mRNA_A-nodosum_M_contig117.43.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig117.43.1
Unique NamemRNA_A-nodosum_M_contig117.43.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig117.43.1 vs. uniprot
Match: B2KWI5_ECTSI (Transposase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=B2KWI5_ECTSI)

HSP 1 Score: 285 bits (729), Expect = 5.830e-86
Identity = 174/450 (38.67%), Postives = 255/450 (56.67%), Query Frame = 1
Query:    1 ISVSSIAKRLKGKVRMDASVGAGTVLTLEEEKSLEDALIWAAHRRLGVGRLELKQALTKLGNDGRLVPWDRVNGPGRKWLDLFLRRHPRLSERSCRIYEANRITADDEPRLRSFYANWKELITRLQPQPDHIWNTDETGVTPQGTKAKRVIAERGLK-----RWSVPSVLTPVKTPR*SLPSTRQGRPHHL**SSKANVCKRRGSGTVGLRGQNLPPLTPRLCRALYS*TTSRISIT-SSWRTAXXXXN--RTFSCLTATRRT*TSTLSS*P*PSILSSF-------------NCRLLL--------HMTQPLDVAAFGCFKKAVTAVLTSFPLQHGGKMPGKSDMAGVVKDAWAASFTVPQIKASFEGAGHRPVNMDRAINRLHGTGKRKARPDDRPPLADIPLAITEEELNSSLGPRAANKLQRAGHTIAGLRIATVLFGAFLKAQER 1263
            ++  S+++RL G V +DA VG  TVLT+EEE  +EDAL++AA   +G+ R  L++ + +L NDGR +PWD   GPGR WLD F +RHP LSERS RIYEANRI +DDE RL++FY ++ E + + +   DH+WNTDETG T QGTK  + IAE G K     R +    +T V T    + +        +       + K +      ++G+N PP              +R+++T SS+       N  R F      R      ++  P   +L                +  ++L        H+ QPLDV +FG FK+ +T VL++FP ++GG++P KSDM G++ DAW  SF+  Q  +SF GAG  PV+ +RA+ RL G GKRK R   RPP+ DI +AI+++ L  +LGPR   +LQ+ G  + G+ I TV+ GAF+KA+++
Sbjct:   34 VNKRSLSRRLSGDVSIDAKVGPRTVLTVEEENFVEDALLYAARHFIGIDRTALQEHVRQLCNDGRDIPWDAAVGPGRSWLDGFFKRHPALSERSARIYEANRIMSDDETRLQTFYKDFGEFVDKEKIPADHLWNTDETGSTSQGTKTMKAIAESGQKVVGAMRSNSRETVTVVVT----ISAAGATLAPWI-------IYKGQRLQADWVKGRNGPP-------------NARLAVTDSSFMQGTVFVNYIRDFHRQLLDR----GLINGTPHVLVLDGHASHVTYEVIKLARDLNIVLYQIPSHSSHVVQPLDVGSFGSFKREITKVLSAFPARNGGRVPAKSDMLGILGDAWLRSFSEQQNISSFAGAGLWPVDGERAMGRLQGVGKRKERSGARPPVEDITVAISDKNLADNLGPRTVRELQQKGQCVKGILINTVMLGAFVKAKKK 455          
BLAST of mRNA_A-nodosum_M_contig117.43.1 vs. uniprot
Match: A0A6H5L5E2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5E2_9PHAE)

HSP 1 Score: 261 bits (666), Expect = 1.960e-79
Identity = 163/423 (38.53%), Postives = 234/423 (55.32%), Query Frame = 1
Query:    1 ISVSSIAKRLKGKVRMDASVGAGTVLTLEEEKSLEDALIWAAHRRLGVGRLELKQALTKLGNDGRLVPWDRVNGPGRKWLDLFLRRHPRLSERSCRIYEANRITADDEPRLRSFYANWKELITRLQPQPDHIWNTDETGVTPQGTKAKRVIAERGLKRWSVPSVLTPVKTPR*SLPSTRQGRPHHL**SSKANVCKRRGSGTVGLRGQNLPPLTPRLCRALYS*TTSRIS-ITSSWRTAXXXXN--RTFSCLTATRRT*TSTLSS*P*PSILSSF-------------NCRLLL--------HMTQPLDVAAFGCFKKAVTAVLTSFPLQHGGKMPGKSDMAGVVKDAWAASFTVPQIKASFEGAGHRPVNMDRAINRLHGTGKRKARPDDRPPLADIPLAITEEELNSSLGPRAANKLQRAG 1197
            ++  S+++RL G   MDA VG  TVLT+EEE  +EDAL++AA   +G+ R  L++ + +L NDGR +PWD   GPGR WLD F +RHP LSERS RIYEANRI +DDE RL++FY ++ E + + +   DH+WNTDETG T QGTK  +VI E G K   V   +        ++  T       L   +   + K +      ++G+N PP              +R++ I SS+       N  R F      R      ++  P   +L                +  ++L        H+ QPLDV +FG FK+ +T VL++FP ++GG++P KSDM G++ DAW  SF+  +  +SF GAG  PV+ +RA+ RL G GKRK R   RPP+ DI  AI+++ L  +LGPR   +LQ+ G
