mRNA_A-nodosum_M_contig117.46.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig117.46.1
Unique NamemRNA_A-nodosum_M_contig117.46.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig117.46.1 vs. uniprot
Match: A0A6H5JLQ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLQ9_9PHAE)

HSP 1 Score: 259 bits (663), Expect = 1.830e-76
Identity = 164/326 (50.31%), Postives = 204/326 (62.58%), Query Frame = 3
Query:  633 LTQHQAHGTSLGAVFATGAAGSSAYALSGQVDYEAAAAMAVAGMVASHMGARATAGMSASTLKLALGVLMITVAPLLPLRDRFFLGRTQEVQQESGELTAAGESSSTTPAVSSGKATALADKAANVADPKSSNDSSSAARKINLKAGQKVLHGGGECIKEEKYHDKGNDXXXXXXXEHEKGEGE-----GLHQHHHTWWQKLPKMFTIGLGSGFLAGVFGVGGGVVTVPAISLATDLGHKEVLGTSLAAMVLPALTGSATHFRQGNLMPKIALPLAVGTGLGAFLGGNYAARRLDEDTLKWGFSVIMVVLGARTISGARMAISVAA 1595
            LTQHQAHGTSLGAVFATGAAGS+AYAL+G VDY+AA A+AVAGM  +H GAR TAG+  ++LK+ALGVLM+ VAPL+PLRD+        V++   E +                            + +SS D++              L GGG  +  E                   GEG      G+        +++  M  IG GSGFLAGVFGVGGGV+TVP++SLATDLGHK+VLGTSLA+MVLPAL G+ TH+RQGNL+P+IA PLA GTG+GAF+GG YAAR LDE +LK  FS +M+VLG RTI+GAR A + AA
Sbjct:  116 LTQHQAHGTSLGAVFATGAAGSTAYALAGHVDYQAAGAIAVAGMAGAHAGARCTAGVDGNSLKMALGVLMLAVAPLVPLRDKLSHKDDVSVKERHEEES----------------------------EERSSADATG-------------LQGGGRLLPTEAG-----------------GEGTSPSVPGVSS------ERVTTMLAIGAGSGFLAGVFGVGGGVLTVPSVSLATDLGHKKVLGTSLASMVLPALIGATTHYRQGNLIPRIAFPLAFGTGVGAFVGGKYAARHLDESSLKLAFSFLMMVLGTRTIAGARSAAAAAA 377          
BLAST of mRNA_A-nodosum_M_contig117.46.1 vs. uniprot
Match: A0A836CP97_9STRA (Sulfite exporter TauE/SafE-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP97_9STRA)

HSP 1 Score: 186 bits (473), Expect = 3.060e-50
Identity = 136/328 (41.46%), Postives = 172/328 (52.44%), Query Frame = 3
Query:  627 IHLTQHQAHGTSLGAVFATGAAGSSAYALSGQVDYEAAAAMAVAGMVASHMGARATAGMSASTLKLALGVLMITVAPLLPLRDRFFLGRTQEVQQESGELTAAGESSSTTPAVSSGKATALADKAANVADPKSSNDSSSAARKINLKAGQKVLHGGGECIKEEKYHDKGNDXXXXXXXEHEKGEGEGLHQHHHTWWQKLPKMFTIGLGSGFLAGVFGVGGGVVTVPAISLATDLGHKEVLGTSLAAMVLPALTGSATHFRQGNLMPKIALPLAVGTGLGAFLGGNYAARRLDEDTLKWGFSVIMVVLGARTISGA---RMAISVAAKR 1601
            + LTQHQAHGTSLGAV ATGAAG++ +A +GQVD+ A   M VAGMV S +GA+AT  +  STLK  LGV MI +AP++  RD+      + V  E                                 +P  SN + S   ++    G     GGGE                      E+   + L            +M  IG  SGFLAG+FGVGGG VTVPAISL TD  HKE LG SLAAMVLPA++G   H+R GNL+P +A+PLAVGT LGA++   Y  + +  DTLK+ F+  M  LG RT+  A   R A + AA R
