mRNA_A-nodosum_M_contig1171.66.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1171.66.1
Unique NamemRNA_A-nodosum_M_contig1171.66.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1171.66.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1171contigA-nodosum_M_contig1171:233401..239731 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FQG8
Model size2561
Max annot lvl2880.D7FQG8|-
Hectar predicted targeting categoryother localisation
Exons4
Evalue0.000225
EggNOG OGsCOG5147@1|root,KOG0048@2759|Eukaryota
DescriptionRNA polymerase II transcription regulator recruiting activity
Cds size654
COG categoryADK
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1171.66.1prot_A-nodosum_M_contig1171.66.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1171 233505..237928 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866581.4358072-UTR-A-nodosum_M_contig1171:233400..2335041680866581.4358072-UTR-A-nodosum_M_contig1171:233400..233504Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1171 233401..233504 +
1680866581.48683-UTR-A-nodosum_M_contig1171:237928..2397311680866581.48683-UTR-A-nodosum_M_contig1171:237928..239731Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1171 237929..239731 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866581.445628-CDS-A-nodosum_M_contig1171:233504..2335571680866581.445628-CDS-A-nodosum_M_contig1171:233504..233557Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1171 233505..233557 +
1680866581.45463-CDS-A-nodosum_M_contig1171:235242..2353841680866581.45463-CDS-A-nodosum_M_contig1171:235242..235384Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1171 235243..235384 +
1680866581.4670818-CDS-A-nodosum_M_contig1171:236617..2368151680866581.4670818-CDS-A-nodosum_M_contig1171:236617..236815Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1171 236618..236815 +
1680866581.4787955-CDS-A-nodosum_M_contig1171:237667..2379281680866581.4787955-CDS-A-nodosum_M_contig1171:237667..237928Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1171 237668..237928 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1171.66.1

>prot_A-nodosum_M_contig1171.66.1 ID=prot_A-nodosum_M_contig1171.66.1|Name=mRNA_A-nodosum_M_contig1171.66.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=218bp
MKRKMKETAFTGTAPSNGIGVAQAQAQARANALHVRTHTRAGARTELGSQ
TWHQNQGNQGGPSREDLGATNFQDFRGAPSTVPPGGSSCSSSAMGAMGVM
GATLTPSLAGRPCRRDYSDLASILMDSAPRENSVDAESDLVTLGGDPYSD
YSLSGTPHIMPYNSDPADEYWNPARASHSPDEDDKGGLSDLDGMAAVPPE
LEPFGPGIGDPCDPYWA*
