mRNA_A-nodosum_M_contig1175.27.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1175.27.1
Unique NamemRNA_A-nodosum_M_contig1175.27.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1175.27.1 vs. uniprot
Match: D8LC02_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC02_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 9.280e-10
Identity = 48/112 (42.86%), Postives = 62/112 (55.36%), Query Frame = 3 
Query:  987 MVDEATIIGSVAALAGCGCGIGACLFMEYSAERTEAKGALTEEARMKYSAKFMEDDNAAYQMRGGVDVDDLTYRMRQALRANKSDAELKEEEAKELQAAAAPKPEEN-DDGW 1319
            MV++  I G + A+AG   G G     E +  R+E +GAL+ E +MK  A FMEDD          DVDD+ Y MR+ALRAN++     EEE   L A A  + EE  DDGW
Sbjct:    1 MVEQDIIYGGLVAVAGLAVGAGMVALTEQAGVRSEERGALSYERKMKMQAMFMEDDVVEE-----TDVDDVRYNMRKALRANQT-----EEELLALTADARKRAEEEADDGW 102
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1175.27.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LC02_ECTSI9.280e-1042.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1175contigA-nodosum_M_contig1175:180799..185568 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LC02
Model size1767
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorychloroplast
Exons4
Evalue2.33e-11
EggNOG OGs2E97Y@1|root,2SFM6@2759|Eukaryota
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-20_003940.1
Cds size552
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1175.27.1prot_A-nodosum_M_contig1175.27.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1175 181244..184661 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866588.0751991-UTR-A-nodosum_M_contig1175:180798..1812431680866588.0751991-UTR-A-nodosum_M_contig1175:180798..181243Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1175 180799..181243 -
1680866588.1189837-UTR-A-nodosum_M_contig1175:184661..1849711680866588.1189837-UTR-A-nodosum_M_contig1175:184661..184971Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1175 184662..184971 -
1680866588.257911-UTR-A-nodosum_M_contig1175:185108..1855681680866588.257911-UTR-A-nodosum_M_contig1175:185108..185568Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1175 185109..185568 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866588.0894525-CDS-A-nodosum_M_contig1175:181243..1813301680866588.0894525-CDS-A-nodosum_M_contig1175:181243..181330Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1175 181244..181330 -