Sbjct:   13 LRLTQHQAHGTSLGAVCATGAAGAAGFAAAGQVDWMALPPMVVAGMVTSTLGAKATGRLKQSTLKRMLGVFMIGIAPVVIFRDQLLEYAHRPVHGE---------------------------------EPLHSNPNPS--NQLGGAGGD----GGGEH------------KAVVATAAVERPSSDPL------------RMAAIGACSGFLAGIFGVGGGAVTVPAISLCTDFTHKEALGLSLAAMVLPAVSGGFVHYRAGNLLPAVAVPLAVGTALGAYVSSTYVVQNVSNDTLKYAFAAFMATLGFRTLRSATPVRQAAANAAAR 277          
BLAST of mRNA_A-nodosum_M_contig117.46.1 vs. uniprot
Match: B7G9A3_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G9A3_PHATC)

HSP 1 Score: 149 bits (377), Expect = 1.730e-33
Identity = 115/320 (35.94%), Postives = 157/320 (49.06%), Query Frame = 3
Query:  609 ILRGACIHLTQHQAHGTSLGAVFATGAAGSSAYALSGQVDYEAAAAMAVAGMVASHMGARATAGMSASTLKLALGVLMITVAPLLPLRDRFFLGRTQEVQQESGELTAAGESSSTTPAVSSGKATALADKAANVADPKSSNDSSSAARKINLKAGQKVLHGGGECIKEEKYHDKGNDXXXXXXXEHEKGEGEGLHQHHHTWWQKLPKMFTIGLGSGFLAGVFGVGGGVVTVPAISLATDLGHKEVLGTSLAAMVLPALTGSATHFRQGNLMPKIALPLAVGTGLGAFLGGNYAARRLDEDTLKWGFSVIMVVLGARTISG 1568
            ++    + LTQHQAHGTSL AV ATG AG+ +Y    +V +E+AAA+A+ GMV + MGA  T   SA+TL+ ALGVLM+ +AP +P +  +   R +  +    E         T P+                 +P S                                                               + LP    IGLGSGFLAG+FGVGGG + VPA++LATD  H + L TSLAAM LPAL+G+ TH+R GN+  +IA  LA+G+ +GA+ GG    + LDE TL+WGFS ++ +LG     G
Sbjct:   75 LMTSRALRLTQHQAHGTSLFAVSATGVAGAWSYVH--EVQWESAAAIALCGMVTARMGAHVTTRTSATTLRKALGVLMLLMAPAVPAKA-YLTQRAEATEASRAEA-------ETMPS-----------------EPLS---------------------------------------------------------------RFLPPA-AIGLGSGFLAGLFGVGGGTIVVPALTLATDCTHYQALATSLAAMTLPALSGTYTHYRAGNVAVRIAPALALGSFVGAYTGGKLGLQ-LDETTLRWGFSGLLTILGTEQAVG 302          
BLAST of mRNA_A-nodosum_M_contig117.46.1 vs. uniprot
Match: D8LHF4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHF4_ECTSI)

HSP 1 Score: 137 bits (346), Expect = 2.970e-33
Identity = 104/243 (42.80%), Postives = 132/243 (54.32%), Query Frame = 3
Query:  633 LTQHQAHGTSLGAVFATGAAGSSAYALSGQVDYEAAAAMAVAGMVASHMGARATAGMSASTLKLALGVLMITVAPLLPLRDRFFLGRTQEVQQESGELTAAGESSSTTPAVSSGKATALADKAANVADPKSSNDSSSAARKINLKAGQKVLHGGGECIKEEKYHDKGNDXXXXXXXEHEKGEGE-----GLHQHHHTWWQKLPKMFTIGLGSGFLAGVFGVGGGVVTVPAISLATDLGHKEVL 1346
            LTQHQAHGTSLGAVFATGAAGS+AYAL+G VDY+AA A+AVAGM A+H GAR TAG+  ++LK+ALGVLM+ VAPL+PLRD+    +   ++  +                           A ++A                      +L GGG    EE                   GEG      G+        +++  M  IG GSGFLAGVFGVGGGV+TVP++SLATDLGHK+ +
Sbjct:   32 LTQHQAHGTSLGAVFATGAAGSTAYALAGHVDYQAAGAIAVAGMAAAHAGARCTAGVDGNSLKMALGVLMLAVAPLVPLRDKLSHNKGPCLRPSTA--------------------------ADDIAXXXXXXXXXXXXXXXXXXEATGLLDGGGLIPMEEG------------------GEGTSPSVPGVSS------ERVTTMLAIGAGSGFLAGVFGVGGGVLTVPSVSLATDLGHKKAV 224          
BLAST of mRNA_A-nodosum_M_contig117.46.1 vs. uniprot
