mRNA_A-nodosum_M_contig117.46.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig117.46.1 vs. uniprot
Match: A0A6H5JLQ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLQ9_9PHAE) HSP 1 Score: 259 bits (663), Expect = 1.830e-76 Identity = 164/326 (50.31%), Postives = 204/326 (62.58%), Query Frame = 3
Query: 633 LTQHQAHGTSLGAVFATGAAGSSAYALSGQVDYEAAAAMAVAGMVASHMGARATAGMSASTLKLALGVLMITVAPLLPLRDRFFLGRTQEVQQESGELTAAGESSSTTPAVSSGKATALADKAANVADPKSSNDSSSAARKINLKAGQKVLHGGGECIKEEKYHDKGNDXXXXXXXEHEKGEGE-----GLHQHHHTWWQKLPKMFTIGLGSGFLAGVFGVGGGVVTVPAISLATDLGHKEVLGTSLAAMVLPALTGSATHFRQGNLMPKIALPLAVGTGLGAFLGGNYAARRLDEDTLKWGFSVIMVVLGARTISGARMAISVAA 1595
LTQHQAHGTSLGAVFATGAAGS+AYAL+G VDY+AA A+AVAGM +H GAR TAG+ ++LK+ALGVLM+ VAPL+PLRD+ V++ E + + +SS D++ L GGG + E GEG G+ +++ M IG GSGFLAGVFGVGGGV+TVP++SLATDLGHK+VLGTSLA+MVLPAL G+ TH+RQGNL+P+IA PLA GTG+GAF+GG YAAR LDE +LK FS +M+VLG RTI+GAR A + AA
Sbjct: 116 LTQHQAHGTSLGAVFATGAAGSTAYALAGHVDYQAAGAIAVAGMAGAHAGARCTAGVDGNSLKMALGVLMLAVAPLVPLRDKLSHKDDVSVKERHEEES----------------------------EERSSADATG-------------LQGGGRLLPTEAG-----------------GEGTSPSVPGVSS------ERVTTMLAIGAGSGFLAGVFGVGGGVLTVPSVSLATDLGHKKVLGTSLASMVLPALIGATTHYRQGNLIPRIAFPLAFGTGVGAFVGGKYAARHLDESSLKLAFSFLMMVLGTRTIAGARSAAAAAA 377
BLAST of mRNA_A-nodosum_M_contig117.46.1 vs. uniprot
Match: A0A836CP97_9STRA (Sulfite exporter TauE/SafE-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP97_9STRA) HSP 1 Score: 186 bits (473), Expect = 3.060e-50 Identity = 136/328 (41.46%), Postives = 172/328 (52.44%), Query Frame = 3
Query: 627 IHLTQHQAHGTSLGAVFATGAAGSSAYALSGQVDYEAAAAMAVAGMVASHMGARATAGMSASTLKLALGVLMITVAPLLPLRDRFFLGRTQEVQQESGELTAAGESSSTTPAVSSGKATALADKAANVADPKSSNDSSSAARKINLKAGQKVLHGGGECIKEEKYHDKGNDXXXXXXXEHEKGEGEGLHQHHHTWWQKLPKMFTIGLGSGFLAGVFGVGGGVVTVPAISLATDLGHKEVLGTSLAAMVLPALTGSATHFRQGNLMPKIALPLAVGTGLGAFLGGNYAARRLDEDTLKWGFSVIMVVLGARTISGA---RMAISVAAKR 1601
+ LTQHQAHGTSLGAV ATGAAG++ +A +GQVD+ A M VAGMV S +GA+AT + STLK LGV MI +AP++ RD+ + V E +P SN + S ++ G GGGE E+ + L +M IG SGFLAG+FGVGGG VTVPAISL TD HKE LG SLAAMVLPA++G H+R GNL+P +A+PLAVGT LGA++ Y + + DTLK+ F+ M LG RT+ A R A + AA R
