mRNA_A-nodosum_M_contig1174.21.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1174.21.1
Unique NamemRNA_A-nodosum_M_contig1174.21.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1174.21.1 vs. uniprot
Match: A0A6H5KX18_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX18_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 1.400e-29
Identity = 99/272 (36.40%), Postives = 131/272 (48.16%), Query Frame = 1 
Query:  394 GEGSGNNSSDNSQGTIGSMIVTVEPPLRLVLGAFVEEGKMKGGAEGVREWGYWEGEFGAQELAAHRRSLGWEGHTLESLRDCFVAAIRETQ---PRETHP-----LATAEKNASFSAHAPLPASAVNSTHTRGDSPLGLQQRSSDSXXXXXXXXXXXXXPQQRAPELSESVEPGRASTVDLHYADPDIIGSWGVKLVQGGLNEGLVSSMLRCMTAAASPRRLTEDVEPASPXXXXXXXXXXXXXXXGPLGFPKHPRQRGPATGARLVGASRS 1185
            G  S + SS +S   +GS++VT+EPP RLVLGA ++ G  +G       W YWEGEFG  ELA+HR SLGW+GH+LE+L DCF  A+  T+   P E  P     LA A+++          A  V +  T  + P        DS    XXX                        T+DLHYA   I+GSW V  VQ G++  L+ SM R + AA   R+L +  +P +                G    PK  R+R  ATGA+L GAS S
Sbjct:   50 GNASDSGSSSSSNPVVGSVVVTLEPPNRLVLGALLDRGLGQG-------WEYWEGEFGPLELASHRDSLGWDGHSLEALADCFAGAVEATKLPLPEENRPCSEGALAVADEHQQRPPEFSSTAGVVETDRTGEEEP--------DSGVGGXXX-------------XXXXXXXSATGTLDLHYARAGIVGSWEVSRVQTGVSVALMHSMHRSIRAACG-RQLADTAKPPASSSGSADAGLSRAKASG---APKFKRKRVAATGAKLAGASPS 289
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BLAST of mRNA_A-nodosum_M_contig1174.21.1 vs. uniprot
Match: D7FXQ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXQ2_ECTSI)

HSP 1 Score: 121 bits (303), Expect = 5.500e-27
Identity = 93/266 (34.96%), Postives = 127/266 (47.74%), Query Frame = 1 
Query:  400 GSGNNSSDNSQGT---IGSMIVTVEPPLRLVLGAFVEEGKMKGGAEGVREWGYWEGEFGAQELAAHRRSLGWEGHTLESLRDCFVAAIRETQ---PRETHPLATAEKNASFSAHAPLPASAVNSTHTRGDSPLGLQQRSSDSXXXXXXXXXXXXXPQQRAPELSESVEPGRAS-TVDLHYADPDIIGSWGVKLVQGGLNEGLVSSMLRCMTAAASPRRLTEDVE-PASPXXXXXXXXXXXXXXXGPLGFPKHPRQRGPATGARLVG 1173
            G+GN S   S G+   +GS+  T+EPP RLVLGAF++ G         + W YWEGEFG  ELA+HR SLGW+GH+LE+L DCF  A+  T+   P E  P +     A+   H   P    ++         G ++  S                        +  + G A+ T+DLHYA   I+GSW V  VQ G++  L+ SM R + +A   R+L +  E PAS                   G PK  R+R  ATGA+L G
Sbjct:   48 GNGNASDSGSSGSSPVVGSVAATLEPPNRLVLGAFLDRGL-------GQAWEYWEGEFGPSELASHRDSLGWDGHSLEALADCFACAVEATKLPPPEENRPCSEGAL-AAADEHQQRPPEFSSTAGVVETDRKGEEEPESGGVGGVGCG--------------DDDGDGGSATGTLDLHYARAGIVGSWEVSRVQTGVSAALMHSMHRSIRSACG-RQLADTAEAPASSSGSADAGLSRAKAS----GAPKFKRKRVAATGAKLAG 286