Match: I2CRK5_NANGC (Uncharacterized protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=I2CRK5_NANGC)

HSP 1 Score: 130 bits (328), Expect = 7.010e-32
Identity = 64/132 (48.48%), Postives = 92/132 (69.70%), Query Frame = 3
Query: 1212 WQKLPKMFTIGLGSGFLAGVFGVGGGVVTVPAISLATDLGHKEVLGTSLAAMVLPALTGSATHFRQGNLMPKIALPLAVGTGLGAFLGGNYAARRLDEDTLKWGFSVIMVVLGARTISGARMAISVAAKRSR 1607
            W +  ++ +IG GSGFLAG+FGVGGG VT+PA+++  ++ H + LGTSLAAMV  AL G+ +H  QG+++     PLAVG+  G+FLGG   A ++ E+ LKWGF ++MVVLG++TI  A    S+A   S+
Sbjct:   11 WTRRLQLMSIGAGSGFLAGLFGVGGGAVTIPALTMCLEMSHYQALGTSLAAMVPTALVGTHSHHAQGHVVWSFVAPLAVGSLCGSFLGGKEIAMQIPENYLKWGFGIMMVVLGSKTIYSAGPLKSMALSASK 142          
BLAST of mRNA_A-nodosum_M_contig117.46.1 vs. uniprot
Match: A0A7S1VQG5_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VQG5_9STRA)

HSP 1 Score: 135 bits (341), Expect = 7.240e-32
Identity = 108/328 (32.93%), Postives = 154/328 (46.95%), Query Frame = 3
Query:  597 LIRAILRGACIHLTQHQAHGTSLGAVFATGAAGSSAYALSGQVDY------EAAAAMAVAGMVASHMGARATAGMSASTLKLALGVLMITVAPLLPLRDRFFLGRTQEVQQESGELTAAGESSSTTPAVSSGKATALADKAANVADPKSSNDSSSAARKINLKAGQKVLHGGGECIKEEKYHDKGNDXXXXXXXEHEKGEGEGLHQHHHTWWQKLPKMFTIGLGSGFLAGVFGVGGGVVTVPAISLATDLGHKEVLGTSLAAMVLPALTGSATHFRQGNLMPKIALPLAVGTGLGAFLGGNYAARRLDEDTLKWGFSVIMVVLGARTI 1562
             +   L    + +TQHQAHGTSL AV ATG AG+  YA SG+ D+      ++AAA+A  GM+ + +GA  T  ++   L+ ALGV MI VAPL+P        R   ++Q                     K+T  AD+                                                                    +  + K+     IGLGSG+LAG+FGVGGG + VPA++L TD+ H + LGTSL AM+LPA+ G+  HF   ++  +IA  LA G+ +GA+ GG    +  DE+ L+WGF+ +MV+LGART+
Sbjct:   61 FVMVPLMTGVLRITQHQAHGTSLFAVAATGIAGALGYA-SGEGDFNDVVQWDSAAAIAACGMLTARLGAYTTVHLTEKFLQQALGVFMIGVAPLIP-------ARAWTLKQA--------------------KSTQPADE--------------------------------------------------------------------YDIYTKIVVPGAIGLGSGYLAGLFGVGGGAIVVPALALGTDMNHYQALGTSLCAMILPAVVGTYYHFASNHVQMRIAPALAAGSFVGAYCGGKIGLKT-DENVLRWGFASLMVMLGARTL 291          
BLAST of mRNA_A-nodosum_M_contig117.46.1 vs. uniprot
Match: A0A7S3DRW2_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DRW2_9STRA)

HSP 1 Score: 136 bits (342), Expect = 9.010e-32
Identity = 108/323 (33.44%), Postives = 155/323 (47.99%), Query Frame = 3
Query:  597 LIRAILRGACIHLTQHQAHGTSLGAVFATGAAGSSAYALSGQVDYEAAAAMAVAGMVASHMGARATAGMSASTLKLALGVLMITVAPLLPLRDRFFLGRTQEVQQESGELTAAGESSSTTPAVSSGKATALADKAANVADPKSSNDSSSAARKINLKAGQKVLHGGGECIKEEKYHDKGNDXXXXXXXEHEKGEGEGLHQHHHTWWQKLPKMFTIGLGSGFLAGVFGVGGGVVTVPAISLATDLGHKEVLGTSLAAMVLPALTGSATHFRQGNLMPKIALPLAVGTGLGAFLGGNYAARRLDEDTLKWGFSVIMVVLGARTIS 1565