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mRNA from alignment at A-nodosum_M_contig1171:233401..239731+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1171.66.1 ID=mRNA_A-nodosum_M_contig1171.66.1|Name=mRNA_A-nodosum_M_contig1171.66.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=6331bp|location=Sequence derived from alignment at A-nodosum_M_contig1171:233401..239731+ (Ascophyllum nodosum dioecious)
TCTCCGTCAGCAGCGTCGGCGCAGAATCCTCGGCGACGCTCCCAGAAGAC
ACGTCGGGCTTGTGCGGATCCGGCCTTTCTACGAGTACGACCATCAACGG
TAATATGAAGAGGAAGATGAAAGAGACCGCTTTTACTGGCACGGCACCGT
CAAACGGGTGAGCAGTCCCTTCACTGCCCGTTATTTTTATACATATTAAC
TATAAATAACAGTTATAAGAGTATTTTTTATTTCCCTCTCGCCGTTGTCT
TTCATAGGATCTATATATCCTCTCACAGGATATGGATCCTGCGAACGGTT
TTCTGGCCACCCTGGTGACGTATTCAAACGTATTCTAGTTGGTATATGAG
AGATACCGGGCCCTGAACATGTATAGTTAGCACTTTCAGGAGAGTATGGA
TCAACATCAACCGGGTACGGTTTGCCAATCCTGCTCGTGGTCAGCTGAAC
AGGAAAAACAGTTTTTTTCCTTGTCCCTGATCGCGCCTGAGAATTTGGTC
TCGCAAGACGGGTTTGGCCCTCCAGTCCCGCGTCAGCCTGCTCATTCTCC
ACACTCAGGCTGAATCTGATGCTTACTCGCGGGATTCCTCCCGCTTTCCG
AGACGGCGTTCACATAATATATAGCGTCAGCCGCCGTCGGGTTAGTCCCG
AGTTTATCGAGTCACGCGATTGCGTACAGATGGCGTTCACTACCGAGAGT
CCGCCAGCGCAGGGCCTGTAGTCCTCAAGGTAGTTCGAGTAACGGGTGCT
GCCTTTGCGTCACCATGGACCAATTTTTGAGCGCGTCTCTCTTTTCCCAC
ACCCGCTATTGGTATGTAGTGGTTATAGCATGTGTGCTACGGAAAGTGCC
AGAGGCAATGGACGTGGAAAAAAACGCTGACCGGTCGATGGCATGCAAAA
AGTTACTTGAACTTTATTAAGACAAGAGACAGGATTATTGTTCTCATTGT
TATTCAAGTACTGTTTTCCTTGACGTGAAAGAAGAAAACGATCGTTTGCC
TCCCCGAGGTCCATTGGACAAGGATACTATACTGTAACTAGTATAGTTAT
GTAAATGCTTTTTGGAAGGGTCATGCCTCGCCTGAATCACTTGCTACTTT
CAGAAGGGCTTCAAGGCTTCTTGCGTGTAGAACAGCTCCATCACTGGGGA
GAGCGACAGAGAAACGGGTTACGATGGGCGTACTGTCTCCCCGCCCTTCG
TCCGTGTCATTCCATTCATTCCATTCGTCCCATTCATTTCATAACGTCCT
GCGCCTTGTTTGACGTGTTCAAATCATGATTGTCTAATTACTTTCAACAT
GCCCACTTCATACCAATAGTGGGTGTGGGAAAGAGAGGCGAATATTAATT
GGTCCAAGGTGACCTGCCAAGGCAGCACTCGTTCGGAACTACCTTGAGGT
TTACTGGCCCTGAGCCGGCGGACTCTCGGCAGTGAACGCCATCGGTACGC
AATTGCGTGACCCGATAAAAGGGGCTGACCCGATGGCGTATGGCGGTTTT
AATAAATCGACACCGTCGCGGAACTCGGGAGGAATCCCGTAAGTAAGCAC
CAGATTCAGCCTGAGTATGGAGATGAGCAGGCTCACGCGGGACGGGACGG
CTCAACCCGTCTCGCGAGACTTAATTCTCAGGCACGTACGGGGACAGAGG
AATATTCATTTTCCCTGGTCAGCTGACCACGAGCAGGATTGGCAACCTTA
CCCGGTTGATCCATACTCTGCTATATGTGATGACCAGGCATACATACTGT
AGATATCTTAGTTTCATGATTGTTTAGTCATAGTCCCAAGCCTCTTCTTT
TCGTGACCGTTTCTGTGATGCACGGCTTTCCGATGGTTGCAGCATCGGCG
TCGCACAGGCACAGGCACAGGCTCGGGCTAATGCGTTACACGTTCGCACG
CACACACGCGCCGGGGCTAGGACGGAGCTGGGCTCGCAGACCTGGCACCA
AAATCAGGGCAATCAAGGAGGGCCGTCTCGAGAGGTGGGGATATAAAGTT
TAAACATGATATATAAGACGTCAAGCACTGTAACGTGTTACTGTTGTTTT
CTGCACCTGCAACTGTGTACGTTTGGTCTGATGATAAACGCATCGCAACG
CTGCGGCTGTGATTCGTAGGACGTGCGCGTACATTTAGCAAAAAGCCTTC
CTAGGGAACTATATTGTATTTATTTTGGTGTAGTGGCGAGTATCGCGCTT
GTGGGAAGAGCGCGAAAATCGCTAACCAAGGATTGACGATCCAGTCCTTC
