mRNA_A-nodosum_M_contig1175.10.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1175.10.1
Unique NamemRNA_A-nodosum_M_contig1175.10.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1175.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1175contigA-nodosum_M_contig1175:97652..98084 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size433
Hectar predicted targeting categorysignal anchor
Exons1
Cds size300
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866584.2963133-UTR-A-nodosum_M_contig1175:97651..977841680866584.2963133-UTR-A-nodosum_M_contig1175:97651..97784Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1175 97652..97784 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866584.3069947-CDS-A-nodosum_M_contig1175:97784..980841680866584.3069947-CDS-A-nodosum_M_contig1175:97784..98084Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1175 97785..98084 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1175.10.1prot_A-nodosum_M_contig1175.10.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1175 97785..98084 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1175.10.1

>prot_A-nodosum_M_contig1175.10.1 ID=prot_A-nodosum_M_contig1175.10.1|Name=mRNA_A-nodosum_M_contig1175.10.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=100bp
MCWKGSFSLANAYLVLTTRRIFFDNRYFFIFYAFIFCLESLVAPILNPPF
THPLFSMLPYACSPLSGVCSPDTGKSSGRQQSVFPLVFVRSRGRHGAWWR
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mRNA from alignment at A-nodosum_M_contig1175:97652..98084+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1175.10.1 ID=mRNA_A-nodosum_M_contig1175.10.1|Name=mRNA_A-nodosum_M_contig1175.10.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=433bp|location=Sequence derived from alignment at A-nodosum_M_contig1175:97652..98084+ (Ascophyllum nodosum dioecious)
GTCTCTACTTGAAGAAAAAAGCTCGAAATAAGATTCTGTGCCCACCCTTA
TAGAGTGTTTTGTGTTGGTATTTTTGCTTAAGCATTGCAGCGATCTACAG
TATGTACCGTATGGCGAAACGCTTCGTGCAAAAATGTGTTGGAAGGGGAG
TTTCAGTCTAGCTAATGCCTACCTTGTACTTACGACTCGTCGGATTTTCT
TCGATAACCGTTACTTTTTTATCTTCTATGCATTTATTTTTTGTCTCGAG
TCCCTCGTCGCCCCAATACTGAATCCCCCTTTCACGCATCCGCTCTTCTC
GATGCTGCCGTACGCTTGCTCGCCCCTCTCCGGCGTTTGTTCCCCCGACA
CAGGTAAATCTAGCGGCCGACAGCAGTCCGTTTTCCCCTTGGTTTTCGTA
CGATCTCGAGGCAGACATGGAGCTTGGTGGCGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1175:97652..98084+

>mRNA_A-nodosum_M_contig1175.10.1 ID=mRNA_A-nodosum_M_contig1175.10.1|Name=mRNA_A-nodosum_M_contig1175.10.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=300bp|location=Sequence derived from alignment at A-nodosum_M_contig1175:97652..98084+ (Ascophyllum nodosum dioecious)
ATGTGTTGGAAGGGGAGTTTCAGTCTAGCTAATGCCTACCTTGTACTTAC
GACTCGTCGGATTTTCTTCGATAACCGTTACTTTTTTATCTTCTATGCAT
TTATTTTTTGTCTCGAGTCCCTCGTCGCCCCAATACTGAATCCCCCTTTC
ACGCATCCGCTCTTCTCGATGCTGCCGTACGCTTGCTCGCCCCTCTCCGG
CGTTTGTTCCCCCGACACAGGTAAATCTAGCGGCCGACAGCAGTCCGTTT
TCCCCTTGGTTTTCGTACGATCTCGAGGCAGACATGGAGCTTGGTGGCGA
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