            +I  +   A + L+QHQAHGTSL AV ATG AG+ +Y     V +E A+A+A+ G+  + +GAR+ + +S   LK ALG+LM+T+AP +  +  + L +T  +  ES E                                   +DS   +  I           G E I                                   W+++     IGL SG+LAG+FGVGGGV+ VPA++L T   H E LGTSLAAMVLPA  G+ TH++  N+  + A  LA+G           A +  +E TL+WGFS ++VVLG RT++
Sbjct:   76 MIPLMTNRALLGLSQHQAHGTSLFAVTATGLAGAWSY--KDSVRFEEASAIALTGIFTARLGARSASQLSEKALKRALGMLMVTMAPAVHAKQ-YILQQTVTISTESNE-----------------------------------HDSDDTSTSI-----------GDETIL----------------------------------WKRIAPASAIGLCSGYLAGLFGVGGGVLVVPALTLFTGCDHYEALGTSLAAMVLPAAAGTLTHYQANNVAIRAAPGLALGACXXXXXXXXVAQQYTNETTLRWGFSGLLVVLGLRTLA 315          
BLAST of mRNA_A-nodosum_M_contig117.46.1 vs. uniprot
Match: A0A7S4VM12_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VM12_9STRA)

HSP 1 Score: 132 bits (332), Expect = 3.980e-30
Identity = 61/116 (52.59%), Postives = 88/116 (75.86%), Query Frame = 3
Query: 1215 QKLPKMFTIGLGSGFLAGVFGVGGGVVTVPAISLATDLGHKEVLGTSLAAMVLPALTGSATHFRQGNLMPKIALPLAVGTGLGAFLGGNYAARRLDEDTLKWGFSVIMVVLGARTI 1562
            ++L     IGLGSGFLAG+FGVGGG + VPA++L+TD+ H + LGTSLAAM LPA+ G+ TH+ +GN+  ++A  LA+G+  GAF+GG +    +DE +L++GFS +MVVLG +T+
Sbjct:  233 ERLLPASIIGLGSGFLAGLFGVGGGAIVVPALTLSTDMTHHQALGTSLAAMTLPAIVGTVTHYGKGNVSMRVAPMLAMGSFFGAFVGGRFVGLNMDEQSLRYGFSGLMVVLGTKTL 348          
BLAST of mRNA_A-nodosum_M_contig117.46.1 vs. uniprot
Match: A0A4D9CV75_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CV75_9STRA)

HSP 1 Score: 132 bits (331), Expect = 4.690e-30
Identity = 120/353 (33.99%), Postives = 177/353 (50.14%), Query Frame = 3
Query:  627 IHLTQHQAHGTSLGAVFATGAAGSSAYALSGQVDYEAAAAMAVAG--------MVASHMGARATAGMSASTLKLALGVLMITVAPLLPLRDRFFLGRTQEVQQESGELTAAGESSSTTPAVSSGKATALADKAANVADPKSSNDSSSAARKINLKAGQKVLHGG--------GECIKEEKYHDKGNDXXXXXXXEHEKGEGE-----GLHQHHHTWWQKLPKMFTIGLGSGFLAGVFGVGGGVVTVPAISLATDLGHKEVLGTSLAAMVLPALTGSATHFRQGNLMPKIALPLAVGTGLGAFLGGNYAARRLDEDTLKWGFSVIMVVLGARTISGA----RMAISVA-AKRSR 1607
            +  +QHQAHGTSL AV ATG+ G+ +YA +G VD+EA   +   G         +    G +A A  S            I+ +    LR   ++     +    G             AV SG+ +A   +   V              ++  K G++   GG        GE  K E+  ++          E  KG+G+     G     + W ++L ++ +IG GSGFLAG+FGVGGG VT+PA+++  ++ H + LGTSLAAMV  AL G+ +H  QG+++     PLAVG+  G+FLGG   A ++ E+ LKWGF ++MVVLG++TI  A     MA+S + AKRSR
Sbjct:   34 LKFSQHQAHGTSLAAVVATGSGGAISYASAGAVDWEARRGVGKGGGRCGQAWDAIGRGEGLKAPAFES------------ISFSSSSMLRAALYVAGLGMMTARMG-------------AVVSGRLSAATLQRLCV--------------RMRGKEGRRRGEGGYTGGRSRGGEGDKRER--ERNEILAFFGGNEEGKGDGKXXXKGGPSDEQNDWTRRL-QLMSIGAGSGFLAGLFGVGGGAVTIPALTMCLEMSHYQALGTSLAAMVPTALVGTHSHHVQGHVVWSFVAPLAVGSLCGSFLGGKEIAMQVPENYLKWGFGIMMVVLGSKTIYSAGPLKSMALSASKAKRSR 344          
