mRNA_A-nodosum_M_contig1175.22.3 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1175.22.3
Unique NamemRNA_A-nodosum_M_contig1175.22.3
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig1175.22.3 vs. uniprot
Match: D8LBZ9_ECTSI (TLDc domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBZ9_ECTSI)

HSP 1 Score: 410 bits (1053), Expect = 3.720e-140
Identity = 211/309 (68.28%), Postives = 243/309 (78.64%), Query Frame = 1
Query:  115 LQDTASFT----ASWSPHGSYSRRRVELDDVMTVFEGKYC--GGARGHVRKELRAKRDVEEEQ---ESQDIVEKLFGMFFGQKEDAPA-NLKRMTIESFPDQYPAEKVLQADPVPGDSKDVAVIRPLLKQTELESRKLKLAFDAKRNGWKAAAFHKGVDFKGPGIVVAKTKGGAVVGGYNPKGWAGYGEYRPGISAFLFTWRDGDTSKRAVKLRKIGGAGLAVWDRPECGPLFGSEGFGVGLQQGSERLGRSKLGSYYERLPG--GVNSIFSPGDSGGMAELVDLRVYVGVYEKGETIPFDDAIPLSIT 1005
            LQ   SFT    A    H S S             E + C    +RG     +RAK    EE+   E QD++EK F MFFG K+DAP  +L R+T++ FPDQYPAEK+LQA+PV GDSKD+AVIRPLLKQTELE RKLKL +DAKRNGWK AAFHKGVDFKGPG+VV KTKGGAVVGGYNPKGW GYGEYRPG+SAFLFTWRDGDT+KRA+KLRKIGGAGLAVWD+PECGPLFGS+GFGVG+Q+GSER+GRSKLGSYYERLP   G  SIF+PGD+GG+AE+VDL+ YVGVYE+GE IPFDDAIP S++
Sbjct:   14 LQGVNSFTVPPQALGKTHRSLSAPSSATVVTRVEHEDRTCRTSSSRGSRSTCVRAKGGTGEEEAGEEQQDVIEKFFSMFFGNKDDAPGGDLDRITVKKFPDQYPAEKILQAEPVKGDSKDMAVIRPLLKQTELEFRKLKLVYDAKRNGWKPAAFHKGVDFKGPGLVVGKTKGGAVVGGYNPKGWVGYGEYRPGLSAFLFTWRDGDTNKRAMKLRKIGGAGLAVWDKPECGPLFGSDGFGVGMQKGSERMGRSKLGSYYERLPAAYGGASIFAPGDNGGIAEMVDLKAYVGVYERGEKIPFDDAIPFSLS 322          
BLAST of mRNA_A-nodosum_M_contig1175.22.3 vs. uniprot
Match: A0A6V1NAM7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NAM7_HETAK)

HSP 1 Score: 332 bits (852), Expect = 6.560e-110
Identity = 164/253 (64.82%), Postives = 196/253 (77.47%), Query Frame = 1
Query:  253 LRAKRDVEEEQESQDIVEKLFGMFFGQKEDAPANLKRMTIESFPDQYPAEKVLQADPVPGDSKDVAVIRPLLKQTELESRKLKLAFDAKRNGWKAAAFHKGVDFKGPGIVVAKTKGGAVVGGYNPKGWAGYGEYRPGISAFLFTWRDGDTSK--RAVKLRKIGGAGLAVWDRPECGPLFGSEGFGVGLQQGSERLGRSKLGSYYERLPGGVNSIFSPGDSGGMAELVDLRVYVGVYEKGETIPFDDAIPLSIT 1005
            L  K  + + QE QD VEKLF  FFGQKE+ P  LKR   E+FPDQ+PA K   ADPVPGDSKD+AV RPLLKQTELESRKLKL +DA +NGW   AFHKGVD  GPG++VAKTKGGAV+GGYNPKGW GYGEYRPG+SAFLFTW DG+T    +A+KLRKIGGAGLAV D+PE GP+FG++G  + +    +R+ +  LGSYYER+PGG  S+F+ G+S    ELVDL+ YVG+Y KGE IPF+DAIP S+T
Sbjct:   54 LLRKIQMNQGQEDQDPVEKLFSFFFGQKEEEPLGLKRFNKETFPDQFPATKTEFADPVPGDSKDMAVFRPLLKQTELESRKLKLVYDANKNGWNPTAFHKGVDKLGPGVIVAKTKGGAVIGGYNPKGWVGYGEYRPGLSAFLFTWPDGNTVDYTKALKLRKIGGAGLAVIDKPEEGPVFGADGLCIRMAPKKQRIAQCSLGSYYERMPGGKKSLFAQGESLANTELVDLKAYVGIYAKGEEIPFNDAIPFSLT 306          
BLAST of mRNA_A-nodosum_M_contig1175.22.3 vs. uniprot
Match: A0A835YK91_9STRA (TLDc domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK91_9STRA)

HSP 1 Score: 313 bits (802), Expect = 3.770e-103
Identity = 159/249 (63.86%), Postives = 189/249 (75.90%), Query Frame = 1
