZ2_9PHAE)

HSP 1 Score: 359 bits (922), Expect = 4.470e-121
Identity = 195/300 (65.00%), Postives = 226/300 (75.33%), Query Frame = 1
Query:    1 KVIREAWAAEVSPSDAGQGGG-------WTIRRQIVEYRDGETTLEGLYARPEGDGLSERIPGVIVAHTAVGSRSYFILWKLDSIARLGYAAFALDMFGAGRALWDRAESLAARRPITEDRSLLQTRALAAVQTLGRLEGVDSDRVAAVGYCFGGMVVLDLARM-----------TPAVPGLKAVASLHGILAPMLPGAGKNP----AAENAAVG-PKVLVLHASDDPFVRPEQVQAMEEEFARRQANLEIVRYGGTARHAFTRPEKTEEADVAAGLSYDSHADADSWRRVVELLREGLA 831
            KVIR AWA   +  D   G G       W+IRR +VEY DG+T L+GLY RPEG+GL +R+PGVI+AHTAVG +   ILWKLD IA LGYAAFALDMFG GRALW+RAESLAARRPITEDRSL+Q RA AAV+TL ++EG+D +R+AAVGYCFGGM VLDLARM           TP  P LKAVASLHGILAP+ PG G       AA++AA+  P+VLVLHA+ DPFV PEQV+AMEEE +RR A LE+VRYGG+A HAFTRPEKT + D  AGLSY  +A+ DSWRRVVELLRE  A
Sbjct:   71 KVIRAAWAVATTNPDTTNGRGASSSSASWSIRRSVVEYNDGDTALQGLYTRPEGEGLPDRLPGVILAHTAVGPQEDMILWKLDQIALLGYAAFALDMFGTGRALWNRAESLAARRPITEDRSLMQARATAAVRTLSQMEGIDEERLAAVGYCFGGMTVLDLARMVRPDGDDAGANTP--PRLKAVASLHGILAPISPGTGGEDGAGLAADDAALAVPRVLVLHATADPFVPPEQVRAMEEELSRRGARLEVVRYGGSAMHAFTRPEKTSQVDRDAGLSYCKYAEEDSWRRVVELLREEFA 368          
BLAST of mRNA_A-nodosum_M_contig1175.7.1 vs. uniprot
Match: A0A836CLU0_9STRA (Dienelactone hydrolase family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLU0_9STRA)

HSP 1 Score: 197 bits (500), Expect = 2.440e-58
Identity = 122/255 (47.84%), Postives = 156/255 (61.18%), Query Frame = 1
Query:   70 IRRQIVEYRDGE-TTLEGLYARPEGDGLSERIPGVIVAHTAVGSRSYFILWKLDSIARLGYAAFALDMFGAGRALWDRAESLAARRPITEDRSLLQTRALAAVQTLGRLEGVDSDRVAAVGYCFGGMVVLDLARMTPAVPGLKAVASLHGILAPMLPGAGKNPAAENAAVGPKVLVLHASDDPFVRPEQVQAMEEEFARRQAN-LEIVRYGGTARHAFTRPEKTEEADVAAGLSYDSHADADSWRRVVELLREGL 828
            ++RQIV Y D     L+G   RP     +E +P V+VAHTAVG +   +L  LD +A LGY AF LDMFGAG+A+WDR +SLAAR P+T DRSLL  RA AA+    +L GVD+ RVA VGYCFGG+V LD  R   A  G+ A  + HGILAP  P    +   ++ + G +VLVLH   DPFV P+QV+A E E A        ++ Y G ARHAFTRPEK  ++D +AGL YD+ A    W  +   L +  
Sbjct:   39 LQRQIVPYIDHTGLPLQGFVVRPAAQA-AESLPCVLVAHTAVGIQDDLLLQILDGVAGLGYVAFGLDMFGAGQAVWDREQSLAARAPLTSDRSLLARRAEAALHCATQLRGVDARRVAVVGYCFGGIVALDTVR---AGCGIAAAITFHGILAPPPPDQDLS-WCKHYSTGCRVLVLHGGADPFVPPDQVRAFEAEMAAAGVQQCSVIVYDG-ARHAFTRPEKVLDSDRSAGLFYDAAAAEAGWAAMRGCLEQAF 287          
BLAST of mRNA_A-nodosum_M_contig1175.7.1 vs. uniprot
Match: A0A7S0HUL7_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0HUL7_9CRYP)

