mRNA_A-nodosum_M_contig1175.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1175.1.1
Unique NamemRNA_A-nodosum_M_contig1175.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig1175.1.1 vs. uniprot
Match: A0A6H5L5H7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5H7_9PHAE)

HSP 1 Score: 201 bits (511), Expect = 1.650e-56
Identity = 99/181 (54.70%), Postives = 128/181 (70.72%), Query Frame = 1
Query:    1 MTRQVTEWTAENEMSVGKQKCGIMVVNKPLSMLHQTPARWQIAGQLVPIVSEYTYLGLRFTADLDVPSMLSERVAKGKRLVDTLTPFLRTRVIPVPMKVAVVRGVAIPRLLFGAEVYGMNKAITEPMQVLLNQVWRMVGGMNRNPTVSTVAIWREMGTPPICAMAAARRARALQKCRKLNT 543
            M   ++ W AENEMS G  KCG+M +      L + P RW++AG+ +PIV  YTYLGL F   LDV  M+  ++A G++LV  +TP+L  R IPVP+KVAVVRGV +PRLLFGAEV+GM  +IT  +QV +N+ +RMV GM+   TVS+VA+WRE+  PPICA AAARRAR +QK  KL T
Sbjct:  772 MDDHISVWMAENEMSAGIHKCGVMAIGHGRRRLRERPDRWKLAGETLPIVESYTYLGLEFNRRLDVEVMMGNKLAAGEKLVTLMTPYLLCRQIPVPLKVAVVRGVILPRLLFGAEVFGMRTSITNRLQVYVNRAYRMVAGMSPKATVSSVALWRELEIPPICASAAARRARTMQKASKLKT 952          
BLAST of mRNA_A-nodosum_M_contig1175.1.1 vs. uniprot
Match: A0A3M2C3P5_9GAMM (Reverse transcriptase domain-containing protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3M2C3P5_9GAMM)

HSP 1 Score: 104 bits (259), Expect = 1.260e-22
Identity = 63/179 (35.20%), Postives = 95/179 (53.07%), Query Frame = 1
Query:   13 VTEWTAENEMSVGKQKCGIMVVNKPLSMLHQTPA-RWQIAGQLVPIVSEYTYLGLRFTADLDVPSMLSERVAKGKRLVDTLTPFLRTRVIPVPMKVAVVRGVAIPRLLFGAEVYGMNKAITEPMQVLL-NQVWRMVGGMNRNPTVSTVAIWREMGTPPICAMAAARRARALQKCRKLNT 543
            +T W  + EM  G  KC IM ++ P+S L      +W + GQ VP+V EY YLG      LD+   +  RV + K+ + +++PFL  R IP+ ++  V   +  P  L+GAE++G+ +  T P+  L  N + R+ G         T  + RE+  PP+ A+AAARR RA  K   L T
Sbjct:  971 ITHWADKWEMQFGVSKCAIMGIDMPISHLSSLREDQWTLQGQPVPLVEEYVYLGTLLHNSLDMKESIRYRVGRAKKALQSVSPFLSCRSIPLHIRSRVFMSMVCPVALYGAELWGLREDRTRPIHSLFANAIQRIAG-------TYTGTLARELRIPPVAALAAARRTRAFFKFPSLKT 1142          
BLAST of mRNA_A-nodosum_M_contig1175.1.1 vs. uniprot
Match: A0A0F9ZBM3_9MICR (Endonuclease-reverse transcriptase n=2 Tax=Nosema ceranae TaxID=40302 RepID=A0A0F9ZBM3_9MICR)