Query:  283 QESQDIVEKLFGMFFGQK---EDAPANLKRMTIESFPDQYPAEKVLQADPVPGDSKDVAVIRPLLKQTELESRKLKLAFDAKRNGWKAAAFHKGVDFKGPGIVVAKTKGGAVVGGYNPKGWAGYGEYRPGISAFLFTWRDGDTSKRAVKLRKIGGAGLAVWDRPECGPLFGSEGFGVGLQQGS-----ERLGRSKLGSYYERLPGGVNSIFSPGDSGGMAELVDLRVYVGVYEKGETIPFDDAIPLSIT 1005
            ++ QDIVE+ FG  FGQK   ++AP  +KRMTIE+FPDQYPA K   ADPV GD+KD+A+ RP L QT LE RKLK  +DA R+GW+ AAFH+GVD KGPG+V+A+T GGAVVGGYNPKGW G  EYRPG+SAFLFTW DGDTSKR VKLRK+GGAGLA +DR   GP FGSEG  V L  GS     ER+ R KLG+YYER+P G NS+F+PG+ G  A+L +L+ +VGVY K E IPFDD I LS T
Sbjct:    4 EQQQDIVERFFGFVFGQKALDDEAPMGMKRMTIENFPDQYPATKDRWADPVAGDTKDMALFRPALAQTMLEKRKLKCVYDAARDGWRPAAFHRGVDKKGPGVVLARTAGGAVVGGYNPKGWVGESEYRPGLSAFLFTWPDGDTSKRPVKLRKVGGAGLACYDRASTGPFFGSEGLCVPLDAGSGGGGAERVARCKLGAYYERMPDGGNSMFAPGEKGA-AQLTELKAFVGVYAKDEEIPFDDVIYLSFT 251          
BLAST of mRNA_A-nodosum_M_contig1175.22.3 vs. uniprot
Match: A0A7S4EVG5_CHRCT (Hypothetical protein n=2 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4EVG5_CHRCT)

HSP 1 Score: 265 bits (678), Expect = 9.710e-83
Identity = 137/244 (56.15%), Postives = 172/244 (70.49%), Query Frame = 1
Query:  274 EEEQESQDIVEKLFGMFFGQKEDAP-ANLKRMTIESFPDQYPAEKVLQADPVPGDSKDVAVIRPLLKQTELESRKLKLAFDAKRNGWKAAAFHKGVDFKGPGIVVAKTKGGAVVGGYNPKGWAGYGEYRPGISAFLFTWRDGDTSKRAVKLRKIGGAGLAVWDRPECGPLFGSEGFGVGLQQGSERLGRSKLGSYYERLPGGVNSIFSPGDSGGMAELVDLRVYVGVYEKGETIPFDDAIPLSI 1002
            E+ +   D +EKLFG+FFG  ++   A L R    S PD YPA K   ADPV GD ++  ++RPLLK T LE   L+LA+DA R+GW+AA FH+ VD  GP IVV +T+GGAV GGY PKG+AGYGEYR  I+AFL+TW DGDT +  +KL+K+GGAGLA  D PE GP FG+EG  + +  GSER+ RSKLG YYER+P G  SIF+  D+    EL +LRVYVGV+ +GE IPFD AIP +I
Sbjct:  129 EDNKNEPDFIEKLFGVFFGAPQEGEVAGLARTA--SAPDTYPATKTEFADPVEGDIEEATILRPLLKNTNLEYLPLRLAYDANRDGWRAADFHEKVDKTGPCIVVCETEGGAVCGGYAPKGFAGYGEYRGSIAAFLYTWPDGDTDRAPIKLQKMGGAGLATIDEPETGPRFGAEGLSIPMDPGSERIARSKLGPYYERMPDGGGSIFAANDNSKRCELKELRVYVGVWPEGERIPFDGAIPFAI 370          
BLAST of mRNA_A-nodosum_M_contig1175.22.3 vs. uniprot
Match: A0A7S1TFM7_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TFM7_9RHOD)

HSP 1 Score: 254 bits (649), Expect = 2.560e-79
Identity = 133/259 (51.35%), Postives = 176/259 (67.95%), Query Frame = 1
Query:  253 LRAKRDVEEEQESQDIVEKLFGMFFGQKEDAPANLKRMTIESFPDQYPAEKVLQADPVPGDSKDVAVIRPLLKQTELESRKLKLAFDAKRNGWKAAAFHKGVDFKGPGIVVAKTKGGAVVGGYNPKGWAGYGEYRPGISAFLFTWRDGDTSKRAVKLRKIGGAGLAVWDRPECGPLFGSEGFGVGLQQ-------GSERLGRSKLGSYYERLPGGVNSIF--SPGDSGGMAELVDLRVYVGVYEKGETIPFDDAIPLSI 1002
            L +K+D E   E  D++EKLFG+FFG+KE+ P  LKR   + FP+Q+PA     A+ V GDSKDVA+ RPLL +T+L  R L+L FD   +GW A AFH+ VD +G G+V+ +T  G V GGYNPKGW GYGE R  +++FLFTW DG+T+K A+K+RK+G A L+V D PE GP FG++   + LQ        GSE+  RSKLGSYYERLP G N +F  S     G   +  ++V+VGVYE+GE IPF+DA+P S+
