mRNA_A-nodosum_M_contig1170.8.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1170.8.1
Unique NamemRNA_A-nodosum_M_contig1170.8.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1170.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1170contigA-nodosum_M_contig1170:140492..143847 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size190
Hectar predicted targeting categoryother localisation
Exons2
Cds size189
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866578.5845928-CDS-A-nodosum_M_contig1170:140491..1406011680866578.5845928-CDS-A-nodosum_M_contig1170:140491..140601Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1170 140492..140601 +
1680866578.599187-CDS-A-nodosum_M_contig1170:143768..1438471680866578.599187-CDS-A-nodosum_M_contig1170:143768..143847Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1170 143769..143847 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1170.8.1prot_A-nodosum_M_contig1170.8.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1170 140492..143847 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1170.8.1

>prot_A-nodosum_M_contig1170.8.1 ID=prot_A-nodosum_M_contig1170.8.1|Name=mRNA_A-nodosum_M_contig1170.8.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=63bp
MPDCWPVVERQILEAFSRKKRKCAERTTSCGRGFASQEQGASGGALDGDE
DGASHSRLNLRGI
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mRNA from alignment at A-nodosum_M_contig1170:140492..143847+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1170.8.1 ID=mRNA_A-nodosum_M_contig1170.8.1|Name=mRNA_A-nodosum_M_contig1170.8.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3356bp|location=Sequence derived from alignment at A-nodosum_M_contig1170:140492..143847+ (Ascophyllum nodosum dioecious)
ATGCCAGACTGCTGGCCGGTAGTGGAACGTCAGATTCTCGAAGCATTCAG
TCGGAAGAAGAGGAAATGCGCCGAAAGGACTACATCGTGCGGGAGAGGAT
TCGCTTCCCAGTGAGTTGTGAGATTCAAACCGATGGCCTCTACCAGTAGT
TTGTTTTTGGTGCCAGGATGAACACCTATGGGTAGACTGCCCATCCCATT
TCGTATCATACATTCTCTGATATCCCACCGCCGCTGCCCTCAAAATTTAG
ATTGCAACCGTTCTCTGTTGCTGGTTCGCTACAGAAACAGCTGATAGCGT
ACTAAGTATACTACACACCCGCCCTCTCGCCGTTGTGCAGGGTGTGGGAA
ATATCGTATAGGTTCATGCTATGCGCTGGGCGGCCGGCAAGCTTGCTCCT
GGATAAAAATCCTCTCGATATCGTGCAGGAGGGCGCTACCCGCGCGTTCA
TGCCGTACCATCGCACTATGGACGAAGGTGGGTGCGCGACTTTTCGATTC
TCCCTGAGCGATTGTTGTTGTTGTTTTTTGTTGTTGTTTTCTCACATTAA
CTGATCCGCTACGAATCCAGCCGTGGTCACAAGATAGACGGAACCAAACC
AAATCAAACCGGGAATCGGAGATGAGCATGGAAAGCATACAGAAAAGGAC
GGGCAAGAAGTAGCCAGCAAAGGACATCGTCGCGATAAAATAGAGAACAT
AAACAAAACACACAGACAGTAGAAACAAACTAGAGCCAACCGCATAAAAA
ACGCAGGGAAGGTAGCCCTATAAGCGGTGGGATACAACCCAGGCATGAAG
ACAATGGCAAGGGCAACGGGTGCAACACACAGCGAAATAAAACACAGATG
GAGAGAAGGAGACAACAATCAAGGGAAGTAAAGGAATGAGTTAACTACCC
AAAAATGAAAGAGGAGCAGAACCCCTGTCGGGCTCATCTATATCGCAGGA
AGAAGACAAATTAAAACAAAACACACAAAGTCGCACACGTTGTTTTTATC
TCACATTATTAACTGGTCCGCTACGAATCCAGTTGTGGTCACAAGATAGA
GGAAGTTACACCAAAACAAATTGGGGGCGAACACGGTCGGAAAAGAAAAG