1680866588.099612-CDS-A-nodosum_M_contig1175:181761..1818811680866588.099612-CDS-A-nodosum_M_contig1175:181761..181881Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1175 181762..181881 -
1680866588.1086812-CDS-A-nodosum_M_contig1175:184316..1846611680866588.1086812-CDS-A-nodosum_M_contig1175:184316..184661Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1175 184317..184661 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1175.27.1

>prot_A-nodosum_M_contig1175.27.1 ID=prot_A-nodosum_M_contig1175.27.1|Name=mRNA_A-nodosum_M_contig1175.27.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=184bp
MPSTRAIGAALLLFFLPHAMAFLPVTALSRTARSTKVFFSPGSGCGAGSF
DAGTVASVRTQHRRSTSSSALTMVDEATIIGSVAALAGCGCGIGACLFME
YSAERTEAKGALTEEARMKYSAKFMEDDNAAYQMRGGVDVDDLTYRMRQA
LRANKSDAELKEEEAKELQAAAAPKPEENDDGW*
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mRNA from alignment at A-nodosum_M_contig1175:180799..185568-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1175.27.1 ID=mRNA_A-nodosum_M_contig1175.27.1|Name=mRNA_A-nodosum_M_contig1175.27.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=4770bp|location=Sequence derived from alignment at A-nodosum_M_contig1175:180799..185568- (Ascophyllum nodosum dioecious)
ACCACAACAAAGTTGTAAGTCAACTGAGAGAAAGCTCTACACGCCCCTGT
ACTCAGCTGCGGGAATCCAGGCCATACAGGTGAAGAGATTGTTCATGTGG
CATCACAATATGCCGTGCTCGAGTTCATGCAGTCAAGCTGGTGTCACTTC
CAAGACTCCCCTCCGTAGGCGCCTGTACTCATTTGCGTGTTTCCTTCGAG
TACTGCTCGTACGTGTCGTGGTTCGGGGTTATTATCATTTATAGGTTGAC
GTGTCTCGAATCGTTCGCCGCATGTGCGCATGCGTGTGTTTGTTGTGTCT
TCGGAAGGCACGGGCTTTCAGGACTACTTCATGAAGCACGATCACAGGCT
TTTCCACGAAGAGACTTGTGTCCGCTGTTGATGTGGTCCGTTTGCGTCCC
TATACTTGACTTGTACGCGTAGTGTACCTGCCAATACACATAGTGCTAGG
CTCTGCCACGAGGTATGTGCGTTGGAGTATCGCTGGTACAGGCAGTACAT
TGTTTGTTAGGTGCAGGAAGAAGAGTACAACCGTTACGAGAAAGCACAGA
CATTATTCCAGGGTGCGGTTACTCTTCCGATCTACCGATACGTACAATAC
TATATCTGTTTTATAGAATCTTGTACAGTCAGGCTATTATATGTGTCGTG
GCACCTCTGTCAGTCGCTGTGACCAGGTCAGACCTTCTCGAGCGCAAGCT
GGCCTTGTCATCATCATCAGTGTCTGGTGGCATCGCGTCCCCACCCACCC
TCTTTCTTACTCTCACTGCGCCCACTTTCGCTGACGCCTCCCTACGTCCC
CTCTTCCATCCCTCCCTCCGAGACTCAGAACACCTCAACACGCCAACAAA
CGCAGGGGCAGACATTACAACAGCACACAACTACGGTCGTCCTCGGCTAA
TATTACCATGCCGTCCACCAGAGCGATCGGAGCGGCGTTACTCCTCTTCT
TCCTACCCCATGCGATGGCCTTCCTCCCCGTGACTGCTCTGTCGCGGACC
GCCCGCTCGACCAAAGTTTTTTTTTCGCCCGGCAGCGGCTGCGGTGCAGG
CTCGTTTGATGCCGGTACCGTTGCCTCGGTCCGCACGCAACATCGCCGAT