BLAST of mRNA_A-nodosum_M_contig117.46.1 vs. uniprot
Match: A0A6U2NKE9_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A6U2NKE9_9STRA)

HSP 1 Score: 128 bits (322), Expect = 4.720e-29
Identity = 60/115 (52.17%), Postives = 88/115 (76.52%), Query Frame = 3
Query: 1218 KLPKMFTIGLGSGFLAGVFGVGGGVVTVPAISLATDLGHKEVLGTSLAAMVLPALTGSATHFRQGNLMPKIALPLAVGTGLGAFLGGNYAARRLDEDTLKWGFSVIMVVLGARTI 1562
            KL     IG+GSGFLAG+FGVGGG V VPA++++TDL H + L TSL AM LPAL+G+ TH+++GN+  ++ALPLA G+ +GA++GG   +  + E+ L+WGFS ++V LGA+++
Sbjct:  206 KLIPAGMIGIGSGFLAGLFGVGGGTVVVPALTVSTDLSHYQALSTSLLAMTLPALSGTFTHYQKGNVAKRVALPLAAGSFVGAYVGGKLGSN-VSEEKLRWGFSCLLVFLGAKSV 319          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig117.46.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JLQ9_9PHAE1.830e-7650.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CP97_9STRA3.060e-5041.46Sulfite exporter TauE/SafE-domain-containing prote... [more]
B7G9A3_PHATC1.730e-3335.94Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
D8LHF4_ECTSI2.970e-3342.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
I2CRK5_NANGC7.010e-3248.48Uncharacterized protein n=2 Tax=Nannochloropsis ga... [more]
A0A7S1VQG5_9STRA7.240e-3232.93Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S3DRW2_9STRA9.010e-3233.44Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A7S4VM12_9STRA3.980e-3052.59Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A4D9CV75_9STRA4.690e-3033.99Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A6U2NKE9_9STRA4.720e-2952.17Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig117contigA-nodosum_M_contig117:632775..636991 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2850.Phatr49038
PFAMsNopRA1
Model size2095
Max annot lvl2836|Bacillariophyta
KEGG koko:K14861
Hectar predicted targeting categorysignal peptide
Exons5
Evalue3.48e-29
EggNOG OGsKOG1791@1|root,KOG1791@2759|Eukaryota,2XFFK@2836|Bacillariophyta
Ec32 ortholog descriptionTransmembrane protein TauE like
Ec32 orthologEc-13_000320.1
DescriptionNucleolar pre-ribosomal-associated protein 1
Cds size864
COG categoryS
BRITEko00000,ko03009
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig117.46.1prot_A-nodosum_M_contig117.46.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig117 633260..635671 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866578.1064866-UTR-A-nodosum_M_contig117:632774..6332591680866578.1064866-UTR-A-nodosum_M_contig117:632774..633259Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig117 632775..633259 -