Sbjct: 13 LRLTQHQAHGTSLGAVCATGAAGAAGFAAAGQVDWMALPPMVVAGMVTSTLGAKATGRLKQSTLKRMLGVFMIGIAPVVIFRDQLLEYAHRPVHGE---------------------------------EPLHSNPNPS--NQLGGAGGD----GGGEH------------KAVVATAAVERPSSDPL------------RMAAIGACSGFLAGIFGVGGGAVTVPAISLCTDFTHKEALGLSLAAMVLPAVSGGFVHYRAGNLLPAVAVPLAVGTALGAYVSSTYVVQNVSNDTLKYAFAAFMATLGFRTLRSATPVRQAAANAAAR 277
BLAST of mRNA_A-nodosum_M_contig117.46.1 vs. uniprot
Match: B7G9A3_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G9A3_PHATC) HSP 1 Score: 149 bits (377), Expect = 1.730e-33 Identity = 115/320 (35.94%), Postives = 157/320 (49.06%), Query Frame = 3
Query: 609 ILRGACIHLTQHQAHGTSLGAVFATGAAGSSAYALSGQVDYEAAAAMAVAGMVASHMGARATAGMSASTLKLALGVLMITVAPLLPLRDRFFLGRTQEVQQESGELTAAGESSSTTPAVSSGKATALADKAANVADPKSSNDSSSAARKINLKAGQKVLHGGGECIKEEKYHDKGNDXXXXXXXEHEKGEGEGLHQHHHTWWQKLPKMFTIGLGSGFLAGVFGVGGGVVTVPAISLATDLGHKEVLGTSLAAMVLPALTGSATHFRQGNLMPKIALPLAVGTGLGAFLGGNYAARRLDEDTLKWGFSVIMVVLGARTISG 1568
++ + LTQHQAHGTSL AV ATG AG+ +Y +V +E+AAA+A+ GMV + MGA T SA+TL+ ALGVLM+ +AP +P + + R + + E T P+ +P S + LP IGLGSGFLAG+FGVGGG + VPA++LATD H + L TSLAAM LPAL+G+ TH+R GN+ +IA LA+G+ +GA+ GG + LDE TL+WGFS ++ +LG G
Sbjct: 75 LMTSRALRLTQHQAHGTSLFAVSATGVAGAWSYVH--EVQWESAAAIALCGMVTARMGAHVTTRTSATTLRKALGVLMLLMAPAVPAKA-YLTQRAEATEASRAEA-------ETMPS-----------------EPLS---------------------------------------------------------------RFLPPA-AIGLGSGFLAGLFGVGGGTIVVPALTLATDCTHYQALATSLAAMTLPALSGTYTHYRAGNVAVRIAPALALGSFVGAYTGGKLGLQ-LDETTLRWGFSGLLTILGTEQAVG 302
BLAST of mRNA_A-nodosum_M_contig117.46.1 vs. uniprot
Match: D8LHF4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHF4_ECTSI) HSP 1 Score: 137 bits (346), Expect = 2.970e-33 Identity = 104/243 (42.80%), Postives = 132/243 (54.32%), Query Frame = 3
Query: 633 LTQHQAHGTSLGAVFATGAAGSSAYALSGQVDYEAAAAMAVAGMVASHMGARATAGMSASTLKLALGVLMITVAPLLPLRDRFFLGRTQEVQQESGELTAAGESSSTTPAVSSGKATALADKAANVADPKSSNDSSSAARKINLKAGQKVLHGGGECIKEEKYHDKGNDXXXXXXXEHEKGEGE-----GLHQHHHTWWQKLPKMFTIGLGSGFLAGVFGVGGGVVTVPAISLATDLGHKEVL 1346
LTQHQAHGTSLGAVFATGAAGS+AYAL+G VDY+AA A+AVAGM A+H GAR TAG+ ++LK+ALGVLM+ VAPL+PLRD+ + ++ + A ++A +L GGG EE GEG G+ +++ M IG GSGFLAGVFGVGGGV+TVP++SLATDLGHK+ +
Sbjct: 32 LTQHQAHGTSLGAVFATGAAGSTAYALAGHVDYQAAGAIAVAGMAAAHAGARCTAGVDGNSLKMALGVLMLAVAPLVPLRDKLSHNKGPCLRPSTA--------------------------ADDIAXXXXXXXXXXXXXXXXXXEATGLLDGGGLIPMEEG------------------GEGTSPSVPGVSS------ERVTTMLAIGAGSGFLAGVFGVGGGVLTVPSVSLATDLGHKKAV 224