CGACATCCTCGTCCGCCCTCACCATGGTCGACGAGGCGACTATCATCGGG
AGCGTGGCGGCACTGGCCGGTTGCGGCTGCGGGATCGGGGCGTGCCTGTT
CATGGAATACTCGGCGGAGCGGACGGAGGCGAAGGGAGCGCTTACCGAGG
AGGTGATCAGTCTTGTTGTTCAGTATTGTGTCCATTCTCAGTTGCGAATG
CGTCTTCTCTTTTTACGAAGAAATTTTCGGGCAACACGTTTGAGGATGAC
GTGTGGTCTGCGATCATGTACCTGGTATAGAGTACATGTTATGTCCGGAG
TGTCGAGACCGGGCGGGACCGGACGACCGAACCAGGCTCGCGATGCCAAA
TTCTTAGGCGCGGACGGGGACGGGGTAAAAAACATTTTCTGCGTTCGGCA
GACCAAGAGCTGGATCGGCAACCTTACCCGGTTGATCCATACTCTACCAA
GAGTGCTGACCATACATACAGACATACATCAAATACTTGACTTACTGAGC
ACAGGTGTTGATGTGCCGACCAGAGACCCATGAACAGCAACACTTACAGC
ACAGCTGTGCTCGTAGTATAAATAATAGATGAACCTTGTGTGATTACAGT
ACTTCAAGTAGATTGGCGCATTTGGTACACTAGCTCTATTATTATAAAAC
TAATAACATACCAGAGGACGTATTATAATATATTAGTATTACAGTAGAGC
TATTATAGTAAATTACGTATCAATAGCGCTTTACTGCTGTTGGCACTGAC
GGGCGTGAGGCTCATCGGAGGAATTGGGAAAGGTTAAGGGTCGAGCGATA
CGATCTCTATCGAAACGTACGTGCTGATGCTGGAGAGTACACACCGTTGT
CGCCAGTAAGTGCCTCAGGCGTCCGTTCCATCCGGACAAAGTCTCCTATT
AATAGTAACACGATTGCACTGCGGCTGTTATAGTTATAGCATGTTGAAAG
TACCCGCGATACATACGTAGCATTGACGAGATTCAACACCACAGCAGTGT
TGCAGTGTTGCCTCTCCCATGCAAACAAACACCAACGCAAATAAGTACCA
GGTATGTACCATGTATCATGGCAGAAGATTTTGCTGTAGCGAACAAACCG
AGTACTTGAAACTGTGCGGGACGCGATCGACGTGTTTTGGGGATCTCCGG
CGTGTTCCAAAATCAAGTAACTATAAAACGCCTCCATAGGGTTTGCTGTT
CATAATGATATCTGGTAGTCCGTTAGCCACCTCGCACACGCGTACAGTAA
CTATTAATATCGTACTAATTAGGAAAGTAGTGCATACTTCGAAGTATGTA
CTCCGTAGTATCTATTAAAGTGTGATCCTTAGTTGAAAAGGCCCTCGATT
GCTCGCCCACTAAAAACTACCTTACCCATCGCATACAATCGGCGAAGATA
TTAAATACCAGACAGTTTTATTACGAAGCACCAGCGTGGTATTAATAGGA
GACGGGGGAGAGGGGGGATCCAAACCGGCAGGGATGGGTTAAGTTAACAT
CATATTGGAACGAAATGATGCAGTCGCACGTTAGATGGATGACGCAATCG
ACACAAAAGTAGGGTAATAAGTTGAAATAACGCCTCCATCACCTTGTTTG
AGTCGCAATCCCGGGGGGCCTGGTGTTTTGCGACGCGGGGTGTGCGATCA
AGATGTGACCCGTTGACCTTCTCAGGACCTCACAACGGATATTAGCTTTG
TACGTCGCCGTCTGATTTGTGTCGACTCAGGTTTCCTGTGGCAAAGAGAC
AACAATCAATACCGTACACCAATTATACTGAAGTACTCCTATTCAGTATA
TAACTGAAAGTAAAGTATTAATAGGTCAACAACACCACCCGTGTTGTGTA
CATGTGCTATTATTAATAGTATTAATCCCACAGCAGTAGCAGTAGCAGCA
GGCTGTCGGTCAGAAAACGACGGGTCATGTTTCAGTTTATTCCTTCAGTT
TGGAAGTAGTCTGCGATCAATAGAGCATTAGACTATCAATACGAGGTACG
AACTCTTCCCGAATACGAACGATCTGCGCCTTTCAGCGGAAAAAAAGCGA
GCTATCCGATTCCAAGCACGAAGAGGAGAGTCATGTTAGTACTATATTAT
AATATCTCCTAATACTATCGCACAGAGGATAAAGGGGATGAAGATGATAT
TGAGAGTATCATCCCCCCCCCGCATGCATCGTGACCCATGAAAAAGCCTC
CGTAGATTAAAAAAGCCTGCGTGGATTCCAAACACAACCCGTGCAACCCG
CCCCTCCAGCCATGGAATATTTTCATTTCCCTAAAACCCCGGAGTTTATT
