mRNA_A-nodosum_M_contig1172.9.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1172.9.1
Unique NamemRNA_A-nodosum_M_contig1172.9.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1172.9.1 vs. uniprot
Match: A0A6H5KIQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIQ0_9PHAE)

HSP 1 Score: 222 bits (566), Expect = 2.230e-68
Identity = 110/155 (70.97%), Postives = 126/155 (81.29%), Query Frame = 1 
Query:   52 ADAFSASYKTLPVHTTTLRSLGNFKGVILGG--VRKIHGISKPRAFHLVRDGDQQVKVGMKEFMHHEAFTGMTRDGVFTGQPHELFLGSVPRVEDAPPFVFKAVDEAILSKIQQRYDSVHTRLISLYPDDPAKRAHIIRQMNLSVQLLRENGTKE 510
            A AFSA+YKTLPVHTTTLR+LGNFKGV   G  VR IHGI+K RAF L++DG  QV VGMKE+MHHEA+TG+T DGVF G+PH+LF+G VP   DAPPF  K +D+A L KIQQRYDSVH RL +LYPDDPAKR   IR+MNLSVQLLRE GTK+
Sbjct:   13 AAAFSAAYKTLPVHTTTLRNLGNFKGVFPPGPVVRNIHGITKSRAFQLLKDGPSQVTVGMKEYMHHEAYTGLTGDGVFAGEPHDLFVGGVPDPADAPPFQLKDIDKATLDKIQQRYDSVHPRLEALYPDDPAKRNEYIREMNLSVQLLRERGTKD 167
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BLAST of mRNA_A-nodosum_M_contig1172.9.1 vs. uniprot
Match: D7FYY8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYY8_ECTSI)

HSP 1 Score: 160 bits (405), Expect = 8.670e-45
Identity = 75/116 (64.66%), Postives = 93/116 (80.17%), Query Frame = 1 
Query:  163 ISKPRAFHLVRDGDQQVKVGMKEFMHHEAFTGMTRDGVFTGQPHELFLGSVPRVEDAPPFVFKAVDEAILSKIQQRYDSVHTRLISLYPDDPAKRAHIIRQMNLSVQLLRENGTKE 510
            ++K RAF L++DG  QV VGMKEFMHHE + GMT DGVF G+PHE+F+G +P   DAPPF  KAV++  L KIQQRYDSV  RL +L+PDDPAKR+ I+R+MNLSV+LLRE GTK+
Sbjct:    1 MTKARAFQLLKDGPTQVTVGMKEFMHHEVYRGMTGDGVFAGKPHEVFVGGIPDAADAPPFELKAVEQDTLVKIQQRYDSVVPRLEALFPDDPAKRSEIVREMNLSVELLRETGTKD 116
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BLAST of mRNA_A-nodosum_M_contig1172.9.1 vs. uniprot
Match: A0A6H5JUU1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUU1_9PHAE)

HSP 1 Score: 137 bits (345), Expect = 2.130e-34
Identity = 70/172 (40.70%), Postives = 105/172 (61.05%), Query Frame = 1 
Query:    1 RLSTGCKHRNLFTREEQADAFSASYKTLPVHTTTLRSLGNFKGVILGGVRKIHGISKPRAFHLVRDGDQQVKVGMKEFMHHEAFTGMTRDGVFTGQ--PHELFLGSVPRVEDAPPFVFKAVDEAILSKIQQRYDSVHTRLISLYPDDPAKRAHIIRQMNLSVQLLRENGTKE 510
            R S G K +N+FTR   A+   ASY  +PV  +TLR+ GNFKG+++G V ++  I+  RAF + + GD +VKV +K+ MH   + G+  DG       PH+LF+GS PR++DAPP+  K V E ++ K++QRY + H RL + +P D         +   SV+LLR+ G +E
Sbjct:  272 RFSRGIKGKNIFTRTHLAEELRASYTEVPVFCSTLRNEGNFKGLLIGRVNRVPNITTYRAFRVEKGGDGRVKVRVKKHMHGAEWNGIHEDGNLNPDALPHDLFIGSPPRIQDAPPYKLKRVPEDVIQKVEQRYLASHERLAAAFPLDDGAVQRAKDEQKQSVRLLRQTGERE 443
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BLAST of mRNA_A-nodosum_M_contig1172.9.1 vs. uniprot
Match: A0A6H5KUF7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUF7_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 1.970e-26
Identity = 48/70 (68.57%), Postives = 55/70 (78.57%), Query Frame = 1 
Query:  223 MKEFMHHEAFTGMTRDGVFTGQPHELFLGSVPRVEDAPPFVFKAVDEAILSKIQQRYDSVHTRLISLYPD 432
            MKE+MHHEA+TG+T DGVF G+PHELF+G VP   DAP F  K +D+A L KIQQRYDSVH RL  LYPD
Sbjct:    1 MKEYMHHEAYTGLTGDGVFAGEPHELFVGGVPDPADAPLFQLKDIDKATLDKIQQRYDSVHPRLEVLYPD 70
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BLAST of mRNA_A-nodosum_M_contig1172.9.1 vs. uniprot
Match: A0A6H5KD34_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD34_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 3.720e-20
Identity = 42/60 (70.00%), Postives = 49/60 (81.67%), Query Frame = 1 
Query:  223 MKEFMHHEAFTGMTRDGVFTGQPHELFLGSVPRVEDAPPFVFKAVDEAILSKIQQRYDSV 402
            MKE+MHHEA+TG+T DGVF G+PHELF+G VP   DAPPF  K +D+A L KIQQRYDSV
Sbjct:    1 MKEYMHHEAYTGLTGDGVFAGEPHELFVGGVPDPADAPPFQLKDIDKATLDKIQQRYDSV 60
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1172.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KIQ0_9PHAE2.230e-6870.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYY8_ECTSI8.670e-4564.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JUU1_9PHAE2.130e-3440.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KUF7_9PHAE1.970e-2668.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KD34_9PHAE3.720e-2070.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1172contigA-nodosum_M_contig1172:27759..28602 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size513
Hectar predicted targeting categoryother localisation
Exons2
Cds size510
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866581.638117-CDS-A-nodosum_M_contig1172:27758..281911680866581.638117-CDS-A-nodosum_M_contig1172:27758..28191Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1172 27759..28191 +
1680866581.6486237-CDS-A-nodosum_M_contig1172:28523..286001680866581.6486237-CDS-A-nodosum_M_contig1172:28523..28600Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1172 28524..28600 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1172.9.1prot_A-nodosum_M_contig1172.9.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1172 27759..28600 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1172.9.1