Sbjct:   34 VNKRSLSRRLTGDESMDAKVGPRTVLTVEEESFVEDALLYAARHFIGIDRTALQEHVRQLCNDGRDIPWDAAVGPGRSWLDGFFKRHPALSERSARIYEANRIMSDDETRLQTFYKDFGEFVDKEKIPADHLWNTDETGSTSQGTKTMKVITESGQK---VGGAMRSNSRENVTVVVTISAAGATL---APWIIYKGQRLQADWVKGRNGPP-------------NARLAVIDSSFMQGTVFVNYIRDFHRQLLDR----GLINGTPHVLVLDGHASHVTYEVVKLARDLNIVLYQIPSHSSHVVQPLDVGSFGSFKREITKVLSAFPARNGGRVPAKSDMLGILGDAWLRSFSEERNTSSFAGAGLWPVDGERAMGRLQGVGKRKERSGARPPVEDITGAISDKHLADNLGPRTVRELQQKG 433          
BLAST of mRNA_A-nodosum_M_contig117.43.1 vs. uniprot
Match: A0A6H5JYX7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYX7_9PHAE)

HSP 1 Score: 261 bits (667), Expect = 7.570e-79
Identity = 167/437 (38.22%), Postives = 231/437 (52.86%), Query Frame = 1
Query:    1 ISVSSIAKRLKGKVRMDASVGAGTVLTLEEEKSLEDALIWAAHRRLGVGRLELKQALTKLGNDGRLVPWDRVNGPGRKWLDLFLRRHPRLSERSCRIYEANRITADDEPRLRSFYANWKELITRLQPQPDHIWNTDETGVTPQGTKAKRVIAERGLKRWSVPSVLTPVKTPR*SLPSTRQGRPHHL**SSKANVCKRRGSGTVGLRGQNLPPLTPRLCRALYS*TTSRISITSSWRTAXXXXNRTFSCLTATRRT*TSTLSS*P*PSILS---------------SFNCRL------LLHMTQPLDVAAFGCFKKAVTAVLTSFPLQHGGKMPGKSDMAGVVKDAWAASFTVPQIKASFEGAGHRPVNMDRAINRLHGTGKRKARPDDRPPLADIPLAITEEELNSSLGPRAANKLQRAGHTIAGLRIATVLFGAFL 1248
            IS +S+++RL G+  +DA VG GTV+T  EE +LED L++A    + +   +L + + +L NDGR +PW    GPGR WL+ FL RH R+S R  RIYE+NR+T+ ++ RL  FY  W + I   QP  DH+WNTDE+G T QGT+ +RV+AERG     V + +        ++ +T       L  +      +  G     L G   PP       A Y  T S       +        + F      R    + L   P   +L                S N  L      + H+TQPLDVA FGCFKK +  V+ +FP ++GG +P K DMAG++  AW +SFT    KASF GAG  PV+ +RA++RL    KRK    DRPPL D+P+A+T E L   +G R    L+  GHTI GLR++TV+ G FL
Sbjct:   48 ISKTSLSRRLSGECAIDARVGPGTVMTAAEEDALEDVLLYAGRNFIPLTTADLTERVRQLCNDGRPIPWTPDKGPGRSWLEGFLGRHERISLRLARIYESNRVTSAEDERLHKFYDFWGQFIDEHQPAADHVWNTDESGGTVQGTQGQRVMAERGQP---VVAQMRSTSRENCTIVTTINAAGAVLAPTIIFKGQRFNGDWVADLNG---PP------GAYYDCTESSFMCGEVF----IKYIKNFHKQLGDR----NLLDGKPHVLVLDGHASHVTLDVIKLAISLNIHLVQLPSHMSHITQPLDVAGFGCFKKELAKVIQAFPARNGGALPRKRDMAGMIGLAWGSSFTPEINKASFAGAGLWPVDRERALSRLLRP-KRKVTETDRPPLEDVPIAVTNERLEELIGDRGVRALRAKGHTITGLRVSTVVLGNFL 463          
BLAST of mRNA_A-nodosum_M_contig117.43.1 vs. uniprot
Match: A0A6H5JV04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV04_9PHAE)

HSP 1 Score: 257 bits (656), Expect = 1.560e-75
Identity = 161/445 (36.18%), Postives = 228/445 (51.24%), Query Frame = 1
Query:   13 SIAKRLKGKVRMDASVGAGTVLTLEEEKSLEDALIWAAHRRLGVGRLELKQALTKLGNDGRLVPWDRVNGPGRKWLDLFLRRHPRLSERSCRIYEANRITADDEPRLRSFYANWKELITRLQPQPDHIWNTDETGVTPQGTKAKRVIAERGLKRWSVPSVLTPVKTPR*SLPSTRQGRPHHL**SSKANVCKRRGSG---TVGLRGQNL----------PPLTPRLC---------------RALYS*TTSRISITSSWRTAXXXXNRTFSCLTATRRT*TSTLSS*P*PSILSSFNCRLLLHMTQPLDVAAFGCFKKAVTAVLTSFPLQHGGKMPGKSDMAGVVKDAWAASFTVPQIKASFEGAGHRPVNMDRAINRLHGTGKRKARPDDRPPLADIPLAITEEELNSSLGPRAANKLQRAGHTIAGLRIATVLFGAFLKAQER 1263