1680866578.1562264-UTR-A-nodosum_M_contig117:635671..6356841680866578.1562264-UTR-A-nodosum_M_contig117:635671..635684Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig117 635672..635684 -
1680866578.1658125-UTR-A-nodosum_M_contig117:636258..6369911680866578.1658125-UTR-A-nodosum_M_contig117:636258..636991Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig117 636259..636991 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866578.1186378-CDS-A-nodosum_M_contig117:633259..6333771680866578.1186378-CDS-A-nodosum_M_contig117:633259..633377Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig117 633260..633377 -
1680866578.128612-CDS-A-nodosum_M_contig117:634130..6342131680866578.128612-CDS-A-nodosum_M_contig117:634130..634213Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig117 634131..634213 -
1680866578.13644-CDS-A-nodosum_M_contig117:634599..6346681680866578.13644-CDS-A-nodosum_M_contig117:634599..634668Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig117 634600..634668 -
1680866578.1444752-CDS-A-nodosum_M_contig117:635077..6356711680866578.1444752-CDS-A-nodosum_M_contig117:635077..635671Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig117 635078..635671 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig117.46.1

>prot_A-nodosum_M_contig117.46.1 ID=prot_A-nodosum_M_contig117.46.1|Name=mRNA_A-nodosum_M_contig117.46.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=288bp
MAVAGMVASHMGARATAGMSASTLKLALGVLMITVAPLLPLRDRFFLGRT
QEVQQESGELTAAGESSSTTPAVSSGKATALADKAANVADPKSSNDSSSA
ARKINLKAGQKVLHGGGECIKEEKYHDKGNDDKGNDDREHEKGEGEGLHQ
HHHTWWQKLPKMFTIGLGSGFLAGVFGVGGGVVTVPAISLATDLGHKEVL
GTSLAAMVLPALTGSATHFRQGNLMPKIALPLAVGTGLGAFLGGNYAARR
LDEDTLKWGFSVIMVVLGARTISGARMAISVAAKRSR*
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mRNA from alignment at A-nodosum_M_contig117:632775..636991-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig117.46.1 ID=mRNA_A-nodosum_M_contig117.46.1|Name=mRNA_A-nodosum_M_contig117.46.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=4217bp|location=Sequence derived from alignment at A-nodosum_M_contig117:632775..636991- (Ascophyllum nodosum dioecious)
GCCTGTTGGGATCACTGGTGGGCATGGGCGGTGGTTTTGTAGCCATCCCT GCGCTGACGGGCTGGCTGCGGCTGACTCAGGTCAGGAAATCATTTTCCTG TGCTTAGCCTTTATGTTTTGTCTGGATACGAGTAACGGAGATTATATTAC CTCTAGTGTACGGTTGGCTGTCTCATGCTCGTGGCATTGAACAACCAATA CTTAATCTTGCAACATAAGCCATTCGAAGCAACTCATGGGGGGATATGAC TATTTTTGTTTCGGTGACAGTTGCAGTATATCTATTTCCCGTACTGTACA GTACGGGAGATAGATAGTAACGGCTGTGAATATCTCAAGTGCAACCAGTA ACGCCTGCCCAAGGTACCCAAGACTAGTTTAGTTGATGATGGTATCATGG