Sbjct:   42 LESKQDGEGSGEDSDLLEKLFGVFFGKKEENPLGLKRFDRDRFPEQFPAPLDEFAEAVQGDSKDVALFRPLLARTQLCRRSLRLVFDTDSDGWTAEAFHRAVDRQGAGVVLLRTVDGVVCGGYNPKGWVGYGESRGSVASFLFTWPDGNTNKPAMKMRKVGQAYLSVLDNPETGPQFGADSLVIPLQDTRLRGPDGSEKQARSKLGSYYERLPDGRNCLFPDSSHPRKGYCYVDSVKVFVGVYEEGEQIPFNDALPFSL 300          
BLAST of mRNA_A-nodosum_M_contig1175.22.3 vs. uniprot
Match: A0A5J4YZD4_PORPP (TLDc domain-containing protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YZD4_PORPP)

HSP 1 Score: 248 bits (632), Expect = 1.080e-76
Identity = 128/258 (49.61%), Postives = 177/258 (68.60%), Query Frame = 1
Query:  256 RAKRDVEEEQESQDIVEKLFGMFFGQKEDAPANLKRMTIESFPDQYPAEKVLQADPVPGDSKD--VAVIRPLLKQTELESRKLKLAFDAKRNGWKAAAFHKGVDFKGPGIVVAKTKGGAVVGGYNPKGWAGYGEYRPGISAFLFTWRDGDTSKRAVKLRKIGGAGLAVWDRPECGPLFGSEGFGVGL-------QQGSERLGRSKLGSYYERLPGGVNSIFSPGDSGGMAELVDLRVYVGVYEKGETIPFDDAIPLSI 1002
            R   + ++ +E  D++E+       +KE  P  L R   + FP+ +PAE   QADPV GD KD  + +IRP++ +T L++R ++  FDA+ +GWKAA+FH+ VD +GP +V+A+TKGGAVVGGY+PKGW GYGE R  I+AFLFTW DGDTSKR++KLRKIG A +A  D+PE GP FG+EG  + L         G+ER+ R KLG+YY++LP G  S+F+ G+ G + ELV LR +VG+Y   E IPF DA+P S+
Sbjct:   49 RLGAEQQDAEEDLDVIERAMKWLGFKKEKTPFGLARFDRDKFPELWPAELEEQADPVEGDEKDPDLQLIRPMMARTSLQTRPMECVFDAEVHGWKAASFHRCVDKRGPAVVLARTKGGAVVGGYSPKGWVGYGESRGSIAAFLFTWPDGDTSKRSIKLRKIGMASMASMDQPESGPRFGAEGLTIPLLDARATEYDGTERVARCKLGTYYDKLPDGSKSLFAHGE-GLLTELVSLRAFVGIYGSDEEIPFLDALPFSL 305          
BLAST of mRNA_A-nodosum_M_contig1175.22.3 vs. uniprot
Match: A0A7S2ZTI4_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZTI4_9RHOD)

HSP 1 Score: 245 bits (626), Expect = 3.690e-76
Identity = 126/256 (49.22%), Postives = 178/256 (69.53%), Query Frame = 1
Query:  256 RAKRDVEEEQESQDIVEKLFGMFFGQKEDAPANLKRMTIESFPDQYPAEKVLQADPVPGDSKDVAVIRPLLKQTELESRKLKLAFDAKRNGWKAAAFHKGVDFKGPGIVVAKTKGGAVVGGYNPKGWAGYGEYRPGISAFLFTWRDGDTSKRAVKLRKIGGAGLAVWDRPECGPLFGSEGFGVGLQQ-------GSERLGRSKLGSYYERLPGGVNSIFSPGDSGGMAELVDLRVYVGVYEKGETIPFDDAIPLSI 1002
            R++R V  E+   D+ EKLFG+ FG++E+ P   +R   + FP+QY A     ADPV  D++++A+ RP+L +T+L +R+L+L +DA+ +GW A+AFH+ V+ KG G+V+A T+GG V GGYNPKGW GYGE R  +++FLFTW  GDTSK A+KLRK+GG  ++V D PE GP FG++G  V L         GSE++  SKLG++YE  P GV  +FS  + G   +LV LR Y GVYE+GE IPFDDA+P+++
Sbjct:   27 RSRRVVMREK---DLGEKLFGLIFGKQEETPLGFQRFDRDRFPEQYEATLDEFADPVASDTEEMALFRPMLARTQLVTRELQLLYDAEEHGWTASAFHECVNKKGAGVVLAVTEGGTVCGGYNPKGWVGYGESRGSLASFLFTWPGGDTSKPAIKLRKVGGKSMSVLDDPETGPKFGADGLVVMLMSPFQTELDGSEKIASSKLGTFYEVRPDGVRHLFSKAE-GKKTKLVSLRAYFGVYEEGEEIPFDDAVPVAL 278          
BLAST of mRNA_A-nodosum_M_contig1175.22.3 vs. uniprot
Match: A0A1X6PE37_PORUM (TLDc domain-containing protein (Fragment) n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PE37_PORUM)

HSP 1 Score: 239 bits (611), Expect = 2.250e-74