            S+ +RL G+V MDA VG GTV++ EEE S+ED L++A    L V RL L + +  L  D R  PWD   GPG+ WL  FL RHPR+ ER+ RIYEANR+T + EPR+  FY  W  L+  L+P+ DH+ NTDETG TPQG K  +   + G K      V+  V+       ++R+        ++        GS    T+  +GQ L          PP     C               +  +     R  I           + +   +   +      +     PS  S        H+TQPLDV AFG FK+ VT VL+ +    GG +P K D+ GV+  AW A+FT  + ++SF GAG  PVNM+RA++RL GT KR      RPPL D+P+A+  E+L   +G R   +L+ AGH   GLR++TV+ G+ ++ ++R
Sbjct:   37 SLKRRLDGEVAMDAKVGPGTVMSEEEENSIEDCLLYAGRNCLAVSRLHLLETVRLLCLD-RKTPWDPEKGPGKDWLAGFLERHPRVRERTTRIYEANRVTDESEPRIVEFYRKWAALLEDLKPEADHVHNTDETGTTPQGNKTMKAYCQAGQK------VVESVRA------NSREN-------TTLVTTISADGSTWAPTIIFKGQRLQPDWFAEKNGPPDARYTCTDSSFMQGNVFIKYLKDFHQQLCKRGLIDGKPHILLLDGHASHVSVEVIQLAMELNIVLFQLPSHTS--------HITQPLDVVAFGAFKREVTKVLSDYYRVSGGLLPQKRDVPGVIAAAWGATFTSERNRSSFAGAGLWPVNMERAMSRLRGTAKRNENQTGRPPLKDVPIAVGNEQLEQDIGERGMRQLKAAGHLTTGLRVSTVMLGSVIRQRKR 453          
BLAST of mRNA_A-nodosum_M_contig117.43.1 vs. uniprot
Match: A0A6H5L2E0_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2E0_9PHAE)

HSP 1 Score: 250 bits (639), Expect = 8.370e-75
Identity = 157/414 (37.92%), Postives = 220/414 (53.14%), Query Frame = 1
Query:   10 SSIAKRLKGKVRMDASVGAGTVLTLEEEKSLEDALIWAAHRRLGVGRLELKQALTKLGNDGRLVPWDRVNGPGRKWLDLFLRRHPRLSERSCRIYEANRITADDEPRLRSFYANWKELITRLQPQPDHIWNTDETGVTPQGTKAKRVIAERGLKRWSV-PSVLTPVKTPR*SLPSTRQGRPHHL**SSKANVCKRRGSGTVGLRGQNLPPLTPRLCRALYS*TTSRISITSSWRTAXXXXNRTFSCLTATRRT*TSTLSS*P*PSILSSFNCRLLLHMTQPLDVAAFGCFKKAVTAVLTSFPLQHGGKMPGKSDMAGVVKDAWAASFTVPQIKASFEGAGHRPVNMDRAINRLHGTGKRKARPDDRPPLADIPLAITEEELNSSLGPRAANKLQRAGHTIAGLRIATVLFGAFL 1248
            +SI  R +GKV M+A VG  T+L+ EEE SLED L++AA   L V R+ L+ A+ +L NDGR + WD   GPG+ WL  FLRRHPR++ERS RIYEANR+T D+EPR+  F+  W  L+  ++P  +H+ NTDET    +   A  V+A       ++ P+++   +  +    + R G             C    +G+  ++G           + L      R  +           + +   +  ++      + S   PS  S        H+TQPLDV AFG FKK+VT VL SF    GG +P K DM GV+ DAW  SF     K+SF GAG  PVN +RA+ +L GT  +K R D+RPPL D+P+A   E+L   +G RA   L+  GHT+ G+R  TVL    L
Sbjct:   15 TSIEDRRRGKVAMNAKVGPETILSNEEEDSLEDILLFAARNFLAVDRVHLRDAVRRLCNDGRRIIWDPDEGPGKDWLAGFLRRHPRVAERSTRIYEANRMTEDEEPRMVQFHERWAALLDEVKPAANHVHNTDETAGCSREPAATNVVANISADDHTLAPTIIFKGQRLQTDWFAERNGP------EGARYTC----TGSSFMQGDVFIAYLKDFHKQLGD----RGLLDGKPHILLLDGHASHVSVEVSKLAMNLKIISFQLPSHTS--------HITQPLDVVAFGRFKKSVTRVLASFYHNSGGSLPLKRDMPGVIADAWKLSFAPEINKSSFAGAGLWPVNKERALGQLKGTANKKERRDERPPLQDVPIAALNEQLEIDIGERALRVLKGQGHTVTGIREGTVLLDGLL 406          
BLAST of mRNA_A-nodosum_M_contig117.43.1 vs. uniprot
Match: A0A6H5JK80_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK80_9PHAE)