TCAACGGTGCCTCCTCCTGCTTTTCCAACTACGCCGTGTCGTCTCTAACC AAGTACAGTTGCAACATACCGCGACTCGAGCCTGCCGACTACGTAACGCG GGAAGTGAAAGTCGTCGTAGGGCCCCCTTCCCTCCAAGACGCCAACCGTG ACCTCAGCCTCAACCGACTCCGCTTTCCCCTCGGTGGGACTCGTGTCTCA TTCGCGCCATCCTTCGGGGTGCATGCATCCACCTCACGCAGCACCAGGCT CACGGCACGTCGTTGGGAGCGGTATTCGCAACGGGGGCTGCCGGATCTTC GGCCTATGCCTTGTCCGGACAAGTCGACTACGAGTGAGTGCTGACCGCGA CCATGGTGATGACTGACGATAATGACATCATAAATCTAAGTCAAGATCCA TACCGCCCCATCACTCTCTGGAACGCTGGAACGCGGGGTGTGTAACATCG ACTACAGCTAGAAGTGACACACTGCACAAAAAAATGGCGTGGTGCTCTTG GCGGAAGTTGGACGTGGTACCGGATACTGATGTAATTGTTCACGGCCAAA CAAGTTAGCTATGGATGCGATCTGCGATCCCGAACCTCACCCGGTGGGTC CAGTCACTTTTGACAATGGCGGTTGGAGGTCTAGCAGCCCCGAACAGCCG AGCTGACTAACCCGGTAATGTAGTGTTTCGCTCTATCGTACGTGGTGAAG AGGCTACGCCGATTGCCGCTACAATCTCGCAAGGAATCCAGCCTTCACGG TATGAGTAGTCACGGGGTGATCCTATTATAATTTTCACTATTAATGGACG AGTAAAATGAGCAGAAGCAGACTATAAAAACACTACTCGTATTTTGACAG GTACCCTGTGGTACAAATTATACGCTGTTTTCTTGTCCTCCGTTTCTGAC GCCCAAGGGCAGCGGCGGCGATGGCCGTAGCTGGAATGGTAGCTTCGCAC ATGGGAGCGCGAGCCACGGCGGGCATGAGCGCCTCGACGCTGAAGCTGGC CCTTGGGGTTCTGATGATCACCGTAGCGCCGCTTCTACCCCTGCGGGACA GATTTTTCTTGGGGCGTACACAGGAAGTGCAACAGGAAAGCGGTGAACTT ACGGCGGCGGGTGAATCTTCCAGCACGACCCCGGCAGTATCCTCGGGCAA GGCGACTGCGTTAGCCGACAAAGCTGCCAACGTTGCCGACCCTAAATCTT CCAACGACTCTTCTTCGGCCGCTCGCAAGATTAACCTGAAGGCGGGGCAG AAAGTGCTTCATGGGGGAGGGGAATGCATCAAAGAAGAAAAATACCACGA TAAAGGGAATGATGATAAAGGAAATGACGATAGAGAACATGAGAAAGGAG AAGGAGAGGGTTTGCATCAACATCACCACACTTGGTGGCAGAAGCTTCCG AAGATGTTCACCATCGGGCTCGGGAGCGGTTTCCTGGCTGGCGTTTTTGG AGTTGGAGGAGGGGTAGTTACCGTCCCCGCTATTTCATTGGCTACGGATC TGGGGCATAAGGAGGTCTGTGTGTGTGTGTGTGGGAGAGAGAGAGAGAGA GTGTATTCGTACTGACTATAATCTGCTGAACAGTTAGGGTCCCGCGGTAA AATGATGTGCATGGGTTCTGGAATCTGGCGAATCGAGGCCATTGGTGGTC GATCATTGATGAAACGAAAAATCAAATCATCGTCGTGAAAAATCAAATCA TCGTCGTGTCACAAGTTGAGCACTCCAATATCGACAAATGTATGCTTTCG CTGTTATATATATCTCTCAATGTGCCCCTGTATCCGCGAAATCAACTTGA GATGGTTGGAGATGAGTTTTCCTTCAAACGTCTCTCGGGTAGGTTGTACT TTCATTTAACATCTCGTTCATTCTTTAATGCCGGCGAATGGTTTCGCTGG GCACCACTTTATCGCTCTCGAAGGTGCTGGGTACTTCTCTGGCTGCGATG GTGTTACCCGCGCTTACGGGCTCAGCTACCCACTTCCGGCAGGTGAGAGA GAGTCTCTCCACACCGATGACTCGTGCTTGGGCTATTGTAAATAAATAAA TAAAGTAACTTCCTTTGTTGAGATGCTATAGGCCCCTCTCCCGAGCGTTT CCATAACCTAGAAGACTACTGGTGTCCCGCCGCAACAGTGCTGGCGCGGT TTCGGGCGTTTCGAAACACCTCGGTAAGACTTTAGCGAGCAAAATTTATG AAGACATAAAATTCCCGAAAACGTCTCATCGAGGTACATATGCTTCAGAA GGTACAGTAGAGGTCATATGCTTTGTGGATGACGTCCATCACCGGGAACC GTCGGAGGAAGCCGCGGCCGCTCGACTGCTTTCCTGTAGGGGAGGTTGAT ATTTGATGCCGATGCCTGTTGTGCGCAGGGCAATCTTATGCCGAAGATCG CGCTCCCCTTGGCGGTAGGGACCGGACTTGGGGCTTTCCTTGGAGGGAAT TACGCAGCTAGGTGAACAAAATAAAGTGATCCATCCGCGCTACCGTTTCG TTCTCCATCCCCTCACTAGATTATCCCAATAGAGAGAGTTCAAGGGATAG