mRNA_A-nodosum_M_contig1175.33.2 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig1175.33.2 vs. uniprot
Match: D8LC11_ECTSI (COX assembly mitochondrial protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LC11_ECTSI) HSP 1 Score: 142 bits (359), Expect = 1.760e-39 Identity = 70/97 (72.16%), Postives = 86/97 (88.66%), Query Frame = 1
Query: 1 MATVKQGGRDDRLNWSKRAEQRLQDELKEIALKKCDDSVAKFAACAKEKGMWVVFSCREQSRLMNECLHQHTNKGSFEQYKLDREMELYRASLEDKS 291
MAT+K GGR+DRL+WSKRAE RL++ELKEIALK+CDDSVAKFAACA+EKGM VVFSCREQ+ LMN CL+QHTN+ SF++YK +RE+EL+R + KS
Sbjct: 1 MATLKDGGRNDRLSWSKRAEHRLREELKEIALKRCDDSVAKFAACAREKGMLVVFSCREQNALMNSCLNQHTNEESFDRYKFEREIELHRETQAAKS 97
BLAST of mRNA_A-nodosum_M_contig1175.33.2 vs. uniprot
Match: A0A8K1C5Z8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C5Z8_PYTOL) HSP 1 Score: 93.6 bits (231), Expect = 1.610e-20 Identity = 44/86 (51.16%), Postives = 60/86 (69.77%), Query Frame = 1
Query: 7 TVKQGGRDDRLNWSKRAEQRLQDELKEIALKKCDDSVAKFAACAKEKGMWVVFSCREQSRLMNECLHQHTNKGSFEQYKLDREMEL 264
T K+ R RL+WS +AE +L+ EL +IA+ KC D+ KFA CA+E G+ V+F CREQ++ MN+CLHQ+TN F YK RE E+
Sbjct: 9 TAKERFRSSRLSWSNQAEHKLRQELNDIAIAKCRDTTEKFAVCARESGLMVIFRCREQNKAMNDCLHQYTNDEQFRVYKEKREKEI 94
BLAST of mRNA_A-nodosum_M_contig1175.33.2 vs. uniprot
Match: A0A7S2US42_9STRA (COX assembly mitochondrial protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2US42_9STRA) HSP 1 Score: 88.6 bits (218), Expect = 1.230e-18 Identity = 41/80 (51.25%), Postives = 59/80 (73.75%), Query Frame = 1
Query: 25 RDDRLNWSKRAEQRLQDELKEIALKKCDDSVAKFAACAKEKGMWVVFSCREQSRLMNECLHQHTNKGSFEQYKLDREMEL 264
R+ RL+WS +A+ RLQ EL E+AL+KC D V FA C+K+ G V++SCREQ++ MNECLH +T++ E Y+ +RE +L
Sbjct: 8 RNSRLSWSNQAQYRLQQELNEVALQKCADQVKAFADCSKDSGFLVIWSCREQNKAMNECLHSYTSQECLEAYQREREQQL 87
BLAST of mRNA_A-nodosum_M_contig1175.33.2 vs. uniprot
Match: A0A6G0WRQ8_9STRA (COX assembly mitochondrial protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WRQ8_9STRA) HSP 1 Score: 85.5 bits (210), Expect = 2.840e-17 Identity = 40/80 (50.00%), Postives = 57/80 (71.25%), Query Frame = 1
Query: 25 RDDRLNWSKRAEQRLQDELKEIALKKCDDSVAKFAACAKEKGMWVVFSCREQSRLMNECLHQHTNKGSFEQYKLDREMEL 264
R +RL WS +AE +L+ EL IAL+KC + + F C+KE GM VVF CREQ+R++NECLHQ+TNK + E + ++ E+
Sbjct: 19 RSERLQWSNQAENKLKQELNAIALQKCREYTSAFVECSKENGMMVVFKCREQNRVLNECLHQYTNKEALEALRAEKLNEI 98
BLAST of mRNA_A-nodosum_M_contig1175.33.2 vs. uniprot
Match: W7TAA2_9STRA (COX assembly mitochondrial protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TAA2_9STRA) HSP 1 Score: 82.8 bits (203), Expect = 2.230e-16 Identity = 42/82 (51.22%), Postives = 57/82 (69.51%), Query Frame = 1
Query: 19 GGRDDRLNWSKRAEQRLQDELKEIALKKCDDSVAKFAACAKEKGMWVVFSCREQSRLMNECLHQHTNKGSFEQYKLDREMEL 264
G R+ RL +SKRAEQ L+DEL A K+C + +A FAACAKE GM+V+F CR + MN CL Q+T++ FE++K R + L
Sbjct: 18 GSREGRLRFSKRAEQHLRDELALHARKQCQEPMAAFAACAKENGMFVIFKCRALNNAMNACLSQYTSESKFEEWKQTRGLSL 99
BLAST of mRNA_A-nodosum_M_contig1175.33.2 vs. uniprot
Match: A0A5D6XX76_9STRA (COX assembly mitochondrial protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XX76_9STRA) HSP 1 Score: 82.4 bits (202), Expect = 3.280e-16 Identity = 40/86 (46.51%), Postives = 58/86 (67.44%), Query Frame = 1
Query: 7 TVKQGGRDDRLNWSKRAEQRLQDELKEIALKKCDDSVAKFAACAKEKGMWVVFSCREQSRLMNECLHQHTNKGSFEQYKLDREMEL 264
T K+ R RL+WS +AE +L+ EL +IA+ KC D A FAACA+E+G+ VVF CR ++ MN+CLHQ T+ F+ Y+ R ++