HSP 1 Score: 185 bits (469), Expect = 8.960e-54
Identity = 111/254 (43.70%), Postives = 149/254 (58.66%), Query Frame = 1
Query:   70 IRRQIVEYRDGETTLEGLYARPEGDGLSERIPGVIVAHTAVGSRSYFILWKLDSIARLGYAAFALDMFGAGRALWDRAESLAARRPITEDRSLLQTRALAAVQTLGRLEGVDSDRVAAVGYCFGGMVVLDLARMTPAVPGLKAVASLHGILA-PMLPGAGKNPAAENAAVGPKVLVLHASDDPFVRPEQVQAMEEEFARRQANLEIVRYGGTARHAFTRPEKTEEADVAAGLSYDSHADADSWRRVVELLREGL 828
            +++  V Y +G   L G    P  D  ++++P V++ HTAVG +  F+ WKL+++A LG+ AF  DMFG GRALWDR E+L ARR +  DR  +  R  AA  T+  L  VD     A+G+CFGGM VLDLAR +  +P L+A  S HGIL  P LP    +       V  ++LV H  DDPFV  E +    E    R++N  +  Y G A+HAFTRPEKTE +D +AGL Y+  AD DS  R+  +LR  L
Sbjct:   36 LKKSSVSYSEGGRELMGEACWP--DVGNQKMPAVLLVHTAVGLQEDFMRWKLEAVASLGFVAFGADMFGTGRALWDREEALEARRELVCDRRRMIDRVKAAATTMMSLPQVDPRGFGALGFCFGGMAVLDLAR-SGCMPNLEATVSFHGILDDPDLPD---DYGGREGPVPGEILVCHGEDDPFVSSENLNLFLENLKLRKSNFHLQAYPG-AKHAFTRPEKTEPSDFSAGLFYNEQADRDSSERMKGMLRRRL 282          
BLAST of mRNA_A-nodosum_M_contig1175.7.1 vs. uniprot
Match: A0A0G4EJ35_VITBC (DLH domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EJ35_VITBC)

HSP 1 Score: 181 bits (458), Expect = 5.900e-52
Identity = 114/260 (43.85%), Postives = 149/260 (57.31%), Query Frame = 1
Query:   61 GWTIRRQIVEYRDGETTLEGLYARPEGDGLSERI----PGVIVAHTAVGSRSYFILWKLDSIARLGYAAFALDMFGAGRALWDRAESLAARRPITEDRSLLQTRALAAVQTLGRLEGVDSDRVAAVGYCFGGMVVLDLARMTPAVPGLKAVASLHGILAPMLPGAGKNPAAENAAVGPK--VLVLHASDDPFVRPEQVQAMEEEFARRQANLEIVRYGGTARHAFTRPEKTEEADVAAGLSYDSHADADSWRRVVELLRE 822
            GWT ++  V Y+D  T L GL    E D  S +I    P V+V  TAVG R  F+   LD  A LGY AF +DM+G G A+WD+  S A R+P+T DR+ LQ R +AA Q    L  V  D +A VGYCFGGM  LDLAR    VP +K V S HG+L          PA +    G    VLV H SDDPF+ P+Q QA ++E + ++ + +I  YGG A+H+FTRPEK  +AD  AGL Y   ++  S+R     L++
Sbjct:   41 GWTYKQTDVAYQDEGTELMGLAVWVERDDASRQILGERPCVLVCPTAVGLREDFLFGALDRYASLGYVAFGVDMYGEG-AVWDKGRSRAIRQPLTADRTKLQRRMVAAYQAAQSLPQVQEDNIAVVGYCFGGMCALDLARA--GVP-MKGVVSFHGVL--------DRPAVDKVPGGLSCPVLVHHGSDDPFISPDQFQAFQQELSDQRTDWQIHIYGG-AKHSFTRPEKVTQADRDAGLQYCPKSERRSYRTTKAFLQD 287          
BLAST of mRNA_A-nodosum_M_contig1175.7.1 vs. uniprot
Match: A0A7S1HA30_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1HA30_HEMAN)

