|
|
Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 1 |
| Start | 1 |
| Model size | 2332 |
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Cds size | 1191 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1680866581.934743-UTR-A-nodosum_M_contig1174:107568..107880 | 1680866581.934743-UTR-A-nodosum_M_contig1174:107568..107880 | Ascophyllum nodosum dioecious | UTR | A-nodosum_M_contig1174 107569..107880 + |
| 1680866582.06757-UTR-A-nodosum_M_contig1174:111994..112823 | 1680866582.06757-UTR-A-nodosum_M_contig1174:111994..112823 | Ascophyllum nodosum dioecious | UTR | A-nodosum_M_contig1174 111995..112823 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1680866582.032875-CDS-A-nodosum_M_contig1174:107880..107987 | 1680866582.032875-CDS-A-nodosum_M_contig1174:107880..107987 | Ascophyllum nodosum dioecious | CDS | A-nodosum_M_contig1174 107881..107987 + |
| 1680866582.0443132-CDS-A-nodosum_M_contig1174:108556..108677 | 1680866582.0443132-CDS-A-nodosum_M_contig1174:108556..108677 | Ascophyllum nodosum dioecious | CDS | A-nodosum_M_contig1174 108557..108677 + |
| 1680866582.0546772-CDS-A-nodosum_M_contig1174:111031..111994 | 1680866582.0546772-CDS-A-nodosum_M_contig1174:111031..111994 | Ascophyllum nodosum dioecious | CDS | A-nodosum_M_contig1174 111032..111994 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1174.3.1 >prot_A-nodosum_M_contig1174.3.1 ID=prot_A-nodosum_M_contig1174.3.1|Name=mRNA_A-nodosum_M_contig1174.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=397bp
MLGKALNVPPTTNNAQTLSPVAQRNSLNEVKTNTAMPPPPQQRQPPCGLV
LRGQRSDFRESSTGETRAAAPTTTTPPQRINSANMQQVYRRHERAVPITR
RGIQITMSKGYHVSSNLSDSGVNGDGGLRRSRSNGSYNSAATRSPLSLYG
DSVYHSFRVCGAPDCDLCTKDASGRWRAAFVVHESWKKQPQSSDPAGDGA
GGVDKPRRSLIPHACEHCRMPFIPKISAAPFASHEGKGESSALSESASGG
DELDVSESGSERQGVSGVGSPREGGVVILEGSLAGGSAGSSPLTSSVTVG
AGDRADPDTPCSPLEVASHRLSSASSSESQQSCISSTRSGSVGGMFGEDE
YESDSFCSGDCKMSYMLSTPMALRRRRKKAEMARAAAQAALAEPQM* back to topmRNA from alignment at A-nodosum_M_contig1174:107569..112823+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_A-nodosum_M_contig1174.3.1 ID=mRNA_A-nodosum_M_contig1174.3.1|Name=mRNA_A-nodosum_M_contig1174.3.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=5255bp|location=Sequence derived from alignment at A-nodosum_M_contig1174:107569..112823+ (Ascophyllum nodosum dioecious)