HSP 1 Score: 254 bits (649), Expect = 8.790e-75
Identity = 167/454 (36.78%), Postives = 248/454 (54.63%), Query Frame = 1
Query:    1 ISVSSIAKRLKGKVRMDASVGAGTVLTLEEEKSLEDALIWAAHRRLGVGRLELKQALTKLGNDGRLVPWDRVNGPGRKWLDLFLRRHPRLSERSCRIYEANRITADDEPRLRSFYANWKELI---------TRLQPQPDHIWNTDETGVTPQGTKAKRVIAERGLKRWSVPSVLTPVKTPR*SLPSTRQGRPHHL**SSKANVCKRRGSGTVGLRGQNLPPLTPRLCRALYS*TTSRISIT-SSWRTAXXXXN--RTFSCLTATRRT*TSTLSS*P*PSILSSF-------------NCRLLL--------HMTQPLDVAAFGCFKKAVTAVLTSFPLQHGGKMPGKSDMAGVVKDAWAASFTVPQIKASFEGAGHRPVNMDRAINRLHGTGKRKARPDDRPPLADIPLAITEEELNSSLGPRAANKLQRAGHTIAGLRIATVLFGAFLKAQER 1263
            ++  S+++RL G V MDA VG  TVLT+EEE  +EDAL++AA   +G+ R  L++ + +L NDGR + WD   GPGR WLD F +RHP LSERS RIYEANRI +DDE  L++FY ++ E +         T+++ +   +      G TPQGTK  +VIAE G K   V   +        ++  T       L   +   + K +      ++G+N PP              +R+++T SS+       N  R F      R      ++  P   +L                +  ++L        H+ QPLDV +FG FK  +T VL++FP ++GG++P KSDM G++ DAW  SF+  Q  +SF GAG  PV+ +RA+ RL G GKRK R   RPP+ DI +AI++++L  +LGPR   +LQ+ G  + G+ I TV+ GAF+KA+++
Sbjct:   34 VNKRSLSRRLSGDVSMDAKVGPRTVLTVEEENFVEDALLYAARHFIGIDRTALQEHVRQLCNDGRDISWDAAVGPGRSWLDGFFKRHPALSERSARIYEANRIMSDDETCLQTFYKDFGEFVDKENIPTCGTQMRQEYTDLERA-VPGSTPQGTKTMKVIAESGQK---VVGAMRSNSRDNVTVVVTISAAGATL---APWIIYKGQRMQADWVKGRNGPP-------------NARLAVTDSSFMQGTVFVNYIRDFHRQLLDR----GLINGTPHVLVLDGHASHVTYEVVKLARDLNIVLYQIPSHSSHVVQPLDVGSFGSFKWEITKVLSAFPARNGGRVPAKSDMLGILGDAWLRSFSEEQNISSFAGAGLWPVDGERAMGRLQGVGKRKERSGARPPVEDITVAISDKDLADNLGPRTVRELQQKGQCVKGILINTVMLGAFVKAKKK 463          
BLAST of mRNA_A-nodosum_M_contig117.43.1 vs. uniprot
Match: A0A6H5L1T0_9PHAE (Uncharacterized protein n=8 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1T0_9PHAE)

HSP 1 Score: 256 bits (655), Expect = 3.780e-74
Identity = 166/439 (37.81%), Postives = 233/439 (53.08%), Query Frame = 1
Query:    1 ISVSSIAKRLKGKVRMDASVGAGTVLTLEEEKSLEDALIWAAHRRLGVGRLELKQALTKLGNDGRLVPWDRVNGPGRKWLDLFLRRHPRLSERSCRIYEANRITADDEPRLRSFYANWKELITRLQPQPDHIWNTDETGVTPQGTKAKRVIAERGLKRWSVPSVLTPVKTPR*SLPSTRQGRPHHL**SSKANVCKRRGSGTVGLRGQNLPPLTPR----LCRALYS*TTSRISITSSWRTAXXXXNRTF--------SCLTATRRT*TSTLSS*P*PSILSSFNCRLLL------HMTQPLDVAAFGCFKKAVTAVLTSFPLQHGGKMPGKSDMAGVVKDAWAASFTVPQIKASFEGAGHRPVNMDRAINRLHGTGKRKARPDDRPPLADIPLAITEEELNSSLGPRAANKLQRAGHTIAGLRIATVLFGAFLKAQER 1263
            + ++S+  R+K KV +DA VG GTVL+ EEE  +ED LI+A+   L +GR EL+ A+  +  DGR VPWD   GPG  WL+ F+ RHP LSER+  IYEANRI  D EPRL++FY  W E +   +  P+ I NTDET  TPQGTK+ + I  RG K   VP           ++ +T     H                 T+  +GQ + P   +    +  A Y+ T S    +  +        +          + L        +T  +    S+  S +  L        H+TQPLDV  FG FK  +T VLT++PL++GG+ P K DMAGV+ +AWA SFT    KA+F+G+G  PV+M++AINRLH   KRK R  DRP   D+ +  ++++L   LG  A  +L+R G  I GLR+ TV  G   +  +R