HSP 1 Score: 175 bits (444), Expect = 4.750e-51
Identity = 107/204 (52.45%), Postives = 128/204 (62.75%), Query Frame = 1
Query:  208 FILWKLDSIARLGYAAFALDMFGAGRALWDRAESLAARRPITEDRSLLQTRALAAVQTLGRLEGVDSDRVAAVGYCFGGMVVLDLARMTPAVPGLKAVASLHGILAPMLPGAGKNPAAENAAVGPKVLVLHASDDPFVRPEQVQAMEEEFARRQA-NLEIVRYGGTARHAFTRPEKTEEADVAAGLSYDSHADADSWRRVVELL 816
            F+ WKLD +A  GY AF +DMFGAGRALWD+ E+LAAR+P+ EDRS +  R + A +T   +E  DS RV A+GYCFGGM VLDLAR +     LKA  SLHGIL  +       P  +   VG KVLV H   DPFV PE ++  E + A R A +L I  Y G+ +HAFTRPEKT E D AAGL Y   ADA SW     LL
Sbjct:    3 FMFWKLDKLASQGYLAFGVDMFGAGRALWDKEEALAARKPLREDRSQMIERMMCAYETACSMEVADSARVGAIGYCFGGMAVLDLAR-SGLPKSLKATVSLHGILDRL-----DTPPTD--VVG-KVLVCHGGSDPFVTPEMLRDFESDMAARNAEDLHIHTYSGS-KHAFTRPEKTTEGDSAAGLYYCELADAASWAAASALL 196          
BLAST of mRNA_A-nodosum_M_contig1175.7.1 vs. uniprot
Match: A0A7S1J2W1_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1J2W1_9EUGL)

HSP 1 Score: 169 bits (429), Expect = 8.560e-49
Identity = 104/210 (49.52%), Postives = 127/210 (60.48%), Query Frame = 1
Query:  226 DSIARLGYAAFALDMFGAGRALWDRAESLAARRPITEDRSLLQTRALAAV---------QTLGRLEGVDSDRVAAVGYCFGGMVVLDLARMTPAVPGLKAVASLHGILAPMLPGAGKNPAAENAAVGPKVLVLHASDDPFVRPEQVQAMEEEFARRQANLEIVRYGGTARHAFTRPEKTEEADVAAGLSYDSHADADSWRRVVELLREGL 828
            +++A LGY AFA+DM GAGRALWD AE+  AR P+ EDR LL++R  AA+         Q LG    +D DRVAAVGYCFGG+ VLDLAR     PGL+ V S HGIL       G  P  E  A+ P++LV +   DPFV P++ +    E  RR A LE V + G ARH FTRPEK + AD AAG  YD  ADA SW  +   L + L
Sbjct:    1 EALASLGYVAFAVDMLGAGRALWDGAEAKTARAPLYEDRRLLRSRMQAALTAASADSFAQALGPNVALDLDRVAAVGYCFGGLCVLDLARGN--APGLRGVVSFHGIL-----DGGGLPDPETDALRPRILVHNGDADPFVPPDKREQFLAEMGRRHAPLEFVSHPG-ARHGFTRPEKVQPADFAAGFGYDPQADAASWGSMKAFLADVL 202          
BLAST of mRNA_A-nodosum_M_contig1175.7.1 vs. uniprot
Match: A0A661FZ67_9GAMM (Carboxymethylenebutenolidase n=2 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A661FZ67_9GAMM)

HSP 1 Score: 159 bits (402), Expect = 2.610e-44
Identity = 103/251 (41.04%), Postives = 139/251 (55.38%), Query Frame = 1
Query:   70 IRRQIVEYRDGETTLEGLYARPEGDGLSERIPGVIVAHTAVGSRSYFILWKLDSIARLGYAAFALDMFGAGRALWDRAESLAARRPITEDRSLLQTRALAAVQTLGRLEGVDSDRVAAVGYCFGGMVVLDLARMTPAVPGLKAVASLHGILAPMLPGAGKNPAAENAAVGPKVLVLHASDDPFVRPEQVQAMEEEFARRQANLEIVRYGGTARHAFTRPEKTEEADVAAGLSYDSHADADSWRRVVELLRE 822
            I+ Q VEY+DG+  LEG +A    D  S+R PGV++AH   G RS F   K +S+A LGYA FALD++G G    +  E+ A  +P+ +DR  LQ R   A++ + + E VD  RVAA+G+CFGG+ VLDLAR    + G   VAS HG+  P    AG         +  KVLV+H  DDP  +P+QV  + +E     A+ +I  YG T  HAFT P      D   G  Y+  AD  SW+ +   L E
Sbjct:    3 IQTQTVEYKDGDVVLEGYFAWD--DTNSDRRPGVLIAHAWAG-RSEFEEGKAESLAELGYAGFALDLYGKGMRGSNAEENTALMQPLLDDRKTLQRRMTLALEQIRKQEIVDDSRVAAMGFCFGGLSVLDLARTGAELSG---VASFHGLFNPPGNTAGNK-------INAKVLVMHGWDDPMAKPDQVLTLADELTAMGADWQIHGYGNTM-HAFTNPAAN---DPGFGTVYNERADRRSWQSLQLFLAE 236          
BLAST of mRNA_A-nodosum_M_contig1175.7.1 vs. uniprot
Match: A0A6L8HPZ1_9BACT (Dienelactone hydrolase family protein n=3 Tax=Acidobacteriia bacterium TaxID=2081523 RepID=A0A6L8HPZ1_9BACT)