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1174.21.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KX18_9PHAE1.400e-2936.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXQ2_ECTSI5.500e-2734.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1174contigA-nodosum_M_contig1174:207254..211219 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1786
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-28_001690.1
Cds size756
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1174.21.1prot_A-nodosum_M_contig1174.21.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1174 207701..210636 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866582.6571488-UTR-A-nodosum_M_contig1174:207253..2077001680866582.6571488-UTR-A-nodosum_M_contig1174:207253..207700Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1174 207254..207700 +
1680866583.0130918-UTR-A-nodosum_M_contig1174:210636..2112191680866583.0130918-UTR-A-nodosum_M_contig1174:210636..211219Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1174 210637..211219 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866582.6734793-CDS-A-nodosum_M_contig1174:207700..2078411680866582.6734793-CDS-A-nodosum_M_contig1174:207700..207841Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1174 207701..207841 +
1680866582.6840553-CDS-A-nodosum_M_contig1174:208553..2089571680866582.6840553-CDS-A-nodosum_M_contig1174:208553..208957Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1174 208554..208957 +
1680866582.983585-CDS-A-nodosum_M_contig1174:209514..2096641680866582.983585-CDS-A-nodosum_M_contig1174:209514..209664Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1174 209515..209664 +
1680866582.9996305-CDS-A-nodosum_M_contig1174:210575..2106361680866582.9996305-CDS-A-nodosum_M_contig1174:210575..210636Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1174 210576..210636 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1174.21.1

>prot_A-nodosum_M_contig1174.21.1 ID=prot_A-nodosum_M_contig1174.21.1|Name=mRNA_A-nodosum_M_contig1174.21.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=252bp
MIVTVEPPLRLVLGAFVEEGKMKGGAEGVREWGYWEGEFGAQELAAHRRS
LGWEGHTLESLRDCFVAAIRETQPRETHPLATAEKNASFSAHAPLPASAV
NSTHTRGDSPLGLQQRSSDSAPPKSSKAAADDDPQQRAPELSESVEPGRA
STVDLHYADPDIIGSWGVKLVQGGLNEGLVSSMLRCMTAAASPRRLTEDV
EPASPTRNAPPLPPRGKRRGGPLGFPKHPRQRGPATGARLVGASRSSTSS
S*
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mRNA from alignment at A-nodosum_M_contig1174:207254..211219+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1174.21.1 ID=mRNA_A-nodosum_M_contig1174.21.1|Name=mRNA_A-nodosum_M_contig1174.21.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3966bp|location=Sequence derived from alignment at A-nodosum_M_contig1174:207254..211219+ (Ascophyllum nodosum dioecious)