TTCAGAGGAAGACCCACCCCAACCCTAGTTCATTCTCAGTTTAATCACTA
TCCAGACGGTGACTCTCTATTCCACTGACACCGCGGTTCACGCTTCTTCT
GCTTCCTCGTCTCTGTATCTTGATCGGGAAAGCACACCCCACAGAACCGA
AGACAGCCATCAGGGTTCGCCGACAGCCTCGCTCGTAGCCTGTCGCACGC
CGGTAAAACTCACGCGTGGATCCTTTCGGCCCAAGGTGTTTGTTTAGTCG
GCGCGAAGCTAGGCCGCTGGAGAACGAAAGCAAAAAAACAACTTGGAAAA
AGAGTTAGAGGCATGCTTGGCAAAGCTCTAAACGTACCACCAACAACGAA
CAACGCCCAGACGCTGTCCCCAGTCGCGCAGCGCAATTCGTTGAACGAAG
TCAAGACCAACACTGCGATGTGAGTTCTTCGTGGGTTGGAGGCTAGCATC
GATTCCAGTTGGCCCTGTCTCCGTCGACGATCGCTTGGCGCTCAAATTTA
ATTTTCGAAATACCCGCGTATTTGGTTTACACCCCCCGTCGCCGGCGGTG
TCGGCGTGACCGGTTGCAGCCAGAGAAAGCTCAAACGAAAGCTCTTAAAC
GTTTCTACTTTAGCCACTTCCTTCCCCGGCGATGATGGATTTCGGTGGCC
GGGCTTTAGATTACCCTGTAGTCGAGGGAGGGGTACACACACACCGTTAT
AGCCTCGAGGTGCTTTTTTTTTGCGGGAGGAGCCGAGGCATCAGTCCGGT
GGCTTGTCACAAACCAGCTTGGGGAAGAAAAAAATGTATAGGAGTAGAAG
AGTCGGCTCTTTCGTAAATTCGATGACTCGGCCAAAATACCAACACAGAT
AAGAAGAGATTTCTGAAACCAGTCGGAATGGGGAGAGATTTCTCTTGGCT
AGCGCCGTCGACTCCATCGTTTGATCCCTGTTTTGACTCTTCAATTAACT
GCGCCAACCTCCTCCTTCCCTTTTGTCGACACGAGCAGGCCGCCGCCACC
CCAACAGCGTCAGCCACCTTGTGGCCTGGTCCTGCGCGGGCAGCGATCGG
ATTTTCGCGAATCATCGACCGGAGAAACTCGAGCTGCCGCGCCGACTACG
ACTACTCCTGTGAGATTTTTAGCAGCAGCACCAACTTGTACTTGTAGTCT
ATTCCCTCTATGCTCTATTATATAGAGTCGGAACACCGACATACAAAACA
TTTACAACAGTATATGGCAGACGAACTGTGCCAGGGCACCGAAAAAGCTC
TTGAAGTCCCGTTCTTTTGTAGTGATATTCGTAACATCAAAACTAGAAAC
TGCTGTTTTTCCTGTCACCTTTTAAATCTGTGCCGTACGGAGTATATGTT
CCAGGTATGTCGTACGTAGAAATCATTTAAAAGAAGCTTCCTGCAGTTGA
GCTCTGCCGGCGGGATGAATTTCAGAAGCACTTTTTTTTTTTTCCCCACT
GCTGGGTAGCCGGGGTAATGCACGCCCCGCAAACCTTCACACCTCATTCA
ACACCGACAGCTCCTGGTACAAACGCTTTGGTGCCGCTCTGGCTCATCAG
TACCGGTATCTGTTTTTATTTTTTGTAATTCTATCGCTCCACGTCGGAGC
AGCTGATACTGTTGATAAAAAAGGGGACAAGTCTATCTCTCTCTGTACAG
GAAGTACAGTCAGTGCCAGACCGCAGCTGCAGAACCTCAACCACCAACAG
GAAAAAATAGACCCGGTATTAATGCATACCAGGTATACACAGCAGTAGTT
TAAAGAAAAATCTGAATCTTGTCTTGTCTTGTTATTTATACAGCCTTGAC
TCGTAGCTTTCGTTGTTAACAGTACTTGTACTACTACAGAACAGCTCAGT
TGTACCTGCGTGTAACCTGCAGTTTGGTTTTCGACTAGGGGTCTTCCCCA
AAGTAAATGGCAAATGCAACTCCAAGTTCTGAAAAGCGGTAGGGGATTTA
GAATAAAATAATAAAAGAACTGGAAATAAGAGAAGAAAAATAGAAAAGCA
CCGGTAACCAGCCCTGGGCGTTGTGTTATTTTATTTTCTCATTTCCGTGG
AGCCATAGCAGCCGCTTTCAGCGCATTCGAAGCAAGCATTGAAGGAAAAC
GGCTTTGCGTAGAGAGTTTCTTACCTCTATACCAGTATATATATACGGCC
GTTCCGATATCTCGATCGACGAGCATCGGCGGTATTTCAACATGAAAAGC
CGCCACAAAAGCCCCGCGTTCGGAGTGATTCATTCCAATTTTATGATACG