HSP 1 Score: 158 bits (400), Expect = 5.650e-44
Identity = 105/253 (41.50%), Postives = 136/253 (53.75%), Query Frame = 1
Query:   70 IRRQIVEYRDGETTLEGLYARPEGDGLSERIPGVIVAHTAVGSRSYFILWKLDSIARLGYAAFALDMFGAGRALWDRAESLAARRPITEDRSLLQTRALAAVQTLGRLEGVDSDRVAAVGYCFGGMVVLDLARMTPAVPGLKAVASLHGILAPMLPGAGKNPAAENAAVGPKVLVLHASDDPFVRPEQVQAMEEEFARRQANLEIVRYGGTARHAFTRPEKTEEADVAAGLSYDSHADADSWRRVVELLREGL 828
            I  +  EY DG T L G  A    D  ++  PGV++AHT  G    F   K   IA LGY A A+DM+G G       E+      + EDRSLLQ R  AA+  L    GVDS+R AA+GYCFGG+ VLDLAR   +    +A  S HG+L P  PG       E A V P+VLVLH  DDP  +P+ V+A+ EEF R  A+ ++  YG T  HAFT PE     ++  G  Y++ AD  SW  + + L +  
Sbjct:    3 ITTEAFEYSDGSTLLRGQLACD--DTWTDPRPGVLIAHTWAGCGP-FEQGKAADIAELGYVALAVDMYGGGIVGHSTEENAKLMSVVLEDRSLLQRRMTAALDALKAFPGVDSERTAAIGYCFGGLCVLDLARTGAS---FQAAVSFHGLLNP--PGN-----IEVADVSPRVLVLHGWDDPMAKPDSVEALAEEFTRAGADWQVHAYGRTM-HAFTNPEAN---NLDMGTVYNAQADRRSWNSMRQFLSDSF 238          
BLAST of mRNA_A-nodosum_M_contig1175.7.1 vs. uniprot
Match: A0A148N9A1_9GAMM (Carboxymethylenebutenolidase n=1 Tax=Methylothermaceae bacteria B42 TaxID=1798802 RepID=A0A148N9A1_9GAMM)

HSP 1 Score: 155 bits (392), Expect = 8.860e-43
Identity = 104/252 (41.27%), Postives = 139/252 (55.16%), Query Frame = 1
Query:   67 TIRRQIVEYRDGETTLEGLYARPEGDGLSERIPGVIVAHTAVGSRSYFILWKLDSIARLGYAAFALDMFGAGRALWDRAESLAARRPITEDRSLLQTRALAAVQTLGRLEGVDSDRVAAVGYCFGGMVVLDLARMTPAVPGLKAVASLHGILAPMLPGAGKNPAAENAAVGPKVLVLHASDDPFVRPEQVQAMEEEFARRQANLEIVRYGGTARHAFTRPEKTEEADVAAGLSYDSHADADSWRRVVELLRE 822
            TI+ Q VEY++GET L GL A    D  +  +PGV+V+HT  G R  F   K  ++A LGYA FALD++G G+      E+    +P  +DR+LLQ R  AA++ L     VD+ R+AA+G+CFGG+ VLDLAR+      L  V S HG+L P  PG       +   +  KVLVLH  DDP V  E V A+E+E     A+ ++  YG T  HAFT P+     D   G  Y+  AD  SW  +   L E
Sbjct:    2 TIQTQTVEYQEGETRLIGLLAWD--DAQTAPMPGVLVSHTWAG-RDDFACNKAKAVAELGYAGFALDLYGEGKVGSGPEENAKLMQPFLDDRALLQRRMSAALEALRAQRQVDNKRIAAMGFCFGGLCVLDLARIGA---DLNGVVSFHGLLNP--PGN-----TQGTKIKAKVLVLHGHDDPMVPVEDVVALEQELTEAGADWQVHVYGNTM-HAFTNPKAN---DPGFGTVYNPVADRRSWISLQNFLEE 236          
BLAST of mRNA_A-nodosum_M_contig1175.7.1 vs. uniprot
Match: A0A0W1AFP7_9GAMM (Dienelactone hydrolase family protein n=1 Tax=Legionella worsleiensis TaxID=45076 RepID=A0A0W1AFP7_9GAMM)