HSP 1 Score: 100 bits (249), Expect = 2.620e-21
Identity = 62/187 (33.16%), Postives = 101/187 (54.01%), Query Frame = 1
Query:   13 VTEWTAENEMSVGKQKCGIMVV----------------NKPLSMLHQTPARWQIAGQLVPIVSEYTYLGLRFTADLDVPSMLSERVAKGKRLVDTLTPFLRTRVIPVPMKVAVVRGVAIPRLLFGAEVYGMNKAITEPMQVLLNQVWRMVGGMNRNPTVSTVAIWREMGTPPICAMAAARRARALQK 525
            +T W+ ++EMSV   KCGIM +                NK   +  Q P  ++I G +VP VSEY YLG+RFT DL + SM+    +KG++ +  +   L  + +PV +K+  ++      L +GAEV+GM+    + +Q ++N+  R+V G  RN  +  +    E+G   +  +AA +RARA+ K
Sbjct:  518 LTSWSEKHEMSVNASKCGIMKIRATEDVIAGGPNFLQPNKKARVEQQEPEPFEIMGNVVPEVSEYIYLGIRFTPDLCLNSMMQHVESKGRKAIGAMYYLLSKKDMPVYVKILSIKVKLQSILTYGAEVWGMSTLRCKGIQRIMNEACRLVVGGGRNAAMDRIR--SELGIQSVANIAAVKRARAVAK 702          
BLAST of mRNA_A-nodosum_M_contig1175.1.1 vs. uniprot
Match: A0A0R0LX01_9MICR (RNA-directed DNA polymerase, Non LTR Retrotransposon n=1 Tax=Pseudoloma neurophilia TaxID=146866 RepID=A0A0R0LX01_9MICR)

HSP 1 Score: 93.2 bits (230), Expect = 8.090e-19
Identity = 53/172 (30.81%), Postives = 93/172 (54.07%), Query Frame = 1
Query:   10 QVTEWTAENEMSVGKQKCGIMVVNKPLSMLHQTPARWQIAGQLVPIVSEYTYLGLRFTADLDVPSMLSERVAKGKRLVDTLTPFLRTRVIPVPMKVAVVRGVAIPRLLFGAEVYGMNKAITEPMQVLLNQVWRMVGGMNRNPTVSTVAIWREMGTPPICAMAAARRARALQK 525
            ++ EW    +MS+   KCG++V         +   +  ++G  + ++S+YTYLGL  TADLD+ +++++R  K      +L PFL  R +P  ++  +VR V +P   +G E+YGM+ A   P+Q ++++  R + G + N      A + E+  P +    A  RARA+ K
Sbjct:  192 RIDEWCGRWKMSLNVSKCGVVVFGP------EDGVQLSVSGSEIAMLSQYTYLGLPMTADLDLEAIVADRKEKATSAYHSLRPFLLRRHVPAVIRAQIVRAVLVPIATYGCELYGMSSARLHPLQRVIDRAIRDILGCSSN--YCRKAAYEELRIPSMALRGAKLRARAITK 355          
BLAST of mRNA_A-nodosum_M_contig1175.1.1 vs. uniprot
Match: A0A1J5WU32_9MICR (Reverse transcriptase domain-containing protein n=2 Tax=Amphiamblys sp. WSBS2006 TaxID=1866961 RepID=A0A1J5WU32_9MICR)

HSP 1 Score: 88.2 bits (217), Expect = 4.620e-17
Identity = 59/178 (33.15%), Postives = 86/178 (48.31%), Query Frame = 1
Query:   10 QVTEWTAENEMSVGKQKCGIMVVNKPLSMLHQTPARWQIAGQLVPIVSEYTYLGLRFTADLDVPSMLSERVAKGKRLVDTLTPFLRTRVIPVPMKVAVVRGVAIPRLLFGAEVYGMNKAITEPMQVLLNQVWRMVGGMNRNPTVSTVAIWREMGTPPICAMAAARRARALQKCRKLNT 543
            Q+  W    EM +  +KCG+MV             R    G  +P    YTYLG+    +L   +M   R  KG   +  L   LR+  + +  K  +V+G+ +P +L+GAEVYG     T   QV++N+  RMV G     T    A+WR++G  P+ A AA+R+ RA  K   L T
Sbjct:  228 QIELWAGRWEMEINPKKCGVMVFGGDQGEKVGVTTR----GGTIPEPDSYTYLGVELDRNLSRKTMSERRRKKGLECLFMLEKNLRSPSLSIGHKTLLVKGILMPTMLYGAEVYGSIGKTTSGAQVVVNKALRMVAGNGGALT----AVWRDLGVIPVQAAAASRQRRAWLKFPTLRT 397          
BLAST of mRNA_A-nodosum_M_contig1175.1.1 vs. uniprot
Match: A0A1J5X0W1_9MICR (Uncharacterized protein (Fragment) n=1 Tax=Amphiamblys sp. WSBS2006 TaxID=1866961 RepID=A0A1J5X0W1_9MICR)