AAGAGAGTTCAAGGGATAGACCTAAGGCGTATTTAGTGACAAAATGCTGC CCGCGGAGGTACTGAAGTACTCACGGGATGATCGGGTGGCTGTGCAGTCG AGCTTGATACGGTTAGGGTATATAAACCCTGGAGGGAAGGGATGTGTGTC CTCGTTCGATATTCTTGGCAATAACTTAACACAGCACGCGCGAAAGCTGT ACTTTCTATTAGCAGGAAAAGCTTGCGCTGTCGGCGCTTCTTGAGCTGCC GATAATGGCTGGATGGGCAATTTCGATCCCCGACTGTTTGTTCGAATTTG GACGGTCTGCTTTACCCGCTACTAGAGTCGTAACAGACACTACCGGATTG TGACGTTACCTAATCCAGCCGAAGCATTTTTTGCATCACCTTAGCGTGAA TCGCGAGTCGTCTATGTCCCACCCGAAGGTTTGATTGCCGAGAGGTGAGG CCGATGCTCGTCCCATTCTCCCGTAGTCAAGAGATCCATCATGGCTTCTG ACTGGAATATGCTTTTCAACGCAAACCACACAGATGCACACGTGGCGGTA ATTCTAGTCTAGACTGTCTGTCTGGAGGACATTTTTTAGCCCAAAGTGAT AACGACAAGTTTTCTATTGGAATTCATATACTTTCGCTCGCCACCCATAC CACTTTGTGCGCAGGCGTCTGGACGAAGATACGTTAAAGTGGGGTTTCTC CGTCATAATGGTAGTGTTGGGAGCAAGAACGATATCTGGGGCGAGGATGG CGATATCTGTCGCTGCCAAGCGTTCCAGGTAGAGACCCAACCCATGACCT GCGATCTACAACCAAGAGTATGTTTGAATCTGCATCGTCGATAGATATCG GGAAGGGATAGTGTCTTGTCACGTGTTTTGGTGGGTTGCCGGGCGGATCA TGGAAGATCATAAACTGTACGGAAACTCCGACATGACTCCCTTGAAAAGC TACAATAAAAGCGCTCCGATAGCGAAGGAAAATCATGAGCCTGAATAGCG CCTTAGTTAGCGGAGTATCCCGAAGAAACAGAGGCGAAGATGGAAGGAGC TGCTCCACAAAAGAAACGCCGACAACGCCGAAAGCCCCGAGAGAACGCCT CGAATTGGCGAGGGGAACGTATTCGCCAGAGCTGAAGAAAGCGAAGCAAA AGACACCCAATACAACTTTGAACCAGTAGTAACCACATAGTAACTGGATG TTGGTTGGGGGGGGGGCAGAATATGCGGATACGGTTTTAACTGGAGATAT GTAAGCAGTAATTGGGG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig117:632775..636991-

>mRNA_A-nodosum_M_contig117.46.1 ID=mRNA_A-nodosum_M_contig117.46.1|Name=mRNA_A-nodosum_M_contig117.46.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=864bp|location=Sequence derived from alignment at A-nodosum_M_contig117:632775..636991- (Ascophyllum nodosum dioecious)
ATGGCCGTAGCTGGAATGGTAGCTTCGCACATGGGAGCGCGAGCCACGGC
GGGCATGAGCGCCTCGACGCTGAAGCTGGCCCTTGGGGTTCTGATGATCA
CCGTAGCGCCGCTTCTACCCCTGCGGGACAGATTTTTCTTGGGGCGTACA
CAGGAAGTGCAACAGGAAAGCGGTGAACTTACGGCGGCGGGTGAATCTTC
CAGCACGACCCCGGCAGTATCCTCGGGCAAGGCGACTGCGTTAGCCGACA
AAGCTGCCAACGTTGCCGACCCTAAATCTTCCAACGACTCTTCTTCGGCC
GCTCGCAAGATTAACCTGAAGGCGGGGCAGAAAGTGCTTCATGGGGGAGG
GGAATGCATCAAAGAAGAAAAATACCACGATAAAGGGAATGATGATAAAG
GAAATGACGATAGAGAACATGAGAAAGGAGAAGGAGAGGGTTTGCATCAA
CATCACCACACTTGGTGGCAGAAGCTTCCGAAGATGTTCACCATCGGGCT
CGGGAGCGGTTTCCTGGCTGGCGTTTTTGGAGTTGGAGGAGGGGTAGTTA
CCGTCCCCGCTATTTCATTGGCTACGGATCTGGGGCATAAGGAGGTGCTG
GGTACTTCTCTGGCTGCGATGGTGTTACCCGCGCTTACGGGCTCAGCTAC
CCACTTCCGGCAGGGCAATCTTATGCCGAAGATCGCGCTCCCCTTGGCGG
TAGGGACCGGACTTGGGGCTTTCCTTGGAGGGAATTACGCAGCTAGGCGT
CTGGACGAAGATACGTTAAAGTGGGGTTTCTCCGTCATAATGGTAGTGTT
GGGAGCAAGAACGATATCTGGGGCGAGGATGGCGATATCTGTCGCTGCCA
AGCGTTCCAGGTAG
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