HSP 1 Score: 155 bits (391), Expect = 1.150e-42
Identity = 101/249 (40.56%), Postives = 137/249 (55.02%), Query Frame = 1
Query:   85 VEYRDGETTLEGLYARPEGDGLSERIPGVIVAHTAVGSRSYFILWKLDSIARLGYAAFALDMFGAGRALWDRAESLAARRPITEDRSLLQTRALAAVQTLGRLEGVDSDRVAAVGYCFGGMVVLDLARMTPAVPGLKAVASLHGILAPMLPGAGKNPAAENAAVGPKVLVLHASDDPFVRPEQVQAMEEEFARRQANLEIVRYGGTARHAFTRPEKTEEADVAAGLSYDSHADADSWRRVVELLREGLA 831
            ++Y+DG T   G  A      LS  +P V+V H  VG RS  +  K + +A +GY  FA+DM+G  R   D+    A   P+ +DR +L +R +AAVQ L +    D  ++AA+GYCFGG+ VLDLAR   A+   K V S HG+L P      K+   E   +  K+LVLH  DDP V PEQVQ   +E  +R+A+ +I  YG T +H+FT PE     D   GL Y+  AD  SW   +  LRE  A
Sbjct:    7 IKYKDGTTECRGFIAYDSS--LSHPLPAVMVVHDWVG-RSERMCTKAEELAAMGYVGFAVDMYGDARTGADKTARRALMAPLMQDRRILLSRIMAAVQFLNQFACADKAKIAAIGYCFGGLCVLDLARSLAAI---KGVVSFHGLLHPP-----KHVPQE--PIKSKILVLHGYDDPLVPPEQVQQFADEMNQRKADWQIHMYGHT-QHSFTNPEAH---DDEMGLHYNERADHRSWTTTLTFLRELFA 238          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1175.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JKZ2_9PHAE4.470e-12165.00DLH domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A836CLU0_9STRA2.440e-5847.84Dienelactone hydrolase family protein n=1 Tax=Trib... [more]
A0A7S0HUL7_9CRYP8.960e-5443.70Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
A0A0G4EJ35_VITBC5.900e-5243.85DLH domain-containing protein n=1 Tax=Vitrella bra... [more]
A0A7S1HA30_HEMAN4.750e-5152.45Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A7S1J2W1_9EUGL8.560e-4949.52Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A661FZ67_9GAMM2.610e-4441.04Carboxymethylenebutenolidase n=2 Tax=Gammaproteoba... [more]
A0A6L8HPZ1_9BACT5.650e-4441.50Dienelactone hydrolase family protein n=3 Tax=Acid... [more]
A0A148N9A1_9GAMM8.860e-4341.27Carboxymethylenebutenolidase n=1 Tax=Methylotherma... [more]
A0A0W1AFP7_9GAMM1.150e-4240.56Dienelactone hydrolase family protein n=1 Tax=Legi... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1175contigA-nodosum_M_contig1175:87241..89228 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LC04
PFAMsDLH
Model size834
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons4
Evalue1.8e-126
EggNOG OGsCOG0412@1|root,2SB8C@2759|Eukaryota
DescriptionDienelactone hydrolase family
Cds size834
COG categoryQ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866586.3793209-CDS-A-nodosum_M_contig1175:87240..874341680866586.3793209-CDS-A-nodosum_M_contig1175:87240..87434Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1175 87241..87434 +
1680866586.3918328-CDS-A-nodosum_M_contig1175:87701..877121680866586.3918328-CDS-A-nodosum_M_contig1175:87701..87712Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1175 87702..87712 +
1680866586.4022398-CDS-A-nodosum_M_contig1175:87967..883951680866586.4022398-CDS-A-nodosum_M_contig1175:87967..88395Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1175 87968..88395 +
1680866586.4103634-CDS-A-nodosum_M_contig1175:89027..892281680866586.4103634-CDS-A-nodosum_M_contig1175:89027..89228Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1175 89028..89228 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1175.7.1prot_A-nodosum_M_contig1175.7.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1175 87241..89228 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1175.7.1