Identity = 128/243 (52.67%), Postives = 158/243 (65.02%), Query Frame = 1
Query:  301 VEKLFGMFFGQKEDAPANLKRMTIESFPDQYPAEKVLQADPVPGDSKDVAVIRPLLKQTELESRKLKLAFDAKRNGWKAAAFHKGVDFKGPGIVVAKTKGGAVVGGYNPKGWAGYGEYRPGISAFLFTWRDGDTSK-RAVKLRKIGGAGLAVWDRPECGPLFGSEGFGVGLQ--------QGSERLGRSKLGSYYERLPGGVNSIFSPGDSGGMAELVDLRVYVGVYEKGETIPFDDAIPLSI 1002
            +E+LF  FFG  E  P  LKR   + FP+ YPA     A PV GD  +VA+ RPLL +T+L SR L+LA+DA  +GW A AFH  VDF+G  +V+A+T GGAV GGYNPKGW GYGE R  I+AFLFTW  GDT+  R +KLRK+G    AV D PE GP FG++   V LQ           +R+ RSKLGSY+ERLP G N +F+P ++G    L  LRVY GVY  GE IPF DA+P S+
Sbjct:    2 IERLFTFFFGAIEAEPLGLKRFDRDRFPELYPATLTETAPPVDGDGPEVALFRPLLARTQLASRPLRLAYDATVDGWTAEAFHGAVDFRGASVVLARTAGGAVCGGYNPKGWVGYGEARGSIAAFLFTWPTGDTAGGRPIKLRKVGRGATAVIDTPEDGPTFGADALVVPLQPPRAGWATDERDRVARSKLGSYFERLPNGRNHLFAPTEAGAGVTLEWLRVYQGVYADGEEIPFSDALPFSL 244          
BLAST of mRNA_A-nodosum_M_contig1175.22.3 vs. uniprot
Match: A0A448ZH24_9STRA (TLDc domain-containing protein n=2 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZH24_9STRA)

HSP 1 Score: 240 bits (612), Expect = 1.360e-73
Identity = 127/245 (51.84%), Postives = 162/245 (66.12%), Query Frame = 1
Query:  268 DVEEEQESQDIVEKLFGMFFGQKEDAPANLKRMTIESFPDQYPAEKVLQADPVPGDSKDVAVIRPLLKQTELESRKLKLAFDAKRNGWKAAAFHKGVDFKGPGIVVAKTKGGAVVGGYNPKGWAGYGEYRPGISAFLFTWRDGDTSKRAVKLRKIGGAGLAVWDRPECGPLFGSEGFGVGLQQGSERLGRSKLGSYYERLPGGVNSIFSPGDSGGMAELVDLRVYVGVYEKGETIPFDDAIPLSI 1002
            D E +  S D V+K+F +FFG+KE  P  +KR   E FP+QYPA     A+PV  D KD+AV+RP+LK T LE+R LKL + A R+GW   +FH+ VD  G G+VV  T+ G V GGYNPKGW GYGE R  I+AFL+ +  G TS+   KLRK+GG  LA  D PE GP FG++   + L++ S R+ RSKLGSYYER PGG N++F  G  G    L DL+VY GVY +GE IPF DA P ++
Sbjct:   71 DEEPDDFSDDPVDKIFSVFFGKKEATPMGMKRFGRERFPEQYPAVLDEWAEPVASDDKDMAVLRPMLKNTNLETRGLKLTYSANRDGWDPVSFHRKVDKLGGGLVVCTTEDGLVCGGYNPKGWVGYGEARGSIAAFLYVFTKG-TSELPTKLRKVGGPSLAQQDLPETGPSFGADSLVIPLEKSSPRVARSKLGSYYERFPGGGNTLF--GKRGSSVRLKDLKVYHGVYAEGEYIPFTDAEPFAL 312          
BLAST of mRNA_A-nodosum_M_contig1175.22.3 vs. uniprot
Match: A0A7S0DY99_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0DY99_9CRYP)

HSP 1 Score: 246 bits (627), Expect = 2.030e-73
Identity = 133/260 (51.15%), Postives = 166/260 (63.85%), Query Frame = 1
Query:  265 RDVEEEQESQDIVE-----KLFGMFFGQKEDAP--ANLKRMTIESFPDQYPAEKVLQADPVPGDSKDVAVIRPLLKQTELESRKLKLAFDAKRNGWKAAAFHKGVDFKGPGIVVAKTKGGAVVGGYNPKGWAGYGEYRPGISAFLFTWRDGDTSKRAVKLRKIGGAGLAVWDRPECGPLFGSEGFGVGLQQ-------GSERLGRSKLGSYYERLPGGVNSIFSPGDSGGMAELVDLRVYVGVYEKGETIPFDDAIPLSI 1002
            +D+E  + +Q + E     K F   FG+   +P    LKR     FP+ YPA     A PV  D       RPLL +T LE R+LKL FDA R+GW   AFH  VD  GPG+V+A+T+ GAVVGGYNPKGW GYGEYR  I+AFLF+W DGDTSK A+KLRK+GGAGLA  D PE GP FG++G  + L+        G ERL R KLG YYE+ P G N+IF+  +    A L DL+VYVGVYE+GE IP++DA+P  +