AAAAGAAAGCAGACAGAAGGAAGAGGCAGTAGCCTGCAGAGGACATCTTT
GCCAGGGAGGGATTCACAAGGGACAAAAACAAAACAAACCAGGGCAACCA
CATATAATATGCGTAGGGCAAGAAAGGCAACCATATACATATATAAATGG
TGCAAGACAGCCCAGATAGGAGGACAAAGCAAGGACAAGGACAACGGAAT
AAAATGAAGGAGGAGGGAAAGGGTATAGCAATCAAATCAAATAAGGAAAG
AGGTAAAGGCCACAGGGAGGGGCATCGCGAGTACCGGACTCCCCTACGGT
ATATCACAGGGAGAAAACACCTAGAAACAACAGCAACGAGGCAAAACAAA
ACAAAACAAAAAAACAAAAATCGCACACGTACTTACTGTACGACTTCACT
AACCTAGCGCTGGAGTTGCACGTTGGATTGACGAAGGTCCGCGCGTCGCC
AGGCGCTGTCGAGTGCTTCCGCTCCCCTCTCGACCCCCCGGTGCCACTTG
TCCGTGTTCTTCGCAGCAGTCATCCAGTCCCGTCCATCCTTGACAACAAC
TCCAAATACGACCCACTTCCGTCCTTTGCCCTTGCGCgGGACCGCGCCGA
AGGCCTCGAGATTTTTCTGGAGGCAGTCCACCCACGACGTCGCCGGTCGA
CCTCCTCGCTTGGGTCCTTGCACCGCCAGCCGCCCAAACATGACTCGCTT
TGACAGCCTTGAGTCGCCTTGTCGTACAAGGGCCCCGGCGAACCCAAGTT
GGCGCTTCCGAATTGTCGTTTCGATGCGTTCGGAACCGGTCCTCTCGAGA
ACCTCCCTATACGATAGGGGTTTATACCCGATACGGTCCTTGCGCCGAAA
GCCGATAATGCGCAAGAGTAGCTTGTGGTGGGCAGTACGTAGGCTGCTAA
AGTCCTGGGAGCGCATAGTCCACGTGGCACATCCGTACAGCATAGCTTCC
ATTACCTCCGCTTTGAAAAGCCTGATTTTGAGCGACAGTCGGGCATTCCG
TCGGTCGTACAGTTGGGAACTGTATTTCCTGACACTCGCCCAAGCGGCGC
CGATACGACGCTTAATCTCGATGTCAAGGTCCGCGCTCTCGCTGATAGCA
CCACCAAGGTACACAAACTCGGTCGTCTGTTTATACCGTTGCCCTGCCGC
CTCAATCCGCAGCGCGTTCGACGTTGTGTGGGGATGGGACCACAGGTGCA
TGGCCTCGGTCTTTTTTTCTGACACTGTCAGTCCGAATTCCTGGCATGTG
ACAACTATAACGCCCATCATCCTGGTGAGCCCACGAGGCGATGTCGACAC
CACCCCCGCATCGTCTGCATACAGCATCCCCCACACCGCTCGCCGGACCA
TTTCCAACGTCCCCTCCTTCCTGGGTCTGCCATCCTCACCCTTCGGCGCA
TCATCGAGGTACACCAAGTCCGAAACGATCAGCGGGTCCTCCGCGAACCT
CTGTAGGACCACTGTGATGACCGCCGCAAAAAATATATTGAACAATAGCG
GTGACAACACACATCCTTGCCGGAGTCCCTGGCAAACATTAAACCACGCC
GAGAAATCTCCATCATCCAACTGTACGCGAGCCCTCATACCATCGTGAGA
CATGCGGATGACCTTGATCATCCGAGGCGGGACTCCAAAACGGGCAAGTA
TTTCCCATAATAGCACACGATCGACCGAGTCGTATGCTTTTGCCAGATCG
ATGAAGCAAATCTCTAGGGAAGTGTTGCTTGTCCGTCCCAGTTCCTGAAG
TCTGCGCACGACGAACATCATATCGGTTGTCGAGCGTTGGGGTCGGAAAC
CGCACTTTTCTTCGGGGAGGATCCCAGCTTCTTCGCAGAAGTCGCCAAGT
CGGTTGGCCACGATTTTGAGGAGAACCTTGCCAGCATGCGCCACCAGAGG
CAGGCCCCTGTAGTTGCTACATTCGGTTCGATCCTTCTTCTTGTGTAGAA
CTTTTATGGTGGCATCCTTCCACTCCTGCGGTACTTCCCCCGTCATCCAT
ACAGCCACGATGATTTCGTGGAATGGGATTAGGGTTGAGAAAATCATCTG
ACGCACACATTCTTCTGCCGTTCAGCTTTAGAGTCCACATTCCTTTTGTT
TTGTATCTTCGCTTTCTAACCCATTACTAAGGCGTCGTTCGCGGTTGTTA
TTCTCTCCCAACGCCGTGACTCAACAGAGAACAAGGGGCCTCAGGCGGCG
CATTAGACGGTGATGAGGATGGTGCGAGTCATTCTCGATTGAACCTTCGC
GGTATC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1170:140492..143847+

>mRNA_A-nodosum_M_contig1170.8.1 ID=mRNA_A-nodosum_M_contig1170.8.1|Name=mRNA_A-nodosum_M_contig1170.8.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=189bp|location=Sequence derived from alignment at A-nodosum_M_contig1170:140492..143847+ (Ascophyllum nodosum dioecious)
ATGCCAGACTGCTGGCCGGTAGTGGAACGTCAGATTCTCGAAGCATTCAG
TCGGAAGAAGAGGAAATGCGCCGAAAGGACTACATCGTGCGGGAGAGGAT
TCGCTTCCCAAGAACAAGGGGCCTCAGGCGGCGCATTAGACGGTGATGAG
GATGGTGCGAGTCATTCTCGATTGAACCTTCGCGGTATC
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