>prot_A-nodosum_M_contig1175.7.1 ID=prot_A-nodosum_M_contig1175.7.1|Name=mRNA_A-nodosum_M_contig1175.7.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=278bp
KVIREAWAAEVSPSDAGQGGGWTIRRQIVEYRDGETTLEGLYARPEGDGL
SERIPGVIVAHTAVGSRSYFILWKLDSIARLGYAAFALDMFGAGRALWDR
AESLAARRPITEDRSLLQTRALAAVQTLGRLEGVDSDRVAAVGYCFGGMV
VLDLARMTPAVPGLKAVASLHGILAPMLPGAGKNPAAENAAVGPKVLVLH
ASDDPFVRPEQVQAMEEEFARRQANLEIVRYGGTARHAFTRPEKTEEADV
AAGLSYDSHADADSWRRVVELLREGLA*
back to top

mRNA from alignment at A-nodosum_M_contig1175:87241..89228+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1175.7.1 ID=mRNA_A-nodosum_M_contig1175.7.1|Name=mRNA_A-nodosum_M_contig1175.7.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1988bp|location=Sequence derived from alignment at A-nodosum_M_contig1175:87241..89228+ (Ascophyllum nodosum dioecious)
AAGGTTATCCGAGAAGCCTGGGCCGCGGAAGTTAGCCCATCAGACGCCGG CCAGGGTGGCGGCTGGACCATCCGACGCCAGATCGTGGAGTATCGCGACG GAGAGACGACACTAGAGGGGCTGTATGCGAGGCCGGAGGGGGACGGGTTG TCGGAACGGATCCCCGGCGTCATTGTCGCGCACACCGCGGTCGGGTCTCA GGAAGGCGCGCATAGATTAAGCCAGTTGTCTTTCTAAAGTAAAACGTACC CAGTACACACAAGCGATTGTCCTTGATGGCTGATGCGTGTCGAGGTCTTG CGCGCAATGATCGCCGCGCCTCCTCAGGTGACGTGTTGCTATTTCATTCG TTTTACCTTGTGTTTGGCACTGGATGCAATCCGCCGGCCACCCGAGACGA TCTGCTAACGCCGCCGCAGCTGTAGGTAGGTGGAATGGTCACGTTGCCGA TGCCACCGCAGGTCGCGCAGCTGTGCATTATTTGTGTTTCCAAGTTTCAA GAATATGCCGCGCGTTCTCCCCAGCGCATCGGCGGTGCGCGGAGCCGTTC CTAGTAGTAATCACACCATGCCAAAAAACGTTTGAACCAGTCGACACGGA CGAAGCGCAGGTTATTACAGCGCCTATTGCTCGCCGATGTACTCTTTCAC TCATTTATTTTGTGTGGTTTGCCTTGGCCCCGCCTTCCCGTTCTCGGATA TCCGCGCAACACTCGAAAACCGACTAGACTTCATCCTGTGGAAGCTGGAC TCTATCGCCCGCCTTGGCTACGCGGCCTTCGCGCTCGACATGTTCGGAGC CGGTCGCGCGCTGTGGGACCGCGCGGAGAGCCTTGCCGCGCGACGACCCA TCACGGAAGATCGATCCCTCCTGCAAACCCGCGCCCTCGCGGCGGTGCAA ACGCTCGGTCGTCTCGAGGGGGTCGATTCTGATCGTGTCGCTGCGGTCGG CTACTGCTTCGGGGGTATGGTTGTCCTCGACCTGGCGAGAATGACTCCGG CAGTTCCCGGACTCAAGGCCGTCGCTTCGCTACACGGGATTCTCGCGCCG ATGCTGCCCGGCGCGGGAAAGAATCCGGCAGCGGAAAACGCTGCGGTCGG GCCCAAAGTGCTCGTGCTTCACGCCTCCGACGACCCGTTTGTCCGGCCTG AACAGGTTCGTTTATAATGTACGAGTACTGACACCGGGACTGAGTTGGGC GGGATGGCATAACTTCGTAGTTTCAGCGTAGAAGGAAGCGGGAGATATTG GCGTGGGTGCACAGGGCAGCGGGATCGATAGATGGAGATCGTTACTGTGG GTGAGTGCAAAGCACAGTGTTAATGGGGAGAGAGCAAGCAAGAAGTGAAG GACTACGGCGGAGGAAGCTACATTCGTGCGACTGTGGTGGTCCTTCGGCA CAGCGTCGCACCAAAGAGGTGGTTCAGTAGACGCTGCTCCATGACTCTAT TTTTTACTTGAAAGGCTGTTGCAAAGGTTCCCTTTTACTAAGTACAAGAG ACGCCGTCGGGGGCATATCGTGGGTACGGTACACGCGGTAGTCTCGTCAA TACACCCAATCGCGAACTTTTCCCCCCCCCACGATCTGCCAAATCTACAA AACCTCAATCTGGTACTTGTCTTCCTTGCGCGTCTAAAAATGATAACGGG GTGCGTGATTCTTTACTCAAGTATAATATAAAAAGGCTAATGCTAAAATA TAACACTGATTCACAGACACGCTTCTCCCTCTGCCCGGTGCACATTATAT AAATATATATACTATCAAACATCGTGTTGGGCGACAGGTACAAGCCATGG AAGAAGAATTCGCCAGACGACAGGCGAACCTCGAGATCGTCAGGTACGGT GGGACGGCGCGCCACGCCTTCACCAGACCCGAAAAGACGGAGGAGGCCGA TGTGGCTGCGGGGCTCTCGTACGACAGCCACGCCGACGCCGACTCGTGGC GAAGGGTCGTCGAGTTGCTCAGAGAGGGATTGGCGTAA
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig1175:87241..89228+