Sbjct:  254 KDLESSRVAQSVAEPEGFEKFFASLFGKIGASPEQVGLKRFDQSKFPELYPATLTEFAAPVASDDATAQQFRPLLAKTSLEKRELKLVFDANRDGWTPGAFHGAVDKLGPGVVLARTEQGAVVGGYNPKGWVGYGEYRGSIAAFLFSWPDGDTSKPAIKLRKVGGAGLACIDDPESGPRFGADGLHIPLEAPRSEAEAGRERLARCKLGPYYEKRPDGSNTIFTKAEKA-TATLTDLKVYVGVYEEGEEIPYNDALPFQL 512          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1175.22.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBZ9_ECTSI3.720e-14068.28TLDc domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A6V1NAM7_HETAK6.560e-11064.82Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A835YK91_9STRA3.770e-10363.86TLDc domain-containing protein n=1 Tax=Tribonema m... [more]
A0A7S4EVG5_CHRCT9.710e-8356.15Hypothetical protein n=2 Tax=Chrysotila carterae T... [more]
A0A7S1TFM7_9RHOD2.560e-7951.35Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A5J4YZD4_PORPP1.080e-7649.61TLDc domain-containing protein n=1 Tax=Porphyridiu... [more]
A0A7S2ZTI4_9RHOD3.690e-7649.22Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
A0A1X6PE37_PORUM2.250e-7452.67TLDc domain-containing protein (Fragment) n=1 Tax=... [more]
A0A448ZH24_9STRA1.360e-7351.84TLDc domain-containing protein n=2 Tax=Pseudo-nitz... [more]
A0A7S0DY99_9CRYP2.030e-7351.15Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1175contigA-nodosum_M_contig1175:146313..151184 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LBZ9
PFAMsTLD
Model size1107
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons7
Evalue3.8e-142
EggNOG OGs2BGQI@1|root,2S19X@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-20_003910.1
DescriptionTLD
Cds size942
COG categoryS
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1175.22.3prot_A-nodosum_M_contig1175.22.3Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1175 146412..151118 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866587.309628-UTR-A-nodosum_M_contig1175:146312..1464111680866587.309628-UTR-A-nodosum_M_contig1175:146312..146411Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1175 146313..146411 -
1680866587.5167825-UTR-A-nodosum_M_contig1175:151118..1511841680866587.5167825-UTR-A-nodosum_M_contig1175:151118..151184Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1175 151119..151184 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866587.3245654-CDS-A-nodosum_M_contig1175:146411..1465681680866587.3245654-CDS-A-nodosum_M_contig1175:146411..146568Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1175 146412..146568 -
1680866587.4506893-CDS-A-nodosum_M_contig1175:147079..1472011680866587.4506893-CDS-A-nodosum_M_contig1175:147079..147201Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1175 147080..147201 -