AAACGCTCTGAAGTCAAGAAAAAAAAAAAGGGCTCTATATCGATAAGAAC
GGCCCTAACTAGCAACTGACTGATGAGGACGGGTGCCACGTTCATCTATA
CACTGTACCCGATACAAAAACCGTGGAAGTAGGGCTGGACAATATCGAGG
GGGGCTCTTGTCTGAATTTATTTGTGTTTTTCTTTTTAATTGCTTTGTAA
GGGTGGATAATACAGCATGCGTGACCTCTCGCGAAAAAAACGCATAATAT
TATACGTGAAAATTGAAACAACGGAAGAAGAAAAAATGTGCCAAAATAAA
ATGTAGAATTTGCAACCACCCGCGTTTTCAAGAAATTGCGCAACAAAACA
ACGAAGATTTCATTTATTTTTTTTCTGTACGGACTCCCGGTGAGGTGAAG
GCTCGGGGAACAACAGCAGCGATAATAGCCAAGGGACGATCGGGAGCATG
ATAGTCACCGTCGAGCCTCCCCTTAGGCTGGTGCTAGGTGCTTTTGTCGA
GGAGGGGAAAATGAAGGGGGGTGCGGAAGGCGTCCGCGAATGGGGCTACT
GGGAAGGAGAGTTCGGCGCTCAAGAGCTGGCGGCGCATGTGAGTATTGCC
AGGCGCGGGGAGATCCCACTGCCCCCCCCCTCCCTCGACCCGAACAACCT
TCGATTTGGTTTTTGAGTGTTAAATCCATCATTGTGTCAAACTATGCGGC
GCTGGAATCGTCTCCCTAAGAAATATGTAATAGCTCTTGTCTTAAAATTA
CGCCCAACTCCCGTGTCTGCAGTCAACATCCAGTAAAGTAGAGGGTGAGT
GGCGGGGGGGGGGAGGGGTGGTTCCCCGGTTGGGCATTTCGTCCGCGCTC
TGCAGCACTACAGCTTAAATGCACTCCACTGAAAACCATTAAGATACGTT
TGGACTGTGTGGGCAAGAGAAATCAGATCAGAAGGGCCGCGGTATGTTTC
CATCTGATAAAAAGTCATCATGCGCCGCAGAAAAAGATGGAGAAGCTGAC
CGCCGCCGTCTGGAGACAAGTGAACGAAAATCTGCACCGCTCGAAGCGGG
GGCTGTCTATCGCCTTCTTACGCCGCCTTGCAGCATGATGACAATGATGT
GGATGTCCCCCGCTCACAAATGCCTCAATTTTCAGAAGAGCGTCGTCACG
AGATAGCTTGGGAGGGGGAGGGGCGAGCGGGGAAGGTGTATCTACTTTGC
TCTGTGTTTATGGGGTGGGGCGCAGCAGACTGACTTGTTGGCGCTTGGCA
TCGGATGTCTCGCGTGCGCTGTACCCTCTGGTCGACGCGGTGTTCAACAG
AGACGGAGCCTGGGGTGGGAGGGGCACACCCTGGAGTCCCTCCGAGACTG
CTTTGTTGCCGCGATCCGGGAAACGCAACCACGGGAGACACATCCCCTGG
CCACCGCTGAGAAAAACGCCTCATTTTCCGCTCATGCCCCCCTCCCCGCG
TCGGCGGTAAACTCGACGCACACACGAGGCGACTCGCCGCTGGGCTTACA
GCAGAGATCCAGCGATTCCGCTCCGCCGAAATCGAGCAAAGCGGCTGCAG
ACGACGACCCGCAACAACGAGCCCCAGAGCTTTCCGAGAGCGTGGAGCCT
GGGAGAGCCAGCACCGTGGACCTCCACTACGCAGATCCGGACATCATCGG
GTCTTGGGGGGTCAAGCTGGTCCAGGGCGGCTTGAACGAAGGGCTTGTCT
CGAGGTATACACACTCCTACGAGGTACTCGTCCCGAGAGCAATGGAGCAC
CCATTACTCATTCCATATGCCCAACATTCAGCCGCTTCCAGTACATCGTT
TTTCGATTCATTTTCCATGTAGTACATTTAGTACACGTAGTGGTAGCCCT
CGTCGCCCGAGTGGTCTAGTAGGTAACCTGCACACCTGCTAGTGCGGAAG
TCGTGAGTTCGATTCTTACCAAAGTAGGATTTGTGTTCTTTCTTTCGTAA
CGGAAAGCGTGGGAACGTGAGTAAGTAAAATTCAAGCATTGGTTGACGAG
TTGTAAGAGTGCTGAACTTGCATCGCGATAAAAAAAATCGTAAGGCGTGA
ACCGGGGAGAGATGGGAAGATCCTTTGTGACCACAGGCAGGATGGTAATG
ATGAGGTCCATCGGCTATATGTGAGATTAAAGAAGAAAAAATACTACAAC
GTTTTTGACGAGAACTACGTACGGCAGTCTTTTTGACGCCGTCATCTCCT
CGCACTGCCCGGTCTCAACACGTGCTTGCCTGTCCTTGCCCACGCGTGTT
ACCTCTCTCAGCATGCTTAGGTGCATGACGGCGGCTGCGTCTCCTCGGCG
CTTGACAGAAGACGTGGAGCCTGCTTCTCCTACGCGAAATGCACCGCCTC
TACCGCCACGAGGGAAGCGACGCGGTGGACCCCTGGGGTTTCCAAAACAT
CCCAGGCAGAGGTGGGTTGGTAACGGCGTTTGCTGACCCCCCTCCGTCCC
CCACCTCTCTCAGGCGTATCGAGCGGTTTAAACGCCTCATCCTCCATCCT
TAAATAGTTATCCGTCGCGATCGCTCGCTGAACCGTTTCTCGTCGTCTGT