Sbjct:   48 LPLASLHDRVKNKVAIDARVGPGTVLSKEEEDFVEDVLIYASRHFLLLGRRELRDAVRNICTDGRKVPWDPDKGPGDSWLEGFMARHPGLSERATHIYEANRINEDGEPRLQAFYKAWAEYLEETKLPPERILNTDETSSTPQGTKSGKAIVARGTK---VPGARRSNSRENTTVVATIGADGHTF-------------HPTIIFKGQRMQPAWIQDNNGVPDAKYTVTESSFIQSHVFLDYLRDLRKQLDARGLLGKAALVLDGHASHTTFDA---ISLGISLDMDLFQLPSHTSHITQPLDVGTFGTFKMEITKVLTAYPLKNGGRSPVKRDMAGVIAEAWAGSFTPENNKAAFKGSGLWPVSMEKAINRLHS--KRKQRDHDRPIREDLAVVASKDQLERDLGRAALLELKRHGLMIEGLRVNTVFLGGLTRLTKR 465          
BLAST of mRNA_A-nodosum_M_contig117.43.1 vs. uniprot
Match: A0A6H5JJ12_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ12_9PHAE)

HSP 1 Score: 257 bits (656), Expect = 9.270e-74
Identity = 161/445 (36.18%), Postives = 228/445 (51.24%), Query Frame = 1
Query:   13 SIAKRLKGKVRMDASVGAGTVLTLEEEKSLEDALIWAAHRRLGVGRLELKQALTKLGNDGRLVPWDRVNGPGRKWLDLFLRRHPRLSERSCRIYEANRITADDEPRLRSFYANWKELITRLQPQPDHIWNTDETGVTPQGTKAKRVIAERGLKRWSVPSVLTPVKTPR*SLPSTRQGRPHHL**SSKANVCKRRGSG---TVGLRGQNL----------PPLTPRLC---------------RALYS*TTSRISITSSWRTAXXXXNRTFSCLTATRRT*TSTLSS*P*PSILSSFNCRLLLHMTQPLDVAAFGCFKKAVTAVLTSFPLQHGGKMPGKSDMAGVVKDAWAASFTVPQIKASFEGAGHRPVNMDRAINRLHGTGKRKARPDDRPPLADIPLAITEEELNSSLGPRAANKLQRAGHTIAGLRIATVLFGAFLKAQER 1263
            S+ +RL G+V MDA VG GTV++ EEE S+ED L++A    L V RL L + +  L  D R  PWD   GPG+ WL  FL RHPR+ ER+ RIYEANR+T + EPR+  FY  W  L+  L+P+ DH+ NTDETG TPQG K  +   + G K      V+  V+       ++R+        ++        GS    T+  +GQ L          PP     C               +  +     R  I           + +   +   +      +     PS  S        H+TQPLDV AFG FK+ VT VL+ +    GG +P K D+ GV+  AW A+FT  + ++SF GAG  PVNM+RA++RL GT KR      RPPL D+P+A+  E+L   +G R   +L+ AGH   GLR++TV+ G+ ++ ++R
Sbjct:  278 SLKRRLDGEVAMDAKVGPGTVMSEEEENSIEDCLLYAGRNCLAVSRLHLLETVRLLCLD-RKTPWDPEKGPGKDWLAGFLERHPRVRERTTRIYEANRVTDESEPRIVEFYRKWAALLEDLKPEADHVHNTDETGTTPQGNKTMKAYCQAGQK------VVESVRA------NSREN-------TTLVTTISADGSTWAPTIIFKGQRLQPDWFAEKNGPPDARYTCTDSSFMQGNVFIKYLKDFHQQLCKRGLIDGKPHILLLDGHASHVSVEVIQLAMELNIVLFQLPSHTS--------HITQPLDVVAFGAFKREVTKVLSDYYRVSGGLLPQKRDVPGVIAAAWGATFTSERNRSSFAGAGLWPVNMERAMSRLRGTAKRNENQTGRPPLKDVPIAVGNEQLEQDIGERGMRQLKAAGHLTTGLRVSTVMLGSVIRQRKR 694          
BLAST of mRNA_A-nodosum_M_contig117.43.1 vs. uniprot
Match: A0A6H5JGP6_9PHAE (DDE-1 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGP6_9PHAE)

HSP 1 Score: 239 bits (611), Expect = 1.270e-69
Identity = 168/488 (34.43%), Postives = 242/488 (49.59%), Query Frame = 1
Query:   70 TVLTLEEEKSLEDALIWAAHRRLGVGRLELKQALTKLGNDGRLVPWDRVNGPGRKWLDLFLRRHPRLSERSCRIYEANRITADDEPRLRSFYANWKELITRLQPQPDHIWNTDETGVTPQGTKAKRVIAERGLK---------RWSVPSVLTPVKTPR*SLPSTRQGRPHHL**SSKANVCKRRGSGTVGLRGQNLPPLTPRLCRALYS*TTSRISIT-SSWRTAXXXXN--RTFSCLTATRRT*TSTLSS*P*PSILSSF-------------NCRLLL--------HMTQPLDVAAFGCFKKAVTAVLTSFPLQHGGKMPGKSDMAGVVKDAWAASF-------------------------------------TVP--------------------QIKASFEGAGHRPVNMDRAINRLHGTGKRKARPDDRPPLADIPLAITEEELNSSLGPRAANKLQRAGHTIAGLRIATVLFGAFLKAQER 1263