>mRNA_A-nodosum_M_contig1175.7.1 ID=mRNA_A-nodosum_M_contig1175.7.1|Name=mRNA_A-nodosum_M_contig1175.7.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=834bp|location=Sequence derived from alignment at A-nodosum_M_contig1175:87241..89228+ (Ascophyllum nodosum dioecious)
AAGGTTATCCGAGAAGCCTGGGCCGCGGAAGTTAGCCCATCAGACGCCGG
CCAGGGTGGCGGCTGGACCATCCGACGCCAGATCGTGGAGTATCGCGACG
GAGAGACGACACTAGAGGGGCTGTATGCGAGGCCGGAGGGGGACGGGTTG
TCGGAACGGATCCCCGGCGTCATTGTCGCGCACACCGCGGTCGGGTCGCG
CAGCTACTTCATCCTGTGGAAGCTGGACTCTATCGCCCGCCTTGGCTACG
CGGCCTTCGCGCTCGACATGTTCGGAGCCGGTCGCGCGCTGTGGGACCGC
GCGGAGAGCCTTGCCGCGCGACGACCCATCACGGAAGATCGATCCCTCCT
GCAAACCCGCGCCCTCGCGGCGGTGCAAACGCTCGGTCGTCTCGAGGGGG
TCGATTCTGATCGTGTCGCTGCGGTCGGCTACTGCTTCGGGGGTATGGTT
GTCCTCGACCTGGCGAGAATGACTCCGGCAGTTCCCGGACTCAAGGCCGT
CGCTTCGCTACACGGGATTCTCGCGCCGATGCTGCCCGGCGCGGGAAAGA
ATCCGGCAGCGGAAAACGCTGCGGTCGGGCCCAAAGTGCTCGTGCTTCAC
GCCTCCGACGACCCGTTTGTCCGGCCTGAACAGGTACAAGCCATGGAAGA
AGAATTCGCCAGACGACAGGCGAACCTCGAGATCGTCAGGTACGGTGGGA
CGGCGCGCCACGCCTTCACCAGACCCGAAAAGACGGAGGAGGCCGATGTG
GCTGCGGGGCTCTCGTACGACAGCCACGCCGACGCCGACTCGTGGCGAAG
GGTCGTCGAGTTGCTCAGAGAGGGATTGGCGTAA
back to top