TAGAGAAGAATCTTTTCGGCTTTGTTTCAGGTGCGGCGGGTTTTGGATTT
TTTTTTCGAGCCTAGTTTTGCTGTAACAGTTCGTTATGCCCCGAGGCAGA
TGAGATAGATGTGCTGTAACATAACAGTACACTTGGTGGAATGGAACAAG
GGACTGTCCTGTGTCTCGTATTGCCTTGTTCTGTGTCTCGTATACGCCAT
CGCAGTCGGGCGGAGGTGTGTTCGTTTCAGGGAGACGCAGTGAGACAGGC
TGTGCCGTTGTCGAGTGATCGTGATGTACAAACAACAGCACAAAAGAGAA
AACACAAATGCTTCTCCACGATGACAGGGTGCGCTGTCCTCTATCCATAA
GGGCTATGGGGTACTCGCACCATGGCGGTGATTGTAAACTACTATCGATA
GTACCTGGGTATTGATGGAAACAGGCCGAAAGGGGGCGCAAGAGAAGCTT
TTGCTGTTTTCATTGGATGGTTACTAATGGTTGCATTTGGCATTTGACCA
AGAACTAATAGCACTGCGGATGTGATGTATTAATAGTTGACTGAAGTTGA
GAAAAGATAAAGAAAGGGAGCGATTTGCCGGCTGAGGCGTGATGCCTATT
ATTAGTTGGCCGCATGCATCGTTCTTTGATGGTTGAACACCGTGGATTTG
TGAACCGTTCCACGTATTGTACATTTTGTGTTTATGTCCGTCGGAAGTGC
ATCGTACACCATACACTTGCTCCGTAAACCGTACACGCACTATGTAGTAT
GTAGTATACTAGTACTACAATATACAGTACAGTGCAGTACACCACACATA
ATGATTCGTGCACCATACACACACCATACAAATCACAAAACAGTGCCGTA
CATCACACACCATATACCGTATTCCACACAAACCCTACACCATGCGTCAT
ACGTCATTCACTAAGCCACGCAAACCACGCGTCGGCTGCGTGTCGCTCCG
ATTGTACTAATTTTCAGGACTTGGGCGCTACTAATTTTCAGGACTTTCGC
GGAGCTCCCAGCACCGTCCCCCCTGGTGGCTCGAGTTGTTCCTCATCCGC
CATGGGTGCCATGGGTGTCATGGGAGCTACCCTAACCCCTTCCCTGGCCG
GCAGGCCTTGTCGGAGGGACTATTCAGACCTAGCTTCGATCCTCATGGAT
AGCGCCCCGCGGGAGGTACGTAACACGCTAATGATATACGTATCCCCCTG
CTCTTAGACACGTGACACCTGGTATTATCATTCGGCACAGTACTTAATAC
TCGTATGTCTTGTGGCCGTTTCTTATGTCTTACGGCGACTTGTGAAAAAT
TGAAACTGGCATGATTTTCCCCGGTTCTATTCCCCATCGATGGCATGCTC
CCTGCCGCCCCTTGACGAAGAATGCGCAGTTGAGGGTTTGGCATTTTAAA
ACGCGAACTGGCCGGGGGACGAAAGCATAGACATGAAGGGGTTGATGTAA
AGTAGAGTGCTATCAATCACAAAGTTCAAAGAGTTGGGGTCGCTGACCCA
GCTTGGATGTAGATGCTGTCAGCCCAGTGCCTCAGGGGGGACCACGGAAG
CGGTAGCCCAATCGATGCAGATGAGAAAACATCGTACGCAAAGTCGATCG
GATCGGATCGGATCCAATCGATGCCGTCAAAAAATTTGTCATTAGACTAT
TCGTAGTCTCATACGGGACGTTGGCGTATGGCGTAGACATTATTGACAAT
GTGGGGTGAGGCCGTGATGGTGGGCTTGGGGTCGTTCTTTTTCTAACCTG
GTTGATATGCTCACGCTATTGCCATGCTATTGCTAGATATTAGTAGATAG
TACCAGTATGATACGTGGTTCGAAGGAAAATACAAGAGGATCGAAGCGAC
AAAAGATCTAAGTTACGATTAGCTTTATGGGACGTTCTTCGTGCAAGTAC
CTACACACTCAAGGTTCCGCCTCCGAGCCGTTGCGAGTTTTCAGCGCGCC
CTTATCTGAGAAAGCCCCTTGCTCTCGATTCCCATGTCGACCTCTCAACA
ACCCGCCTGTGGCGCAGAATTCGGTCGACGCTGAGAGCGATCTGGTGACG
CTTGGAGGCGACCCCTACAGCGACTATTCGCTTTCCGGCACACCGCACAT
CATGCCCTACAACTCGGACCCAGCTGACGAATATTGGAACCCGGCTCGGG
CAAGTCATTCCCCCGACGAGGATGATAAGGGAGGTCTCAGTGACCTGGAT
GGCATGGCGGCTGTTCCCCCAGAACTGGAACCATTTGGGCCTGGCATAGG
AGATCCATGCGACCCGTACTGGGCCTAGTGACGACAACGACCGTTGCTTC
TTTATCTTTTTGAATCCTATGTAACTAGTTCCCGATTTGGCCTTGGATTT
ACCTCCCCACCTCGAGGGTCCCGGCCGAGTATTTTTGGTGTATACTACAC
GAGTTCGACGAGTGTGTCGACGAGCGAGTCTGAGGCGTAAGCGCCCCCGT
TTTCCCTCGCGTGTAGGATATACCTGCGGTATACGTACGGTATGTATAGG
GTGTAATGTATGCGGAAACCTGTTAGGTCCAGATGGCCCTGATGCCCTGA