TGTTTTTTTTGGGAGGGTAGGCGCTAGTTTTGAACTCTCCTCCACGTGTA
GTAATATCAAAAAATAAAACGCAAACGCTTTTTTTTCTCCCCTGTGGATC
CTTTTTTAGGAAGATTTATTTGTTTATTTTTTATCGAACTGCAGTAGTAG
TTCGAAATGGTTATGTAGAAATTACAACAATCTTTGACTTGCCCTACTTG
TTTAAGTCCTGTACATGCCAAGTCTCTTTGCATAAGTATTTTTATATAGC
AAAAATAACTGCAACCCAAAAATCGAAATCACCAGGGTCTGGGCTCGTTG
TAATGGCAGACCTTGCGGTACTCTCAAGATTGACCGTACGGGCACTCGAT
GTTCTGTATGTACTGTGTCCGAGATAACGACCGTGAAGCGCGCCTGTCGC
CTCTCTTGACAGACTCTCATATTCCCCGAATCCCAACACAGATTCCCGAG
AGCTATAGCTCTACAATTCATCAACAAACCTCGTCTGATGACCGTTGAAC
TGTCTGCACGAGTATGCATATACCATAATGGCTCTATAAAAGCATGATTC
ACCGCGTCGCGCTGGCAGCAGCAGCAGCAGCGGCAACGTTTCCCTCGCCA
CAAGAAAATCCGACACACCCACAAGAGACAAAAAAACACTCATGTTCGCA
ACAAAAAATGTCTTTTAAAAAGATACTTTATGCCCGCCACGGCTCTTTTT
CTGCCTGCCCTTCGCACGGCCGATAAAAAACAAACAAAAAACACTCCAAA
TTGGAAAAACTGCTGTTCGAAGGGGACCGGCCACGGGTGCGCGGTTGGTC
GGCGCTTCTCGATCTTCGACTTCTTCATCCTAGGGCGCGTCCTGGCCTGC
TCGTATCATTTCTGGGCTTCTTCAGGCAAAGCAACGGAGGGGATTATACT
ATACGTCGGATGCGATCGGGTGATGAGGAGGGACACTTTTTTGTTTGTTG
TAAATCCGGGGGAACTGTGTCCCCCGGCCGATTTGATGTCTTCCTCAACG
ATAAAGGGTGCAGACCGAGGTTTTTAAAGAGTCTGCTGCCGCAGGACACG
TTTCAGGAGAAAGGCTCTCGGCCTGCGCTGATCTCTTTTCGCAATCATAC
CAGAGGAAGTGTACCTCTGGGGGACTAAAGGCCTTGATTTTTCTAGAGAG
TAGAAAGGGGACAGGGAGGGGACGGATGATTTCCCTCCCCGACGTATCTT
AACGCTCCAGAACAGGAGTGTAGATGCTGCTGCACTGTTTGTTTTTAGTA
ACAAAGTGGTCGGCCACCTTTGGACGCGAGCGTTTCTGATTGGTGGAAAA
GGTCTACGTTGTAGGGCTAACGATAAGGCTACACTATGTGCCTCAGCATG
AAAAAGGAGCGGGCGGAGATGGTGCCCCCGTTTTTTTGGTTGCTGAAAAT
ACAAATTGTTTTTTAC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1174:207254..211219+

>mRNA_A-nodosum_M_contig1174.21.1 ID=mRNA_A-nodosum_M_contig1174.21.1|Name=mRNA_A-nodosum_M_contig1174.21.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=756bp|location=Sequence derived from alignment at A-nodosum_M_contig1174:207254..211219+ (Ascophyllum nodosum dioecious)
ATGATAGTCACCGTCGAGCCTCCCCTTAGGCTGGTGCTAGGTGCTTTTGT
CGAGGAGGGGAAAATGAAGGGGGGTGCGGAAGGCGTCCGCGAATGGGGCT
ACTGGGAAGGAGAGTTCGGCGCTCAAGAGCTGGCGGCGCATAGACGGAGC
CTGGGGTGGGAGGGGCACACCCTGGAGTCCCTCCGAGACTGCTTTGTTGC
CGCGATCCGGGAAACGCAACCACGGGAGACACATCCCCTGGCCACCGCTG
AGAAAAACGCCTCATTTTCCGCTCATGCCCCCCTCCCCGCGTCGGCGGTA
AACTCGACGCACACACGAGGCGACTCGCCGCTGGGCTTACAGCAGAGATC
CAGCGATTCCGCTCCGCCGAAATCGAGCAAAGCGGCTGCAGACGACGACC
CGCAACAACGAGCCCCAGAGCTTTCCGAGAGCGTGGAGCCTGGGAGAGCC
AGCACCGTGGACCTCCACTACGCAGATCCGGACATCATCGGGTCTTGGGG
GGTCAAGCTGGTCCAGGGCGGCTTGAACGAAGGGCTTGTCTCGAGCATGC
TTAGGTGCATGACGGCGGCTGCGTCTCCTCGGCGCTTGACAGAAGACGTG
GAGCCTGCTTCTCCTACGCGAAATGCACCGCCTCTACCGCCACGAGGGAA
GCGACGCGGTGGACCCCTGGGGTTTCCAAAACATCCCAGGCAGAGGGGAC
CGGCCACGGGTGCGCGGTTGGTCGGCGCTTCTCGATCTTCGACTTCTTCA
TCCTAG
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