TGCGAGCATTTCGGCTGAAAGTTGGTTGGTGAAATATTATTATTAGACGG
CTTATCTCGGAACGGCCGCTTGATTTTTTTTTTATGTTGGGCTTTTGGGG
GGGGACGGCGCTGTTCATATTGTAAATTGTTTTGTATTTTGTTTTTTCTA
ATGGCTGTAGGTATAAAGAAGCTGCATTTACTACATGTACGACAAAGAAC
TACAGTTTAGTACCTGTACATTTTGATTGTTTCAATGATCTGTACTTTAC
TGTTTGGCGTCTGTCTGCCTTTGACTGTAACTTGTTTGTCTTGCGTGTGT
GAGGGGTAAAAAAATATACTGAACATATATATTTTTTCCAAAGTTTCGTA
CCACTCAAAAAACAGCAGCGGACGACGGTTCCGTTCGCACGGGCGCATAA
TAAAAGGCCTCGCCAGAGAGGCAGCCGCCAACATTTTCTACCGACTCATT
TTGATGCCCGATGCCCGGTTACAGAATTCCCGTCATGTTGCCACTGATGC
ACGTTCGCCTAGCGGAGTGTCCGCATTGTGCCGAAAATCGAAAATCCCGT
CGTCGATTGTTGTGGCTAGAGAGAACACATATTACTGTGTATGTACTGCT
GTACTTTTTTTTTTAATGTAGCATTTGAATACTCGTGTGCATCTTAGATT
GCGGAATAATGTTGCTGTTAGGGACCAAAAAAACAAAGTATAACGAGTCA
ATTTTAAAGATACCTTAAATTCTCCGACGGTGTTCTTTCTTCTCTTGATC
CAATTATTAATACTATAATATCGATCAATAGAACAGACGAGAGATACTGC
AGTGCCGTTAGAAGCCAGCACTTTTGATGCCAATTTTTCTCACCCCGATA
CGATACCGGCGACTGCAGTTGTAATTCGCCTTCCATACTGCCTGAATTAC
TTGTACAAAGAGTTGGACTAAGTTGACACGCCCTCCTGAGGCGGCGGAGA
TATGGTGATTCCGTGTTCGGAGCAGCTCTGAGGTGCCACATACTGTTCTT
GACATGAACTTGATGACACGCATCCAATTACTCAATAACTCTACTGGCTA
CTGGTCCAACAAGTACTTATATACGACTGATGCACCAATCTAGTACGATA
CTTGTCTCTCCGCATTTCTCCTTTTTGTGTTCTACTTTCGGGTAATATGA
TATGCTCCGCTGCGCCCCCCGTCGTGTCTTCGATCCCCACTCGCCCATTC
CTGCCCCTGTCAGCCTCAACGCATCAACTCCGCGAACATGCAGCAAGTCT
ACCGCCGGCACGAAAGGGCGGTGCCCATAACGAGGCGGGGCATCCAGATC
ACAATGAGCAAGGGTTATCACGTCTCGAGCAACCTATCAGACTCGGGAGT
CAACGGAGATGGAGGCCTCCGCCGCAGCCGTAGCAACGGGAGCTACAACA
GCGCGGCCACGCGCAGCCCGCTCTCCCTCTACGGAGACAGCGTGTACCAC
TCCTTCAGAGTGTGCGGCGCCCCCGACTGTGATCTCTGTACGAAGGATGC
CAGCGGGCGTTGGCGGGCAGCGTTTGTCGTCCACGAGAGCTGGAAGAAGC
AGCCCCAAAGCTCGGACCCAGCAGGAGACGGAGCCGGGGGCGTGGACAAG
CCGCGGCGCAGCCTGATCCCGCACGCGTGCGAACACTGTCGCATGCCTTT
CATTCCCAAAATTTCCGCCGCCCCCTTTGCCAGCCACGAGGGAAAGGGAG
AGTCCAGCGCGCTGTCGGAGTCCGCGAGCGGAGGCGACGAGCTGGATGTT
TCCGAGAGCGGCAGCGAGAGGCAAGGCGTTTCCGGTGTCGGATCGCCGAG
AGAGGGAGGAGTTGTAATTCTGGAAGGCAGTTTGGCGGGGGGTAGTGCAG
GTTCATCGCCGCTAACATCCTCGGTCACCGTTGGCGCGGGAGACAGGGCG
GACCCGGACACACCATGTTCGCCTTTGGAGGTGGCGAGCCACCGGCTTTC
CTCGGCGTCATCGTCCGAGAGTCAGCAGAGCTGCATCAGCAGCACTAGGA
GCGGAAGCGTTGGCGGCATGTTTGGGGAAGACGAGTACGAATCGGACAGC
TTTTGCTCTGGCGACTGCAAGATGTCCTACATGCTCTCCACTCCGATGGC
GCTGAGGCGGCGGAGAAAAAAAGCGGAGATGGCTCGCGCCGCCGCCCAAG
CTGCTTTGGCGGAGCCCCAGATGTAGGAGGGAGAGGAAATGGGATGGAAG
GTCGGCTCTTGGAAGAGACGCGAGAGGGCGTCAGGCGGCTCGACAAGCCC
ACCCACGATTGTTGGCTTCATCTTCCTGGCGGTGGCGTGAGCTGAGGCAA