BLAST of mRNA_A-nodosum_M_contig117.46.1 vs. uniprot
Match: I2CRK5_NANGC (Uncharacterized protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=I2CRK5_NANGC) HSP 1 Score: 130 bits (328), Expect = 7.010e-32 Identity = 64/132 (48.48%), Postives = 92/132 (69.70%), Query Frame = 3
Query: 1212 WQKLPKMFTIGLGSGFLAGVFGVGGGVVTVPAISLATDLGHKEVLGTSLAAMVLPALTGSATHFRQGNLMPKIALPLAVGTGLGAFLGGNYAARRLDEDTLKWGFSVIMVVLGARTISGARMAISVAAKRSR 1607
W + ++ +IG GSGFLAG+FGVGGG VT+PA+++ ++ H + LGTSLAAMV AL G+ +H QG+++ PLAVG+ G+FLGG A ++ E+ LKWGF ++MVVLG++TI A S+A S+
Sbjct: 11 WTRRLQLMSIGAGSGFLAGLFGVGGGAVTIPALTMCLEMSHYQALGTSLAAMVPTALVGTHSHHAQGHVVWSFVAPLAVGSLCGSFLGGKEIAMQIPENYLKWGFGIMMVVLGSKTIYSAGPLKSMALSASK 142
BLAST of mRNA_A-nodosum_M_contig117.46.1 vs. uniprot
Match: A0A7S1VQG5_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VQG5_9STRA) HSP 1 Score: 135 bits (341), Expect = 7.240e-32 Identity = 108/328 (32.93%), Postives = 154/328 (46.95%), Query Frame = 3
Query: 597 LIRAILRGACIHLTQHQAHGTSLGAVFATGAAGSSAYALSGQVDY------EAAAAMAVAGMVASHMGARATAGMSASTLKLALGVLMITVAPLLPLRDRFFLGRTQEVQQESGELTAAGESSSTTPAVSSGKATALADKAANVADPKSSNDSSSAARKINLKAGQKVLHGGGECIKEEKYHDKGNDXXXXXXXEHEKGEGEGLHQHHHTWWQKLPKMFTIGLGSGFLAGVFGVGGGVVTVPAISLATDLGHKEVLGTSLAAMVLPALTGSATHFRQGNLMPKIALPLAVGTGLGAFLGGNYAARRLDEDTLKWGFSVIMVVLGARTI 1562
+ L + +TQHQAHGTSL AV ATG AG+ YA SG+ D+ ++AAA+A GM+ + +GA T ++ L+ ALGV MI VAPL+P R ++Q K+T AD+ + + K+ IGLGSG+LAG+FGVGGG + VPA++L TD+ H + LGTSL AM+LPA+ G+ HF ++ +IA LA G+ +GA+ GG + DE+ L+WGF+ +MV+LGART+
Sbjct: 61 FVMVPLMTGVLRITQHQAHGTSLFAVAATGIAGALGYA-SGEGDFNDVVQWDSAAAIAACGMLTARLGAYTTVHLTEKFLQQALGVFMIGVAPLIP-------ARAWTLKQA--------------------KSTQPADE--------------------------------------------------------------------YDIYTKIVVPGAIGLGSGYLAGLFGVGGGAIVVPALALGTDMNHYQALGTSLCAMILPAVVGTYYHFASNHVQMRIAPALAAGSFVGAYCGGKIGLKT-DENVLRWGFASLMVMLGARTL 291
BLAST of mRNA_A-nodosum_M_contig117.46.1 vs. uniprot
Match: A0A7S3DRW2_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DRW2_9STRA) HSP 1 Score: 136 bits (342), Expect = 9.010e-32 Identity = 108/323 (33.44%), Postives = 155/323 (47.99%), Query Frame = 3