HSP 1 Score: 82.8 bits (203), Expect = 1.520e-16
Identity = 57/180 (31.67%), Postives = 89/180 (49.44%), Query Frame = 1
Query:   10 QVTEWTAENEMSVGKQKCGIMVVNKPLSMLHQTPARWQIAGQLVPI--VSEYTYLGLRFTADLDVPSMLSERVAKGKRLVDTLTPFLRTRVIPVPMKVAVVRGVAIPRLLFGAEVYGMNKAITEPMQVLLNQVWRMVGGMNRNPTVSTVAIWREMGTPPICAMAAARRARALQKCRKLNT 543
            QV  W ++ EM +   KCG+      LS       +  I  Q  PI  +  YTYLG+  T  L   +M   R  KG   +  L   LR+  +P+  K  ++RG+ +P + +GAE++G    +T+  Q ++N   +MV G N     +  A+ R++G  P+ A+AA R+ RA  K   L T
Sbjct:    9 QVELWASKWEMEINPAKCGV------LSFGTSAEVKVGIVTQQGPIPDLESYTYLGVEITKTLSRMAMAERRRKKGLECLFMLEKKLRSPSLPIGHKTLLIRGIVMPTVTYGAEIFGSTGVVTKGSQGVINLAMKMVAGRN----CALTAVRRDLGILPVQAIAAERQKRAWGKFPYLKT 178          
BLAST of mRNA_A-nodosum_M_contig1175.1.1 vs. uniprot
Match: A0A7S3PFX4_9STRA (Hypothetical protein n=2 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PFX4_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 3.310e-16
Identity = 45/113 (39.82%), Postives = 71/113 (62.83%), Query Frame = 1
Query:  205 MLSERVAKGKRLVDTLTPFLRTRVIPVPMKVAVVRGVAIPRLLFGAEVYGMNKAITEPMQVLLNQVWRMVGGMNRNPTVSTVAIWREMGTPPICAMAAARRARALQKCRKLNT 543
            M S  + KG++    + PFL    IP+ ++  ++  V + RLL+GAE+YGMNK++T   Q LL++  +++ G++    VS + +W E G PPI A+AA+RRAR  QK + L T
Sbjct:    1 MASACLKKGRQTQAAIRPFLGCLDIPLCIRRQILCSVMLSRLLYGAEIYGMNKSLTRHFQQLLDESLKIMLGVSPKMPVSKLVLWEEFGIPPIAALAASRRARVFQKAQNLRT 113          
BLAST of mRNA_A-nodosum_M_contig1175.1.1 vs. uniprot
Match: A0A1J5WUS4_9MICR (Reverse transcriptase domain-containing protein n=1 Tax=Amphiamblys sp. WSBS2006 TaxID=1866961 RepID=A0A1J5WUS4_9MICR)

HSP 1 Score: 84.7 bits (208), Expect = 8.130e-16
Identity = 57/178 (32.02%), Postives = 87/178 (48.88%), Query Frame = 1
Query:   10 QVTEWTAENEMSVGKQKCGIMVVNKPLSMLHQTPARWQIAGQLVPIVSEYTYLGLRFTADLDVPSMLSERVAKGKRLVDTLTPFLRTRVIPVPMKVAVVRGVAIPRLLFGAEVYGMNKAITEPMQVLLNQVWRMVGGMNRNPTVSTVAIWREMGTPPICAMAAARRARALQKCRKLNT 543
            QV  W    EM +  +KCG++          +      I    +P V  YTYLG+    +L   +++ +R  KG+  V  L   LR+  + +  K  +V+G+ IP +L+GAEVYG     T  MQ ++N+  +MV G       +  A+ R++G  PI A AA R+ RA  K   L T
Sbjct:  658 QVEMWARRWEMEINPKKCGVITFYGS----EEERVGIHIGEGPIPEVKSYTYLGVELDQNLTRKAVVEKRRKKGEECVFMLEKQLRSPSLTIGHKTLLVKGIVIPTMLYGAEVYGSTGEATRGMQTVVNKALKMVAGN----CCALTAVRRDLGMMPIQAAAAGRQERAWAKFPNLRT 827          
BLAST of mRNA_A-nodosum_M_contig1175.1.1 vs. uniprot
Match: A0A1J5WVJ6_9MICR (Reverse transcriptase domain-containing protein n=1 Tax=Amphiamblys sp. WSBS2006 TaxID=1866961 RepID=A0A1J5WVJ6_9MICR)

