mRNA_A-nodosum_M_contig117.54.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig117.54.1
Unique NamemRNA_A-nodosum_M_contig117.54.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig117.54.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig117contigA-nodosum_M_contig117:847770..848336 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size248
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size159
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866576.286748-UTR-A-nodosum_M_contig117:847769..8477801680866576.286748-UTR-A-nodosum_M_contig117:847769..847780Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig117 847770..847780 +
1680866576.5018616-UTR-A-nodosum_M_contig117:848258..8483361680866576.5018616-UTR-A-nodosum_M_contig117:848258..848336Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig117 848259..848336 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866576.4808433-CDS-A-nodosum_M_contig117:847780..8478021680866576.4808433-CDS-A-nodosum_M_contig117:847780..847802Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig117 847781..847802 +
1680866576.4896555-CDS-A-nodosum_M_contig117:848121..8482581680866576.4896555-CDS-A-nodosum_M_contig117:848121..848258Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig117 848122..848258 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig117.54.1prot_A-nodosum_M_contig117.54.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig117 847781..848258 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig117.54.1

>prot_A-nodosum_M_contig117.54.1 ID=prot_A-nodosum_M_contig117.54.1|Name=mRNA_A-nodosum_M_contig117.54.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=53bp
MANKATPARQRSSCGAQVEVPSSPLDEFGNDTDVYQRTNRRATKNLRGSR
KP*
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mRNA from alignment at A-nodosum_M_contig117:847770..848336+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig117.54.1 ID=mRNA_A-nodosum_M_contig117.54.1|Name=mRNA_A-nodosum_M_contig117.54.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=567bp|location=Sequence derived from alignment at A-nodosum_M_contig117:847770..848336+ (Ascophyllum nodosum dioecious)
GCTCGTGGGCTATGGCCAACAAGGCCACACCAGGTAACAAGTTGTAAATA
TTAGAGAAAGAGTTGGACATAAATCGATGAGATCGCGCCGGATTGGTTTG
AAAGGACGGGCGACAGACGAATGCAAACTAATAATGTGTGTACAAAAGCG
TCGGAAGCGCGTAAATACCAGTCATGGAAGTTCATGCAACTACAATACAC
TACGTGGTGGTTAGAACGATGGCGCACCTCGGCAGTCAAGAGGCGTTATT
CGAGGAAAATCGTCTATCTGTGTACTCTTAGTTTCTTGTTCTGGTTATTA
TGGCGTAATCTAACTGCAGCAAATGAATTTGGTTTCTTGCTTTGGTTCGT
AGCCAGGCAGAGATCAAGCTGTGGTGCTCAGGTCGAAGTGCCATCATCGC
CCCTAGATGAATTCGGAAACGATACCGATGTCTACCAACGCACCAACCGA
CGAGCCACCAAAAACCTTCGCGGGAGCCGCAAACCTTGAAGTCAAGAGCT
ATCAGAGTGTTGTTGAAGACGCCGTGGCTAATCTGGTCTTGATGAAAAAA
AGGGGAAGCAAGCTGGG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig117:847770..848336+

>mRNA_A-nodosum_M_contig117.54.1 ID=mRNA_A-nodosum_M_contig117.54.1|Name=mRNA_A-nodosum_M_contig117.54.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=159bp|location=Sequence derived from alignment at A-nodosum_M_contig117:847770..848336+ (Ascophyllum nodosum dioecious)
ATGGCCAACAAGGCCACACCAGCCAGGCAGAGATCAAGCTGTGGTGCTCA
GGTCGAAGTGCCATCATCGCCCCTAGATGAATTCGGAAACGATACCGATG
TCTACCAACGCACCAACCGACGAGCCACCAAAAACCTTCGCGGGAGCCGC
AAACCTTGA
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