Query: 597 LIRAILRGACIHLTQHQAHGTSLGAVFATGAAGSSAYALSGQVDYEAAAAMAVAGMVASHMGARATAGMSASTLKLALGVLMITVAPLLPLRDRFFLGRTQEVQQESGELTAAGESSSTTPAVSSGKATALADKAANVADPKSSNDSSSAARKINLKAGQKVLHGGGECIKEEKYHDKGNDXXXXXXXEHEKGEGEGLHQHHHTWWQKLPKMFTIGLGSGFLAGVFGVGGGVVTVPAISLATDLGHKEVLGTSLAAMVLPALTGSATHFRQGNLMPKIALPLAVGTGLGAFLGGNYAARRLDEDTLKWGFSVIMVVLGARTIS 1565
+I + A + L+QHQAHGTSL AV ATG AG+ +Y V +E A+A+A+ G+ + +GAR+ + +S LK ALG+LM+T+AP + + + L +T + ES E +DS + I G E I W+++ IGL SG+LAG+FGVGGGV+ VPA++L T H E LGTSLAAMVLPA G+ TH++ N+ + A LA+G A + +E TL+WGFS ++VVLG RT++
Sbjct: 76 MIPLMTNRALLGLSQHQAHGTSLFAVTATGLAGAWSY--KDSVRFEEASAIALTGIFTARLGARSASQLSEKALKRALGMLMVTMAPAVHAKQ-YILQQTVTISTESNE-----------------------------------HDSDDTSTSI-----------GDETIL----------------------------------WKRIAPASAIGLCSGYLAGLFGVGGGVLVVPALTLFTGCDHYEALGTSLAAMVLPAAAGTLTHYQANNVAIRAAPGLALGACXXXXXXXXVAQQYTNETTLRWGFSGLLVVLGLRTLA 315
BLAST of mRNA_A-nodosum_M_contig117.46.1 vs. uniprot
Match: A0A7S4VM12_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VM12_9STRA) HSP 1 Score: 132 bits (332), Expect = 3.980e-30 Identity = 61/116 (52.59%), Postives = 88/116 (75.86%), Query Frame = 3
Query: 1215 QKLPKMFTIGLGSGFLAGVFGVGGGVVTVPAISLATDLGHKEVLGTSLAAMVLPALTGSATHFRQGNLMPKIALPLAVGTGLGAFLGGNYAARRLDEDTLKWGFSVIMVVLGARTI 1562
++L IGLGSGFLAG+FGVGGG + VPA++L+TD+ H + LGTSLAAM LPA+ G+ TH+ +GN+ ++A LA+G+ GAF+GG + +DE +L++GFS +MVVLG +T+
Sbjct: 233 ERLLPASIIGLGSGFLAGLFGVGGGAIVVPALTLSTDMTHHQALGTSLAAMTLPAIVGTVTHYGKGNVSMRVAPMLAMGSFFGAFVGGRFVGLNMDEQSLRYGFSGLMVVLGTKTL 348
BLAST of mRNA_A-nodosum_M_contig117.46.1 vs. uniprot
Match: A0A4D9CV75_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CV75_9STRA) HSP 1 Score: 132 bits (331), Expect = 4.690e-30 Identity = 120/353 (33.99%), Postives = 177/353 (50.14%), Query Frame = 3
Query: 627 IHLTQHQAHGTSLGAVFATGAAGSSAYALSGQVDYEAAAAMAVAG--------MVASHMGARATAGMSASTLKLALGVLMITVAPLLPLRDRFFLGRTQEVQQESGELTAAGESSSTTPAVSSGKATALADKAANVADPKSSNDSSSAARKINLKAGQKVLHGG--------GECIKEEKYHDKGNDXXXXXXXEHEKGEGE-----GLHQHHHTWWQKLPKMFTIGLGSGFLAGVFGVGGGVVTVPAISLATDLGHKEVLGTSLAAMVLPALTGSATHFRQGNLMPKIALPLAVGTGLGAFLGGNYAARRLDEDTLKWGFSVIMVVLGARTISGA----RMAISVA-AKRSR 1607