HSP 1 Score: 80.9 bits (198), Expect = 1.360e-14
Identity = 56/178 (31.46%), Postives = 85/178 (47.75%), Query Frame = 1
Query:   10 QVTEWTAENEMSVGKQKCGIMVVNKPLSMLHQTPARWQIAGQLVPIVSEYTYLGLRFTADLDVPSMLSERVAKGKRLVDTLTPFLRTRVIPVPMKVAVVRGVAIPRLLFGAEVYGMNKAITEPMQVLLNQVWRMVGGMNRNPTVSTVAIWREMGTPPICAMAAARRARALQKCRKLNT 543
            Q+  W    EM +  +KCG+MV             R    G  +P    YTYLG+    +L   +M   R  KG   +  L   LR+  + +  K  +V+G+ +P +L+GAEVYG     T   QV++N+  RM+ G     T    A+ R++G  P+ A AA+R+ RA  K   + T
Sbjct:  228 QIELWAGRWEMEINPKKCGVMVFGDDQGEKVGVTTR----GGTIPEPDSYTYLGVELDRNLSRKTMSERRRKKGLECLFMLEKNLRSPSLSIGHKTLLVKGILMPTVLYGAEVYGSIGKTTSGAQVVVNKAVRMIAGNGGALT----AVRRDLGVIPVQAAAASRQRRAWLKFPTVRT 397          
BLAST of mRNA_A-nodosum_M_contig1175.1.1 vs. uniprot
Match: A0A1J5WSE6_9MICR (Uncharacterized protein (Fragment) n=1 Tax=Amphiamblys sp. WSBS2006 TaxID=1866961 RepID=A0A1J5WSE6_9MICR)

HSP 1 Score: 70.9 bits (172), Expect = 9.080e-12
Identity = 51/170 (30.00%), Postives = 82/170 (48.24%), Query Frame = 1
Query:   40 MSVGKQKCGIMVVNKPLSMLHQTPARWQIAGQLVPI--VSEYTYLGLRFTADLDVPSMLSERVAKGKRLVDTLTPFLRTRVIPVPMKVAVVRGVAIPRLLFGAEVYGMNKAITEPMQVLLNQVWRMVGGMNRNPTVSTVAIWREMGTPPICAMAAARRARALQKCRKLNT 543
            M +   KCG+      LS       +  +  Q  PI  +  YTYLG+  T  L   +M   R  KG   +  L   LR+  +P+  K  ++RG+ +P + +GAE++G    +T+  Q ++N   +MV G N     +  A+ R++   P+ A+AA R+ RA  K   L T
Sbjct:    1 MEINPAKCGV------LSFGSSAEVKVGVVTQQGPIPDLESYTYLGVEMTKTLSRMAMAERRRKKGLECLLMLEKKLRSPSLPIGHKTLLIRGIVMPTVTYGAEIFGSTGVVTKGSQGVINLAMKMVAGGN----CALTAVRRDLVILPVQAIAAERQKRAWGKFPYLKT 160          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1175.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L5H7_9PHAE1.650e-5654.70Reverse transcriptase domain-containing protein n=... [more]
A0A3M2C3P5_9GAMM1.260e-2235.20Reverse transcriptase domain-containing protein n=... [more]
A0A0F9ZBM3_9MICR2.620e-2133.16Endonuclease-reverse transcriptase n=2 Tax=Nosema ... [more]
A0A0R0LX01_9MICR8.090e-1930.81RNA-directed DNA polymerase, Non LTR Retrotranspos... [more]
A0A1J5WU32_9MICR4.620e-1733.15Reverse transcriptase domain-containing protein n=... [more]
A0A1J5X0W1_9MICR1.520e-1631.67Uncharacterized protein (Fragment) n=1 Tax=Amphiam... [more]
A0A7S3PFX4_9STRA3.310e-1639.82Hypothetical protein n=2 Tax=Aplanochytrium stocch... [more]
A0A1J5WUS4_9MICR8.130e-1632.02Reverse transcriptase domain-containing protein n=... [more]
A0A1J5WVJ6_9MICR1.360e-1431.46Reverse transcriptase domain-containing protein n=... [more]
A0A1J5WSE6_9MICR9.080e-1230.00Uncharacterized protein (Fragment) n=1 Tax=Amphiam... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1175contigA-nodosum_M_contig1175:14600..15142 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog45157.CMT010CT
PFAMsDUF4283,Exo_endo_phos_2,RVT_1
Model size543
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.91e-13
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota
DescriptionRibonuclease H protein
Cds size543
COG categoryE
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866584.453533-CDS-A-nodosum_M_contig1175:14599..151421680866584.453533-CDS-A-nodosum_M_contig1175:14599..15142Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1175 14600..15142 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1175.1.1prot_A-nodosum_M_contig1175.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1175 14600..15142 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1175.1.1