AAAGGGCCTGCTTAAAAAATGATCTCTGCTTCAGTTGGAAAACTTGGTTT
CGCCTTTTGGTAAACCTTTGACGTATAGTGCAGAAGGGAAGCTTTGGTTC
AGAGGGGGACTTCAACTGTTCACCCCCGTATCACGTGGAATCTCATATCT
TATGAAGGAAGCCATCAATCAGAGGAGGCTGCTGAAGGCGCGTTTCGAAG
TCTTCACTTGCGGTCAGTCCTCTGTTAAAGGCAAACTCGCTTTTTTGTTT
CCACAAACGTATGACGCGATTGTTTCTCTCTCCTCAGGCTAGGATGAAGT
ACTCGGCGAAGTTCATGGAGGACGACAACGCCGCGTATCAGATGCGTGGG
GGTGTTGACGTGGACGACCTGACGTACCGCATGCGCCAGGCCCTTCGTGC
CAACAAGGTGCATAGAAAATATCTACAGTGCTGTGTAATAGAAGGCGACG
GCACGTTGCATCCAAGACGCAAATCGCTTCCACGACCGATCGATTATCCG
CAACAGATGTAGCTATGTCCTCGCATGTGACGATGGCACAGGGTGCACTG
TGAGCAGTTGTAACTTTGAAAGTTCCAGAGATCAACGAGCGTTCATTGTT
AGGGAGAAAAAAAAAGGTACATATATATATACATAACGACGTGGTTGTAG
AGCTACAGCATAAAGAGTGGTTTGATAACCCAAACGAACCACACAGGGAG
AGATGTTTGTGTTAAGGTTCGCTTTCTCACGCACCGACTTTCGCTTGAGC
GAGGCATTGATCTCACTCCTGTCAATGACACGAAAACCCCTTTCCCCTGG
TATGTGCATGCGAAATGACGTCCTTTGTCACTCAAAAGTCGGACGCGGAG
TTAAAAGAAGAGGAAGCGAAGGAGCTCCAAGCGGCAGCAGCGCCGAAGCC
AGAAGAGAATGACGACGGGTGGTGATCGTTTCTCAAAACAAAAACCAACC
TTGTCCGTTCCCTTACTCTTTCCCCGGGAAGGATTCGACTTGGTTTTGTT
CTGTAATTAGCATTATGCACCAAGTAGCTGCCTCACGAGACAAAAAGAAA
GAATAGAAAGATGTACGCAGCACGAGCGTCTCTTGAGGCAGTGGTACACA
CCGACTGACGTGTCATAGACAACCCTGGGCTCGATATACTTGTGGAAGAG
GAGACTGGGGAGGGTTGGGAAAGATGAATATTTTCAACGGGCAATAATTT
ATGAAATTGTTCAACTAAAAGGGAGCGCAATAGATCCAGGAAATGACTCG
AGCCTCGCGTGATGCGGTTTACGTTGACATTTTTTTTCGAGAGTGGTTGC
GGTTCTTCCAAGCGTACAGAGCGTGCAAAGCTTGGCCTTTCAACCGAGGA
CAACTTTTGCAAGAATTGTA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1175:180799..185568-

>mRNA_A-nodosum_M_contig1175.27.1 ID=mRNA_A-nodosum_M_contig1175.27.1|Name=mRNA_A-nodosum_M_contig1175.27.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=552bp|location=Sequence derived from alignment at A-nodosum_M_contig1175:180799..185568- (Ascophyllum nodosum dioecious)
ATGCCGTCCACCAGAGCGATCGGAGCGGCGTTACTCCTCTTCTTCCTACC
CCATGCGATGGCCTTCCTCCCCGTGACTGCTCTGTCGCGGACCGCCCGCT
CGACCAAAGTTTTTTTTTCGCCCGGCAGCGGCTGCGGTGCAGGCTCGTTT
GATGCCGGTACCGTTGCCTCGGTCCGCACGCAACATCGCCGATCGACATC
CTCGTCCGCCCTCACCATGGTCGACGAGGCGACTATCATCGGGAGCGTGG
CGGCACTGGCCGGTTGCGGCTGCGGGATCGGGGCGTGCCTGTTCATGGAA
TACTCGGCGGAGCGGACGGAGGCGAAGGGAGCGCTTACCGAGGAGGCTAG
GATGAAGTACTCGGCGAAGTTCATGGAGGACGACAACGCCGCGTATCAGA
TGCGTGGGGGTGTTGACGTGGACGACCTGACGTACCGCATGCGCCAGGCC
CTTCGTGCCAACAAGTCGGACGCGGAGTTAAAAGAAGAGGAAGCGAAGGA
GCTCCAAGCGGCAGCAGCGCCGAAGCCAGAAGAGAATGACGACGGGTGGT
GA
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