            TVLT+E E  +EDAL++AA   +G+ R  L++ + +L NDGR +PWD   GPGR WLD F +RHP LSE S RIYEANRI +DDE RL++FY ++ E + + +   DH+WNTDETG TPQGTK  +VIAE G K         R +V  V+T + T   +L              +   + K +       +G+N PP              +R+++T SS+       N  R F      R      ++  P   +L                +  ++L        H+ QPLDV +FG FK+ +  VL++F  ++GG++P KSDM G++ DAW  SF                                     TVP                    Q  +SF GAG  PV+ +RA+ RL G GKRK R   RPP+ DI +AI++++L  +LGPR   +LQ+ G  + G+ I TV+ GAF+KA+++
Sbjct:   16 TVLTVEGENFVEDALLYAARHFIGIDRAALQEHVRQLCNDGRDIPWDAAVGPGRSWLDGFFKRHPALSECSARIYEANRIMSDDETRLQTFYKDFGEFVDKEKIPADHLWNTDETGSTPQGTKTMKVIAESGQKVVGAIHSKSRENVTVVVT-ISTVGATL--------------APWIIYKGQRLQADWAKGRNAPP-------------NARLAVTNSSFMQGIVFVNYIRDFHRQLLDR----GLINGTPHVLVLDGHASHVTYEVVKLARDLNIVLYQIPSHSSHVVQPLDVGSFGSFKREIPKVLSAFQARNGGRVPAKSDMLGLLGDAWLRSFSEEQNISSFAGAGLWLVDGERAMGQLQGWRFPTRILPTVPAKSDMLGILGDAWLRSFSEEQNISSFAGAGLWPVDGERAMGRLQGVGKRKERSGARPPVEDITVAISDKDLADNLGPRTVRELQQKGQCVKGILINTVMVGAFVKAKKK 471          
BLAST of mRNA_A-nodosum_M_contig117.43.1 vs. uniprot
Match: A0A6H5JS97_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS97_9PHAE)

HSP 1 Score: 234 bits (596), Expect = 7.640e-67
Identity = 154/439 (35.08%), Postives = 218/439 (49.66%), Query Frame = 1
Query:   10 SSIAKRLKGKVRMDASVGAGTVLTLEEEKSLEDALIWAAHRRLGVGRLELKQALTKLGNDGRLVPWDRVNGPGRKWLDLFLRRHPRLSERSCRIYEANRITADDEPRLRSFYANWKELITRLQPQPDHIWNTDETGVTPQ-GTKAKRVIAERGLKRWSVPSVLTPVKTPR*SLPSTRQGRPHHL**SSKANVCKRRGSGTVGLRGQNLPPLTPRLCRALYS*TTSRISITSSWRTAXXXXNRTFSCLTATRRT*TSTLSS*P*PSILS---------------SFNCRL------LLHMTQPLDVAAFGCFKKAVTAVLTSFPLQHGGKMPGKSDMAGVVKDAWAASFTVPQIKASFEGAGHRPVNMDRAINRLHGTGKRKARPDDRPPLADIPLAITEEELNSSLGPRAANKLQRAGHTIAGLRIATVLFGAFLKAQE 1260
            SS+ +RL G   MDA VG GTV+T  EE +++  L++A    + +   +L + +++L NDGR +PW+   GPG+ WL  FL RH  +S R  RIYE+NR+T+ ++ RL  FY  W E +   +P  DHIWNTDE+G     GT A    A+      +  +++T +      L  T               + K +      +  Q+ PP     C              SS+                 R+   + L   P   +L                S N  L      + H+TQPLDVA FGCFKK +T  + +FP  HGG +P K DMA V+  AW+ SFT    KASF GAG  PV+ +RA++RL    KRK R  DRPPL D+P+A++ + L   LG RA  KL   GHT+ GLR++TV  G +L ++ 
Sbjct:   51 SSLQRRLDGNCAMDARVGPGTVMTKAEEDAVKYLLLYAGRNFIPLTTADLTERVSRLCNDGRPIPWNSDKGPGKDWLKGFLGRHEGISHRLARIYESNRVTSSEDERLHKFYGFWAEFLGEHRPAADHIWNTDESGTAGLCGTGAAGGPADAFHFAENC-TIVTTINAAGAVLAPTI--------------IFKGQRFNEDWIVDQDGPPGATYTCTE------------SSFMCGDVFIKYIMDFHEQLRKR--NLLDGKPHVLVLDGHASHVSLEVVELARSLNIHLVQLPSHMSHITQPLDVAGFGCFKKELTKAIQAFPATHGGALPRKRDMASVIGQAWSTSFTPDINKASFAGAGLWPVDKERALSRLLKP-KRKERETDRPPLQDVPIAVSNDRLEELLGERAVRKLLGEGHTLTGLRVSTVFLGDYLPSKR 459          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig117.43.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