>prot_A-nodosum_M_contig1175.1.1 ID=prot_A-nodosum_M_contig1175.1.1|Name=mRNA_A-nodosum_M_contig1175.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=181bp
MTRQVTEWTAENEMSVGKQKCGIMVVNKPLSMLHQTPARWQIAGQLVPIV
SEYTYLGLRFTADLDVPSMLSERVAKGKRLVDTLTPFLRTRVIPVPMKVA
VVRGVAIPRLLFGAEVYGMNKAITEPMQVLLNQVWRMVGGMNRNPTVSTV
AIWREMGTPPICAMAAARRARALQKCRKLNT
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mRNA from alignment at A-nodosum_M_contig1175:14600..15142+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1175.1.1 ID=mRNA_A-nodosum_M_contig1175.1.1|Name=mRNA_A-nodosum_M_contig1175.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=543bp|location=Sequence derived from alignment at A-nodosum_M_contig1175:14600..15142+ (Ascophyllum nodosum dioecious)
ATGACCAGACAGGTTACAGAATGGACGGCTGAGAATGAGATGAGTGTAGG GAAACAAAAATGCGGAATAATGGTTGTGAACAAGCCGCTCAGCATGCTCC ACCAAACCCCGGCCCGTTGGCAAATAGCGGGGCAACTTGTACCGATCGTC AGCGAGTATACGTACTTGGGGTTACGCTTCACGGCCGACCTCGATGTGCC ATCAATGCTGAGTGAAAGGGTTGCCAAAGGGAAGAGGTTGGTGGATACGC TAACACCGTTCTTGCGTACACGGGTGATTCCGGTACCAATGAAGGTGGCG GTGGTTAGAGGAGTGGCCATTCCGCGGCTGTTGTTTGGAGCTGAAGTCTA TGGCATGAATAAGGCCATCACTGAGCCCATGCAGGTCCTGCTAAACCAAG TTTGGCGGATGGTCGGGGGGATGAATCGCAATCCGACCGTCTCAACTGTT GCCATATGGAGAGAAATGGGAACGCCCCCTATATGTGCGATGGCGGCGGC GCGAAGGGCGCGGGCCCTGCAAAAGTGCCGTAAGCTGAACACA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1175:14600..15142+

>mRNA_A-nodosum_M_contig1175.1.1 ID=mRNA_A-nodosum_M_contig1175.1.1|Name=mRNA_A-nodosum_M_contig1175.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=543bp|location=Sequence derived from alignment at A-nodosum_M_contig1175:14600..15142+ (Ascophyllum nodosum dioecious)
ATGACCAGACAGGTTACAGAATGGACGGCTGAGAATGAGATGAGTGTAGG
GAAACAAAAATGCGGAATAATGGTTGTGAACAAGCCGCTCAGCATGCTCC
ACCAAACCCCGGCCCGTTGGCAAATAGCGGGGCAACTTGTACCGATCGTC
AGCGAGTATACGTACTTGGGGTTACGCTTCACGGCCGACCTCGATGTGCC
ATCAATGCTGAGTGAAAGGGTTGCCAAAGGGAAGAGGTTGGTGGATACGC
TAACACCGTTCTTGCGTACACGGGTGATTCCGGTACCAATGAAGGTGGCG
GTGGTTAGAGGAGTGGCCATTCCGCGGCTGTTGTTTGGAGCTGAAGTCTA
TGGCATGAATAAGGCCATCACTGAGCCCATGCAGGTCCTGCTAAACCAAG
TTTGGCGGATGGTCGGGGGGATGAATCGCAATCCGACCGTCTCAACTGTT
GCCATATGGAGAGAAATGGGAACGCCCCCTATATGTGCGATGGCGGCGGC
GCGAAGGGCGCGGGCCCTGCAAAAGTGCCGTAAGCTGAACACA
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