1680866587.463176-CDS-A-nodosum_M_contig1175:147468..1475801680866587.463176-CDS-A-nodosum_M_contig1175:147468..147580Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1175 147469..147580 -
1680866587.4788258-CDS-A-nodosum_M_contig1175:147942..1480751680866587.4788258-CDS-A-nodosum_M_contig1175:147942..148075Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1175 147943..148075 -
1680866587.488359-CDS-A-nodosum_M_contig1175:148611..1487781680866587.488359-CDS-A-nodosum_M_contig1175:148611..148778Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1175 148612..148778 -
1680866587.4973938-CDS-A-nodosum_M_contig1175:150575..1507161680866587.4973938-CDS-A-nodosum_M_contig1175:150575..150716Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1175 150576..150716 -
1680866587.508508-CDS-A-nodosum_M_contig1175:151008..1511181680866587.508508-CDS-A-nodosum_M_contig1175:151008..151118Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1175 151009..151118 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1175.22.3

>prot_A-nodosum_M_contig1175.22.3 ID=prot_A-nodosum_M_contig1175.22.3|Name=mRNA_A-nodosum_M_contig1175.22.3|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=314bp
MRVAGVITFALCVLLQLQDTASFTASWSPHGSYSRRRVELDDVMTVFEGK
YCGGARGHVRKELRAKRDVEEEQESQDIVEKLFGMFFGQKEDAPANLKRM
TIESFPDQYPAEKVLQADPVPGDSKDVAVIRPLLKQTELESRKLKLAFDA
KRNGWKAAAFHKGVDFKGPGIVVAKTKGGAVVGGYNPKGWAGYGEYRPGI
SAFLFTWRDGDTSKRAVKLRKIGGAGLAVWDRPECGPLFGSEGFGVGLQQ
GSERLGRSKLGSYYERLPGGVNSIFSPGDSGGMAELVDLRVYVGVYEKGE
TIPFDDAIPLSIT*
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mRNA from alignment at A-nodosum_M_contig1175:146313..151184-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1175.22.3 ID=mRNA_A-nodosum_M_contig1175.22.3|Name=mRNA_A-nodosum_M_contig1175.22.3|organism=Ascophyllum nodosum dioecious|type=mRNA|length=4872bp|location=Sequence derived from alignment at A-nodosum_M_contig1175:146313..151184- (Ascophyllum nodosum dioecious)
ATCGTTGTACTTGTATAGACAGTCAGTACGCCATTTTCACTCGCAGATTT GCCTCTCGTCGAGGCCATGAGGGTAGCCGGAGTGATAACCTTCGCCCTAT GTGTTCTCCTTCAGCTTCAGGACACTGCCTCATTCACGGCTTCCTGGTCA CCGCATGGGTCATACAGCAGAAGAAGGTACGCGAAAGAAAAGGACAGTAC GTAGCAAAAACGTCGCAAATGCTGTACTTCTAACCCTATGGAAGAAACAT GTTTCATGAGCTTCTCGTTTCGCCCGAACTGACAGTAGCCCACATCAAAG CATTTTTCCCGAGCGCGGTGAAGGGAGGTGAGCCCAAACGCAATCAACAC GGACGTGTTGTCATTTACATAGGTATCCCTGCCCGATAAATCCATCGAAG CCCATTCTCTTTGGCGTCGCTCCAAACTCAAGCGTCTAGACGAACATGTG AAATGTCGAATCTCCCAGGGTAGAGCTAGATGACGTCATGACCGTTTTTG AAGGCAAATATTGCGGAGGCGCCCGTGGCCACGTGAGGAAAGAGCTGAGA GCGAAAAGAGATGTGGAAGAAGAGCAAGAGTCACAGGACATCGTCGAAAA GCTGTTCGGGTGAGTCCGAACTTCGTGGGCAACAGGAAGCTTTGCCTCTT TCAAATGACATAGGCCTATACAAAACTCCCTGTTGTGCCTCCGTTTGGCA GAGGTCAAAAGCAAAGTTTTGAGTTTCCTGCGAGCCCCTTGAAAAGCCCG ACATACGATATTATACGGAGTGTAATAGTATCTCGCAAACCCTCAGCCCT CAAACGTCAGCTTGTGCAGTTCAGACCCGCCTTTTTGACCTTAAAACCAA