>prot_A-nodosum_M_contig1172.9.1 ID=prot_A-nodosum_M_contig1172.9.1|Name=mRNA_A-nodosum_M_contig1172.9.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=170bp
RLSTGCKHRNLFTREEQADAFSASYKTLPVHTTTLRSLGNFKGVILGGVR
KIHGISKPRAFHLVRDGDQQVKVGMKEFMHHEAFTGMTRDGVFTGQPHEL
FLGSVPRVEDAPPFVFKAVDEAILSKIQQRYDSVHTRLISLYPDDPAKRA
HIIRQMNLSVQLLRENGTKE
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mRNA from alignment at A-nodosum_M_contig1172:27759..28602+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1172.9.1 ID=mRNA_A-nodosum_M_contig1172.9.1|Name=mRNA_A-nodosum_M_contig1172.9.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=844bp|location=Sequence derived from alignment at A-nodosum_M_contig1172:27759..28602+ (Ascophyllum nodosum dioecious)
AGATTGTCAACAGGCTGCAAGCATCGCAACCTCTTCACGAGGGAAGAGCA
AGCGGACGCCTTTTCAGCGTCTTACAAGACGCTGCCGGTCCATACTACCA
CCCTGCGAAGTCTAGGCAACTTCAAAGGCGTTATTCTCGGCGGCGTAAGG
AAAATTCACGGAATTTCCAAGCCGCGCGCTTTCCACCTGGTCAGAGACGG
CGACCAGCAGGTGAAGGTGGGCATGAAGGAGTTCATGCATCACGAGGCGT
TCACGGGCATGACACGAGATGGAGTTTTCACCGGACAGCCCCACGAGCTC
TTCCTTGGCAGCGTCCCAAGGGTAGAAGATGCGCCCCCGTTCGTCTTCAA
GGCGGTTGACGAGGCGATCCTCTCGAAGATTCAGCAACGCTACGACAGCG
TGCACACCAGGTTGATCTCGCTGTATCCCGATGGTGAGAGATGGTTCCGC
TCCTTCGCTGTAAAGTGCTTGCTGATTCGCTGAATGTAGGTAGGTAACCC
TAACCCTTGTCATTTCGCTGGTTGTCTGCGCGTTGACCTCCAATTGTTTT
GTGTTTTTTTCGCATGCATGCTCCCCATTCCCTACCGACCGCTGTTATAC
CACTGTAGCCAGAGATGCGGTTAGCATATACAGAACATGTGCCAATCTCG
ACTAAAGTAGGCATGTCCTTCCTTACCACCCGAGAGTCAATATCCTCCTG
CACGGGCATGTCGTTTTGCCCACTTACACCAATTTTGTTCTTCGTTTCCA
ATCGCTTCGGTGCAGACCCTGCTAAAAGAGCTCACATCATACGACAGATG
AACCTCTCCGTCCAACTTTTGCGTGAGAATGGAACGAAGGAGTG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1172:27759..28602+

>mRNA_A-nodosum_M_contig1172.9.1 ID=mRNA_A-nodosum_M_contig1172.9.1|Name=mRNA_A-nodosum_M_contig1172.9.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=510bp|location=Sequence derived from alignment at A-nodosum_M_contig1172:27759..28602+ (Ascophyllum nodosum dioecious)
AGATTGTCAACAGGCTGCAAGCATCGCAACCTCTTCACGAGGGAAGAGCA
AGCGGACGCCTTTTCAGCGTCTTACAAGACGCTGCCGGTCCATACTACCA
CCCTGCGAAGTCTAGGCAACTTCAAAGGCGTTATTCTCGGCGGCGTAAGG
AAAATTCACGGAATTTCCAAGCCGCGCGCTTTCCACCTGGTCAGAGACGG
CGACCAGCAGGTGAAGGTGGGCATGAAGGAGTTCATGCATCACGAGGCGT
TCACGGGCATGACACGAGATGGAGTTTTCACCGGACAGCCCCACGAGCTC
TTCCTTGGCAGCGTCCCAAGGGTAGAAGATGCGCCCCCGTTCGTCTTCAA
GGCGGTTGACGAGGCGATCCTCTCGAAGATTCAGCAACGCTACGACAGCG
TGCACACCAGGTTGATCTCGCTGTATCCCGATGACCCTGCTAAAAGAGCT
CACATCATACGACAGATGAACCTCTCCGTCCAACTTTTGCGTGAGAATGG
AACGAAGGAG
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