mRNA_A-nodosum_M_contig1171.16.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1171.16.1
Unique NamemRNA_A-nodosum_M_contig1171.16.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1171.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1171contigA-nodosum_M_contig1171:11168..11730 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size160
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size159
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866579.024612-CDS-A-nodosum_M_contig1171:11167..112471680866579.024612-CDS-A-nodosum_M_contig1171:11167..11247Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1171 11168..11247 -
1680866579.036013-CDS-A-nodosum_M_contig1171:11651..117301680866579.036013-CDS-A-nodosum_M_contig1171:11651..11730Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1171 11652..11730 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1171.16.1prot_A-nodosum_M_contig1171.16.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1171 11168..11730 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1171.16.1

>prot_A-nodosum_M_contig1171.16.1 ID=prot_A-nodosum_M_contig1171.16.1|Name=mRNA_A-nodosum_M_contig1171.16.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=53bp
KWGIAIVARSLDVWCVGNEWEPDELVMHARDFRRVRRPASRCRPGGPFEA
GGS
back to top

mRNA from alignment at A-nodosum_M_contig1171:11168..11730-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1171.16.1 ID=mRNA_A-nodosum_M_contig1171.16.1|Name=mRNA_A-nodosum_M_contig1171.16.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=563bp|location=Sequence derived from alignment at A-nodosum_M_contig1171:11168..11730- (Ascophyllum nodosum dioecious)
AAATGGGGCATCGCCATTGTGGCGCGCTCGTTGGACGTTTGGTGTGTCGG
CAACGAGTGGGAACCCGACGAGCTGGTGAGTGAGTGAAGGTGTAGAACCC
TAACCCAAACCCTTAATCTCAACACGACTGCAGTACTAATACCATGCCGC
GGTCTTCCTGGCCTTGACGTCGCGATACGACCGCAGTATCAATAAATAAT
AAATACCATTCCGCGGTGATCCTGGCCTTGATGTCGCATACCCTGGTATT
ATTTTGAAGTATCGTAGGTGGGTGAGGTACTCCACTCTCCACTCTACTAT
TATAGGACCATTCCGTACTATAATAGTAATAGTAATAGTAATAGTAATAG
TAATAGTAATAGTAATAGTAATAGTAATAGTAATAGTAATAGTAATAGTA
ATAGTAATAGTAATAGTAATAGTAATAGTAATAGTGACTAGCCATCCATC
CCTTTTGAACTCCTCCACCCGTCGACGACGCAGTGCACGCTCGGGACTTT
CGGCGAGTCCGTCGACCCGCTAGTCGGTGTCGACCCGGTGGCCCTTTCGA
GGCCGGGGGGAGC
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig1171:11168..11730-

>mRNA_A-nodosum_M_contig1171.16.1 ID=mRNA_A-nodosum_M_contig1171.16.1|Name=mRNA_A-nodosum_M_contig1171.16.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=159bp|location=Sequence derived from alignment at A-nodosum_M_contig1171:11168..11730- (Ascophyllum nodosum dioecious)
AAATGGGGCATCGCCATTGTGGCGCGCTCGTTGGACGTTTGGTGTGTCGG
CAACGAGTGGGAACCCGACGAGCTGGTGATGCACGCTCGGGACTTTCGGC
GAGTCCGTCGACCCGCTAGTCGGTGTCGACCCGGTGGCCCTTTCGAGGCC
GGGGGGAGC
back to top