CAGCCGGGCATTTTTACTTTGACCAGGAGTAGTCGCTGTGAGCGACCCCT
ATAGCCGTCGTCAGGAGTGGTCACTATGAGTGATCACCATACGTACGGGA
CGCGTTCGTCCCCAATACCTAGGAATACCTAGCTGCACTCTAGTGCGCTG
GGTTTGTGCTGTCTATTGGTCCGCGTGAATACGCATGTATATACCATAAT
GTATTGTTCCATATCTTGCGGTGTCTTCTCTTTTTTCTATATTTTCCATC
TTTTCGTACCACGAGCCTGATTTTTCCGTGTCCGCTCCTCTCTTTTATAA
AAAACGATCGGTGGCACAATAATTGAGGTATCATTACTAATTAAGGGTCG
ACGTCCAGTGACACGTTTGCGGAATCGATGGTTATTGGGATATCTATGTT
TCGGTGGAAAGAGTGCTTCAGGCATTGCATTACTGTAATAGCATACGCGG
CCAGGAGGCCGTGAAGAGCAACCTACTACTATACTGTGTAATCTACAGTG
CCTTGTAAAACACGCTTCCAGATCTGGAAACCTCTGTTCGATTTTTTAGT
AACGTTTTTATTTGTGTTTGTTCAAGGGAGGTTAAGAGGTAGACTTTGTA
GTACACCAAAATCGGTCTTGCGCTGGCTGTTGTGTGAGATGAGTGAATTC
GATGATTAACCTCGAAACGTTGTCATCATCCGTGTGTTGTTCCAATAATA
TATACTAATATATACTTTGGATGAACGTGCAGGTTCATTCACGTACTTTC
TCTTTTGCTTCCGTTGGTTGAGGTGATGAGTAGTGAGTATTGCGTCGGAT
TGCGGTATCGAGTCGTACGCTTTTTCTCATGGATAGATAATCGGAACGTC
ACCTGGAGTCAAGACACCTCATATAATCTCGAAGCGGGAAATTAAATGGT
TACGTCCGTTCATGAACCGAATATGGTCTCGCTTCTCCTGAAGTTGATAT
TACAAGGGCGCATTATGTTACCTGTCGAGCTACGTTGCTTGTACTTCTGT
CTTGCGTGACGGATGTTCATTTATTTATCTGCCGGGGGTTGTTCTAGCTA
TCCTAATACTATAGTATAGTATAGCAGGGCACGGGCTGTGTATGGACGGA
GACTGATACAAAATAAAAAGCGGTTCGGTCTTTAAAATGACGATGTTTCC
CACAAGTCGACGAACCGCTGAGTGAGTTGGGTGGATAGCGCTTTGCCCAA
GAAGGCCCAAGAAGGGATTGATTGCATGTCATGTCATGGCATGATTTCGG
TAAGAAGCATACTAAGCATGTTGTCAAGGCAAGGCTTCCTCTAGGATTGA
TGCAGATTGACTCATTCATGAATCGAAAGGAGAAAAAAGCTTGAATGAGC
TGAGCGAGTTGTGGGGAGATGAATGATCACGCGAAGCGATTGAGCTATGG
CAACGACATAATGATAAATGTTGATTGAGGAAGGCTCTTACGAGGTTTTC
TTGAAAGGTTAAACGAAGTATCTTACATACCTTTTCTTGAGCCACACCGA
GAGAAAAAAAATGGAGCGCTCTTGATGTCGG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1171:233401..239731+

>mRNA_A-nodosum_M_contig1171.66.1 ID=mRNA_A-nodosum_M_contig1171.66.1|Name=mRNA_A-nodosum_M_contig1171.66.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=654bp|location=Sequence derived from alignment at A-nodosum_M_contig1171:233401..239731+ (Ascophyllum nodosum dioecious)
ATGAAGAGGAAGATGAAAGAGACCGCTTTTACTGGCACGGCACCGTCAAA
CGGCATCGGCGTCGCACAGGCACAGGCACAGGCTCGGGCTAATGCGTTAC
ACGTTCGCACGCACACACGCGCCGGGGCTAGGACGGAGCTGGGCTCGCAG
ACCTGGCACCAAAATCAGGGCAATCAAGGAGGGCCGTCTCGAGAGGACTT
GGGCGCTACTAATTTTCAGGACTTTCGCGGAGCTCCCAGCACCGTCCCCC
CTGGTGGCTCGAGTTGTTCCTCATCCGCCATGGGTGCCATGGGTGTCATG
GGAGCTACCCTAACCCCTTCCCTGGCCGGCAGGCCTTGTCGGAGGGACTA
TTCAGACCTAGCTTCGATCCTCATGGATAGCGCCCCGCGGGAGAATTCGG
TCGACGCTGAGAGCGATCTGGTGACGCTTGGAGGCGACCCCTACAGCGAC
TATTCGCTTTCCGGCACACCGCACATCATGCCCTACAACTCGGACCCAGC
TGACGAATATTGGAACCCGGCTCGGGCAAGTCATTCCCCCGACGAGGATG
ATAAGGGAGGTCTCAGTGACCTGGATGGCATGGCGGCTGTTCCCCCAGAA
CTGGAACCATTTGGGCCTGGCATAGGAGATCCATGCGACCCGTACTGGGC
CTAG
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