AGAGGAGCAGCACCGTGATCCCTGTGACACGATTAAGACGGTGGGCGTGG
AAGAATATTGGGACGGGATCAGATACCGGGAGTTTGGCGGGCGGTGAAAA
GGGGCGGGGGGGGTTATAGAGACTTTTGAACCGCAATTCATGTCACGATT
GCCGACCCTCGCGCTAGGAAGAAAATCACAGTCTCTTGAAGCGACGAACA
CAAAATATGCGGTTACCCACCATATCGCGATTTTGTTTGGTGTCTCGTAG
GCGTGGTGGTGACCCCCTCCTCCCTCTCAGGGGTACCCTCGCCCATATCC
CCTACCCCCGGCCGACTCTGTTGTGGGCTTTTCGGGCGAGCGCGCAGAAT
GGGTTGGAGTTAAACCGCAGACGTTCGAGACGTTAATGTTTTCGTGAGGT
GCTTTTGTGGTGGTTTGTCGGCGCGAAAAGAAAGTGCTCCAGCTTTCTGT
TTACGCCGACGTTGCACTATATAGAGAGGCGTTAATATTTTATGGTATTG
TGTCCCCTCCTGCTCCCCCCCCCCTATGAAAACCCAACATGTGGGGTGGG
GAGTCTCTGGGGCAAAGGGGGGTCACGATCCCGAGGCCTTTCGTGCGAGC
GATTGACAGCATTGCGCACGAGAGAGTGCGAGGAGGTTGGGAGGAAAGAC
ACTTGCGAATCTTTTCTTGTCTCGGGGACGTCCACTTGCCCTGCACTGTT
GCGGC back to topCoding sequence (CDS) from alignment at A-nodosum_M_contig1174:107569..112823+ >mRNA_A-nodosum_M_contig1174.3.1 ID=mRNA_A-nodosum_M_contig1174.3.1|Name=mRNA_A-nodosum_M_contig1174.3.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1191bp|location=Sequence derived from alignment at A-nodosum_M_contig1174:107569..112823+ (Ascophyllum nodosum dioecious)
ATGCTTGGCAAAGCTCTAAACGTACCACCAACAACGAACAACGCCCAGAC
GCTGTCCCCAGTCGCGCAGCGCAATTCGTTGAACGAAGTCAAGACCAACA
CTGCGATGCCGCCGCCACCCCAACAGCGTCAGCCACCTTGTGGCCTGGTC
CTGCGCGGGCAGCGATCGGATTTTCGCGAATCATCGACCGGAGAAACTCG
AGCTGCCGCGCCGACTACGACTACTCCTCCTCAACGCATCAACTCCGCGA
ACATGCAGCAAGTCTACCGCCGGCACGAAAGGGCGGTGCCCATAACGAGG
CGGGGCATCCAGATCACAATGAGCAAGGGTTATCACGTCTCGAGCAACCT
ATCAGACTCGGGAGTCAACGGAGATGGAGGCCTCCGCCGCAGCCGTAGCA
ACGGGAGCTACAACAGCGCGGCCACGCGCAGCCCGCTCTCCCTCTACGGA
GACAGCGTGTACCACTCCTTCAGAGTGTGCGGCGCCCCCGACTGTGATCT
CTGTACGAAGGATGCCAGCGGGCGTTGGCGGGCAGCGTTTGTCGTCCACG
AGAGCTGGAAGAAGCAGCCCCAAAGCTCGGACCCAGCAGGAGACGGAGCC
GGGGGCGTGGACAAGCCGCGGCGCAGCCTGATCCCGCACGCGTGCGAACA
CTGTCGCATGCCTTTCATTCCCAAAATTTCCGCCGCCCCCTTTGCCAGCC
ACGAGGGAAAGGGAGAGTCCAGCGCGCTGTCGGAGTCCGCGAGCGGAGGC
GACGAGCTGGATGTTTCCGAGAGCGGCAGCGAGAGGCAAGGCGTTTCCGG
TGTCGGATCGCCGAGAGAGGGAGGAGTTGTAATTCTGGAAGGCAGTTTGG
CGGGGGGTAGTGCAGGTTCATCGCCGCTAACATCCTCGGTCACCGTTGGC
GCGGGAGACAGGGCGGACCCGGACACACCATGTTCGCCTTTGGAGGTGGC
GAGCCACCGGCTTTCCTCGGCGTCATCGTCCGAGAGTCAGCAGAGCTGCA
TCAGCAGCACTAGGAGCGGAAGCGTTGGCGGCATGTTTGGGGAAGACGAG
TACGAATCGGACAGCTTTTGCTCTGGCGACTGCAAGATGTCCTACATGCT
CTCCACTCCGATGGCGCTGAGGCGGCGGAGAAAAAAAGCGGAGATGGCTC
GCGCCGCCGCCCAAGCTGCTTTGGCGGAGCCCCAGATGTAG back to top
|