Sbjct: 16 TAKEHFRSSRLSWSNQAEHKLRQELNDIAIAKCRDVTASFAACAQEQGLLVVFKCRALNKAMNDCLHQFTSDEQFQAYRDKRSKDV 101
BLAST of mRNA_A-nodosum_M_contig1175.33.2 vs. uniprot
Match: A0A485L188_9STRA (COX assembly mitochondrial protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L188_9STRA) HSP 1 Score: 81.6 bits (200), Expect = 7.890e-16 Identity = 39/80 (48.75%), Postives = 54/80 (67.50%), Query Frame = 1
Query: 25 RDDRLNWSKRAEQRLQDELKEIALKKCDDSVAKFAACAKEKGMWVVFSCREQSRLMNECLHQHTNKGSFEQYKLDREMEL 264
R RL WS +AE +++ EL IAL C D A F C+KE GM VVF CREQ+R++NECLH++T+K + E K ++ E+
Sbjct: 19 RTGRLTWSNQAENKVKQELNAIALANCRDKTAAFVECSKEHGMMVVFKCREQNRILNECLHEYTSKEALEALKANKMNEI 98
BLAST of mRNA_A-nodosum_M_contig1175.33.2 vs. uniprot
Match: UPI0009F62553 (uncharacterized protein DDB_G0275933 n=2 Tax=Epidendroideae TaxID=158332 RepID=UPI0009F62553) HSP 1 Score: 64.3 bits (155), Expect = 1.020e-9 Identity = 30/65 (46.15%), Postives = 47/65 (72.31%), Query Frame = 1
Query: 49 KRAEQRLQDELKEIALKKCDDSVAKFAACAKEKGMWVVFSCREQSRLMNECLHQHTNKGSFEQYK 243
K+ E+ L+ ++K+ ALK+CD VAK+A CA + + VV+ CR+Q++L+NECLH +TN E+ K
Sbjct: 14 KKVEEALRSKMKQKALKECDHYVAKYAECASGRTLSVVWLCRKQAKLLNECLHDYTNDSVLEEMK 78
BLAST of mRNA_A-nodosum_M_contig1175.33.2 vs. uniprot
Match: A0A7S2RG50_9STRA (COX assembly mitochondrial protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RG50_9STRA) HSP 1 Score: 62.8 bits (151), Expect = 5.830e-9 Identity = 25/70 (35.71%), Postives = 47/70 (67.14%), Query Frame = 1
Query: 43 WSKRAEQRLQDELKEIALKKCDDSVAKFAACAKEKGMWVVFSCREQSRLMNECLHQHTNKGSFEQYKLDR 252
WSK A+++++ + + + CDD V F C+KE G+ V+F CRE++++MNEC+ +T +EQ++ ++
Sbjct: 13 WSKAADEKIRKQFLAESRRICDDKVRAFVDCSKENGLMVIFRCREENKIMNECVQNYTTDEKWEQFRKEK 82
BLAST of mRNA_A-nodosum_M_contig1175.33.2 vs. uniprot
Match: A0A1X2G3U4_9FUNG (COX assembly mitochondrial protein n=1 Tax=Hesseltinella vesiculosa TaxID=101127 RepID=A0A1X2G3U4_9FUNG) HSP 1 Score: 60.1 bits (144), Expect = 4.210e-8 Identity = 27/59 (45.76%), Postives = 43/59 (72.88%), Query Frame = 1
Query: 76 ELKEIALKKCDDSVAKFAACAKEKGMWVVFSCREQSRLMNECLHQHTNKGSFEQYKLDR 252
ELKE ALKKCDD V +F +C+KE + V+++CR + + MN CL++ T++ ++ KLD+
Sbjct: 25 ELKEKALKKCDDYVKEFVSCSKEHNVTVMWTCRSKLKTMNTCLNEWTSREQLDKLKLDK 83 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1175.33.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 15
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1175.33.2 >prot_A-nodosum_M_contig1175.33.2 ID=prot_A-nodosum_M_contig1175.33.2|Name=mRNA_A-nodosum_M_contig1175.33.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=102bp MATVKQGGRDDRLNWSKRAEQRLQDELKEIALKKCDDSVAKFAACAKEKGback to top mRNA from alignment at A-nodosum_M_contig1175:203193..208233- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig1175.33.2 ID=mRNA_A-nodosum_M_contig1175.33.2|Name=mRNA_A-nodosum_M_contig1175.33.2|organism=Ascophyllum nodosum dioecious|type=mRNA|length=5041bp|location=Sequence derived from alignment at A-nodosum_M_contig1175:203193..208233- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1175:203193..208233- >mRNA_A-nodosum_M_contig1175.33.2 ID=mRNA_A-nodosum_M_contig1175.33.2|Name=mRNA_A-nodosum_M_contig1175.33.2|organism=Ascophyllum nodosum dioecious|type=CDS|length=306bp|location=Sequence derived from alignment at A-nodosum_M_contig1175:203193..208233- (Ascophyllum nodosum dioecious)back to top |