+ +QHQAHGTSL AV ATG+ G+ +YA +G VD+EA + G + G +A A S I+ + LR ++ + G AV SG+ +A + V ++ K G++ GG GE K E+ ++ E KG+G+ G + W ++L ++ +IG GSGFLAG+FGVGGG VT+PA+++ ++ H + LGTSLAAMV AL G+ +H QG+++ PLAVG+ G+FLGG A ++ E+ LKWGF ++MVVLG++TI A MA+S + AKRSR
Sbjct: 34 LKFSQHQAHGTSLAAVVATGSGGAISYASAGAVDWEARRGVGKGGGRCGQAWDAIGRGEGLKAPAFES------------ISFSSSSMLRAALYVAGLGMMTARMG-------------AVVSGRLSAATLQRLCV--------------RMRGKEGRRRGEGGYTGGRSRGGEGDKRER--ERNEILAFFGGNEEGKGDGKXXXKGGPSDEQNDWTRRL-QLMSIGAGSGFLAGLFGVGGGAVTIPALTMCLEMSHYQALGTSLAAMVPTALVGTHSHHVQGHVVWSFVAPLAVGSLCGSFLGGKEIAMQVPENYLKWGFGIMMVVLGSKTIYSAGPLKSMALSASKAKRSR 344
BLAST of mRNA_A-nodosum_M_contig117.46.1 vs. uniprot
Match: A0A6U2NKE9_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A6U2NKE9_9STRA) HSP 1 Score: 128 bits (322), Expect = 4.720e-29 Identity = 60/115 (52.17%), Postives = 88/115 (76.52%), Query Frame = 3
Query: 1218 KLPKMFTIGLGSGFLAGVFGVGGGVVTVPAISLATDLGHKEVLGTSLAAMVLPALTGSATHFRQGNLMPKIALPLAVGTGLGAFLGGNYAARRLDEDTLKWGFSVIMVVLGARTI 1562
KL IG+GSGFLAG+FGVGGG V VPA++++TDL H + L TSL AM LPAL+G+ TH+++GN+ ++ALPLA G+ +GA++GG + + E+ L+WGFS ++V LGA+++
Sbjct: 206 KLIPAGMIGIGSGFLAGLFGVGGGTVVVPALTVSTDLSHYQALSTSLLAMTLPALSGTFTHYQKGNVAKRVALPLAAGSFVGAYVGGKLGSN-VSEEKLRWGFSCLLVFLGAKSV 319 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig117.46.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig117.46.1 >prot_A-nodosum_M_contig117.46.1 ID=prot_A-nodosum_M_contig117.46.1|Name=mRNA_A-nodosum_M_contig117.46.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=288bp MAVAGMVASHMGARATAGMSASTLKLALGVLMITVAPLLPLRDRFFLGRTback to top mRNA from alignment at A-nodosum_M_contig117:632775..636991- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig117.46.1 ID=mRNA_A-nodosum_M_contig117.46.1|Name=mRNA_A-nodosum_M_contig117.46.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=4217bp|location=Sequence derived from alignment at A-nodosum_M_contig117:632775..636991- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig117:632775..636991- >mRNA_A-nodosum_M_contig117.46.1 ID=mRNA_A-nodosum_M_contig117.46.1|Name=mRNA_A-nodosum_M_contig117.46.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=864bp|location=Sequence derived from alignment at A-nodosum_M_contig117:632775..636991- (Ascophyllum nodosum dioecious)back to top |