GGCGGAAGCTTTACAGCCCGCACCGGGAAGTGCGTAATCGCCTCGGGCTG TAAATGTGTACCAAAGTAATAATAGACTATGTTGTACTGGAATATTATTA ATAGAGCGGATCAGGTATCTATGTAGTATGGTGACACATAAAGCAAGAGT ATGGATCAATCGGGTAAGGTTGCCAATCCTGCACGTGGTCAGCTGAACAG GGAAAATTAATATTTCCCTGTCCGCGTTCGCGCCTGAGAATTTGGTCTCG CGAGACGAGTTCGGCAGTCCCGTCCCGTGCCAGCCTGCTTATCTCCATAC TCAGGCTGAATCTGGTGCTTACTTACGGGATTCCTCCCGAGTTCCGCGGC GGCGTCCATTTATTAATTTCAAACCGCCACACGCCGTCGGGTCAGTCCCG AGTTTATCGGATCACGGAATTGCGTCCCGATGGCGTTCACTGTCGAGGGT CCGCCCAGTAAACCTCAAGGTAGTTCCGAACGAGTGTTGCCTCGGCAGGT CACCATGGACCAATTAATATGTGTGTGTGTTTGTGTTTTCTTCCCATTCA TTCTGGACATCAAGTTGGTTGGACGTACTAGCCGGGGTCACACAGGAGGA AGGTCACACAGGATTTCTCATCCACCTTCTTTCTGCGGTGCGTGCCTTAA TTTTTCTCGCGAGATGCGCCTCTCTTTCCCACACCCAATATTTGTATGAA GTGGGCATCTATCAGGTAAAGGGTACTGACTGGTACTCGTACAGACGCCA CCGCGGAAATCGGGGGGACTAGATTCAGCCTGAGTGTGGAGAATGAGCAC GCTTACGCGGGACGGGACTATCGGACCCGTCTCGCGAGACTAAATTCTCA GGCGCGAACGCGGACAGGGAAATATTCATTTTCCCAGTTCAGCTGACCAC GAGCAGGATTGACAGCCTTACTTCCCCTTTTGATCATTAAAAAAAAAAAA AGTATACTCTGCTGCTGGATATGTGATGACCATACATACAGGTGGAGATT GCTTTATTAACCAGTGGTAATTGTAGTTGCCGGTAGCTCGAGTATGGATA CTGCACCACATGTGTTCCGTAGTTGTTTTTAAATGCATGAGAGCTGTGAG TAGTAGGCGAGGGCAGGGCAGATGGGTGATCCGGGGGAGCTGGAGTGTAA AATGTAGGCAACGAAGGTCGAGGAGCAGCACGAGGAGGGTGATTCTAGAA GAGCATGTACCGCGCAAGAGAGTAAAAAAATAGATTGAAACACAAATTAA GCAGTGTTTTCAAGACCCTTTTTAGTGTGTCCCTGTAGGGCATGCCTCGA AACACTTTAAAGCATAGAAACATGTTATCGGCTTCTCGTGTACTCTTCTC GACGGGACTGCCGCTTCACTCCGATTCCGTCTGCATGCCTGGGATTTGAT TCCTTGAAAGTACAGTAAAAAATGGGTTGTTGATGACGCTACGCCTGGAA CGTGTACGTCGACGTAGATCTCGGGCAAGGACCACGGTACTTGTGTCGTG TGGCCCCCCGTATTGACGCCCTCTCCGTCTCCACCACCAACGCCAACGAT TGTCAGCATGTTCTTCGGTCAGAAGGAAGACGCCCCGGCCAATCTCAAGC GCATGACGATCGAGTCCTTTCCCGACCAGTACCCTGCAGAGAAGGTGCTC CAGGCTGACCCCGTCCCTGGAGACTCCAAGGACGTGGCCGTCATTCGGCC GCTGCTCAAGCAAACCGAGCTAGGTACGTCCCGGGCACAGTACAGCACGA AACCGTAATGTTTGGAGAGCATGCTCCCCCGAGGAACCCACCCGCACTTT TATCTTGATTACAGGGTGCACTAGCGATCAAAAAAATATTAATCGGTATT GCCCTTGGCAAGACCTTTCCATTCCCGCGTTGTTTGACGGATCCTGACTC TGTAATAAAAAGGAAGAAAAGCGGGGACGGGGGATTTTCTTCCCCCGGGA GGGGAGGAGGGGGGGGGGGCGTTCTCTCTTCGCACTACGGTAATACTGTA ACTACGAAGTAAAAGCGGCTTTGGTCAAGCTTTGGGGCTCTGTACGTTCT CGCTTGAACCGCGTTCGCCTTCGAGCCCATCGTCTGCGGCCATCTACTGT TTCGCTTGGGAGTCTCTGGTTTCCTTCGAGGCCATGCGGAGGATGTACCC GTCGTGGAGTCGGGAGTGAAGAAGCAGCGGGTCGAACCTTCCGTGACTGT TCATACTTGCTGCTGCAACGGTCGCTGTTGGTGTTGTTTTCTGCCGCCTT ACCCCCAAGAGTCCCGAAAGCTTAAGCTGGCGTTTGATGCCAAGCGGAAT GGTTGGAAGGCAGCGGCGTTCCACAAGGGGGTAGACTTCAAGGGCCCCGG GATCGTGGTGGCGAAGACGAAGGGTGGAGCCGTTGTCGGAGGGTCAGTGA AAACAATTCGCGCGCTTCGCGAGTTTGGAACATCTACAAAAAAGTCGTCG CGTTGAGAAAGTCCAGGTACTCCGTAGATCGCAATCACAGCCGAGAGGTT TTATCATCCCGTTTTTGTTCGGGCATCGTAGACGCACGTCTTCTGTGGCG AATGAGCAGGCGTTTCTCTCTGCCTGGCGGGGCTGAAAGGACCATGGACA CTTCGAAGGTCTCTCCCCTCGTGTCGCGTTTGATGCCGCGTGGAGCGTTC GTCACTCTGCGGTGGTAGAGTTCAATGAACAACGCCCTTCGCTTCTCATC