B2KWI5_ECTSI5.830e-8638.67Transposase n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A6H5L5E2_9PHAE1.960e-7938.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYX7_9PHAE7.570e-7938.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JV04_9PHAE1.560e-7536.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L2E0_9PHAE8.370e-7537.92DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JK80_9PHAE8.790e-7536.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L1T0_9PHAE3.780e-7437.81Uncharacterized protein n=8 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJ12_9PHAE9.270e-7436.18Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JGP6_9PHAE1.270e-6934.43DDE-1 domain-containing protein (Fragment) n=1 Tax... [more]
A0A6H5JS97_9PHAE7.640e-6735.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig117contigA-nodosum_M_contig117:544230..545802 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog7091.BGIBMGA000981-TA
Model size1264
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.81e-11
EggNOG OGs2EKEE@1|root,2SQBK@2759|Eukaryota,3AKQY@33154|Opisthokonta,3C0X4@33208|Metazoa,3DGMT@33213|Bilateria,422K5@6656|Arthropoda,3SXKD@50557|Insecta,4489P@7088|Lepidoptera
Cds size474
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866578.0372627-UTR-A-nodosum_M_contig117:544229..5442741680866578.0372627-UTR-A-nodosum_M_contig117:544229..544274Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig117 544230..544274 +
1680866578.0737119-UTR-A-nodosum_M_contig117:545057..5458021680866578.0737119-UTR-A-nodosum_M_contig117:545057..545802Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig117 545058..545802 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866578.052606-CDS-A-nodosum_M_contig117:544274..5446441680866578.052606-CDS-A-nodosum_M_contig117:544274..544644Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig117 544275..544644 +
1680866578.0618904-CDS-A-nodosum_M_contig117:544953..5450571680866578.0618904-CDS-A-nodosum_M_contig117:544953..545057Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig117 544954..545057 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig117.43.1prot_A-nodosum_M_contig117.43.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig117 544275..545057 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig117.43.1

>prot_A-nodosum_M_contig117.43.1 ID=prot_A-nodosum_M_contig117.43.1|Name=mRNA_A-nodosum_M_contig117.43.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=158bp
MDASVGAGTVLTLEEEKSLEDALIWAAHRRLGVGRLELKQALTKLGNDGR
LVPWDRVNGPGRKWLDLFLRRHPRLSERSCRIYEANRITADDEPRLRSFY
ANWKELITRLQPQPDHIWNTDETGVTPQGTKAKRVIAERGLKRWSVPSVL
TPVKTPR*
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mRNA from alignment at A-nodosum_M_contig117:544230..545802+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig117.43.1 ID=mRNA_A-nodosum_M_contig117.43.1|Name=mRNA_A-nodosum_M_contig117.43.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1573bp|location=Sequence derived from alignment at A-nodosum_M_contig117:544230..545802+ (Ascophyllum nodosum dioecious)
ATTTCTGTGAGCTCAATCGCCAAGCGCTTGAAGGGCAAAGTGAGGATGGA TGCATCAGTTGGCGCTGGTACAGTTCTTACCCTGGAAGAGGAAAAATCAC TAGAAGACGCCTTGATTTGGGCGGCACATCGACGCCTCGGAGTTGGTCGA TTAGAGCTCAAACAAGCGCTAACGAAGCTGGGCAACGACGGCCGGCTTGT ACCTTGGGATCGTGTAAATGGTCCTGGGCGAAAGTGGTTGGATCTCTTCC TCAGGCGGCACCCGCGACTCTCGGAGCGCAGCTGCCGCATCTACGAAGCG AACCGTATTACCGCTGACGATGAACCGCGACTGAGGTCATTTTATGCCAA TTGGAAGGAGCTCATCACCAGGCTGCAGCCGCAGCCGGATCATATCTGGA ATACAGACGAGACAGGTGCGTTGACCGTAGAACCAGCGCAGGTACTCCCT GCCTCCCTGTGCAGTAGTGTACAACAGAACACCATAGTTCCCTGGTTCCC TGTACAGCAGTCTGCAACAGCACAACACATTGTCTCCCCCCTTGTTGGAC TGTTTGCTATTAATAGTAAGTGGTGCTGCCTGCACTGCCGTGACATGTGT CAGTAGAGCCTAAAATGTGTGCTGTCTGTTTTGCTTGGCCTGCACTGCTG TTTGCCTTGCCATGTGAAAACATGTCGTGTTCTGCACTTGACCTCTACAC AAATCCACACGCACATTTGTGCAGGTGTTACGCCGCAAGGCACCAAAGCA AAGCGAGTCATCGCTGAGAGGGGGCTCAAAAGGTGGTCGGTACCAAGCGT TCTAACTCCCGTGAAAACACCACGGTAGTCGCTACCATCAACGCGGCAGG GACGGCCACACCACCTCTGATAATCTTCAAAGGCCAACGTGTGCAAGCGG CGTGGCTCGGGAACGGTGGGCCTCCGGGGTCAAAATTTGCCGCCACTGAC TCCTCGTTTATGCAGGGCGCTGTATTCGTGAACTACATCACGGATTTCCA TAACTTCATCGTGGAGAACGGCttGGCGGACGGCAAACCGCACATTCTCG TGCTTGACGGCCACGCGTCGCACGTGAACCTCGACGTTATCCAGCTAGCC ATGACCCTCAATATTGAGCTCTTTCAACTGCCGTCTCCTCCTCCACATGA CCCAGCCTTTAGATGTAGCGGCTTTCGGGTGTTTCAAGAAGGCAGTGACC GCGGTcCTCACAAGCTTTCCGCTTCAGCACGGTGGTAAGATGCCGGGGAA ATCCGACATGGCCGGGGTGGTCAAGGATGCGTGGGCGGCGAGCTTTACGG TGCCACAGATCAAGGCTTCATTCGAGGGAGCAGGCCACAGGCCTGTGAAC ATGGACCGGGCGATCAACAGGCTTCACGGAACGGGGAAGAGAAAAGCTCG CCCGGACGATCGCCCGCCGCTGGCCGACATTCCCCTGGCGATCACGGAGG AAGAGTTGAATTCTTCGCTCGGCCCGCGTGCCGCGAACAAGCTCCAGCGC GCCGGCCACACTATTGCTGGTCTGAGGATCGCGACTGTTCTCTTCGGTGC TTTTCTGAAGGCGCAAGAGCGAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig117:544230..545802+

>mRNA_A-nodosum_M_contig117.43.1 ID=mRNA_A-nodosum_M_contig117.43.1|Name=mRNA_A-nodosum_M_contig117.43.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=474bp|location=Sequence derived from alignment at A-nodosum_M_contig117:544230..545802+ (Ascophyllum nodosum dioecious)
ATGGATGCATCAGTTGGCGCTGGTACAGTTCTTACCCTGGAAGAGGAAAA
ATCACTAGAAGACGCCTTGATTTGGGCGGCACATCGACGCCTCGGAGTTG
GTCGATTAGAGCTCAAACAAGCGCTAACGAAGCTGGGCAACGACGGCCGG
CTTGTACCTTGGGATCGTGTAAATGGTCCTGGGCGAAAGTGGTTGGATCT
CTTCCTCAGGCGGCACCCGCGACTCTCGGAGCGCAGCTGCCGCATCTACG
AAGCGAACCGTATTACCGCTGACGATGAACCGCGACTGAGGTCATTTTAT
GCCAATTGGAAGGAGCTCATCACCAGGCTGCAGCCGCAGCCGGATCATAT
CTGGAATACAGACGAGACAGGTGTTACGCCGCAAGGCACCAAAGCAAAGC
GAGTCATCGCTGAGAGGGGGCTCAAAAGGTGGTCGGTACCAAGCGTTCTA
ACTCCCGTGAAAACACCACGGTAG
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