TCCCCCCGACCTTCGCTTCCCCTGTCCGCGGGGTGCGCACCCAACCGCTG ACAGTTACAACCCCAAGGGTTGGGCGGGATACGGCGAGTATCGCCCAGGG ATTTCGGCCTTTCTCTTCACCTGGCGAGATGGAGACACCTCGAAACGGGC CGTCAAACTCAGAAAGGTACTCAAACGATTACAAGTAGAGGGAGACGGTG TAGGGGTTGGGTTAGGGGGGGAAGGAGGGGAGGGACGGGGGAGATTCTCC TGCAGTACCCGCACACCTAAGCAACGGAAAACAAATGAACAAAACTGTAC CGTCACTTTTTGTTTTGTTTTTTGTTGAAATCATTAATAGAACAAATATA TTCGATGTCCGAGAATCATCATAACAACAGTGACCAAAATCCCCCTCCCC CATTCTCCTGTCCATTCCTAACTGGGGACGCAGATCGGGGGCGCCGGACT GGCCGTGTGGGATAGGCCAGAGTGTGGCCCCCTCTTCGGCTCTGAGGGGT TCGGGGTAGGGCTGCAGCAAGGATCAGAGCGACTGGGGAGAAGCAAGCTG GGCAGGTGCGTGCGTGCGTGTGTGTGTGAGGGCGTGGGGTCGCACGGTCT TGAGAATAGAATATATGACGAAAACGCCTTCGCCGCAGGTGTCGTGCGTG GAACTGAGTACAGGCATCTATCGATTTGGTATGGCATTTATATCAGTTGC TTGCTTGCGTCACAACATTCGCAGTAATTACGAGGGGTTGGTGCGGCCCC GCGTTTTCTGTATTTTTTCGGGGTAGGCGCAAGAGATAGTAATATAGAGC TATATACAGTGTATATATTATATTATGTATTATATATCGTTCTAATCATT CCCACTCGCCCCGAGGATGCTTCCACTCCATCCCTGCAACTCGAAAAAAA AATCGAAGTTTACGACTAATAACGAAGTACATCGGCGCGTAGAGCGCGGT GGTCGACGAAGAGTCAAGGCTGCACCAACAATACACATCACACGGTGTAG CTACCACTCTCATTGCGTGCCGCACCTCCCGAACGGTCCCGTCGCCCTGT TTTTCACCGCCTACAGCTACTACGAACGCCTACCGGGAGGAGTGAACAGC ATTTTCTCTCCTGGAGACAGCGGCGGAATGGCGGAGCTGGTGGATCTCAG GGTTTATGTAGGCGTTTACGAGAAGGGGGAAACGATCCCCTTCGACGACG CTATTCCACTCTCCATCACCTAGTTTTGGATGTTACTGTGCGGATAGTCA GAAGCTGCAGGGAGATGTTTTATGTGTATACGAGTTGTTCCTGTAGACGT TGTTTCTTGCATAGTTGGTCGC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1175:146313..151184-

>mRNA_A-nodosum_M_contig1175.22.3 ID=mRNA_A-nodosum_M_contig1175.22.3|Name=mRNA_A-nodosum_M_contig1175.22.3|organism=Ascophyllum nodosum dioecious|type=CDS|length=942bp|location=Sequence derived from alignment at A-nodosum_M_contig1175:146313..151184- (Ascophyllum nodosum dioecious)
ATGAGGGTAGCCGGAGTGATAACCTTCGCCCTATGTGTTCTCCTTCAGCT
TCAGGACACTGCCTCATTCACGGCTTCCTGGTCACCGCATGGGTCATACA
GCAGAAGAAGGGTAGAGCTAGATGACGTCATGACCGTTTTTGAAGGCAAA
TATTGCGGAGGCGCCCGTGGCCACGTGAGGAAAGAGCTGAGAGCGAAAAG
AGATGTGGAAGAAGAGCAAGAGTCACAGGACATCGTCGAAAAGCTGTTCG
GCATGTTCTTCGGTCAGAAGGAAGACGCCCCGGCCAATCTCAAGCGCATG
ACGATCGAGTCCTTTCCCGACCAGTACCCTGCAGAGAAGGTGCTCCAGGC
TGACCCCGTCCCTGGAGACTCCAAGGACGTGGCCGTCATTCGGCCGCTGC
TCAAGCAAACCGAGCTAGAGTCCCGAAAGCTTAAGCTGGCGTTTGATGCC
AAGCGGAATGGTTGGAAGGCAGCGGCGTTCCACAAGGGGGTAGACTTCAA
GGGCCCCGGGATCGTGGTGGCGAAGACGAAGGGTGGAGCCGTTGTCGGAG
GTTACAACCCCAAGGGTTGGGCGGGATACGGCGAGTATCGCCCAGGGATT
TCGGCCTTTCTCTTCACCTGGCGAGATGGAGACACCTCGAAACGGGCCGT
CAAACTCAGAAAGATCGGGGGCGCCGGACTGGCCGTGTGGGATAGGCCAG
AGTGTGGCCCCCTCTTCGGCTCTGAGGGGTTCGGGGTAGGGCTGCAGCAA
GGATCAGAGCGACTGGGGAGAAGCAAGCTGGGCAGCTACTACGAACGCCT
ACCGGGAGGAGTGAACAGCATTTTCTCTCCTGGAGACAGCGGCGGAATGG
CGGAGCTGGTGGATCTCAGGGTTTATGTAGGCGTTTACGAGAAGGGGGAA
ACGATCCCCTTCGACGACGCTATTCCACTCTCCATCACCTAG
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