mRNA_A-nodosum_M_contig117.30.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig117.30.1
Unique NamemRNA_A-nodosum_M_contig117.30.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig117.30.1 vs. uniprot
Match: A0A6H5JIS8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIS8_9PHAE)

HSP 1 Score: 209 bits (533), Expect = 1.080e-56
Identity = 131/352 (37.22%), Postives = 192/352 (54.55%), Query Frame = 1
Query:   46 AVAGKPFTRRRDSASLLFECFLQSRVAGGPEHMVMAQFNDVVTFLCWLATCSEKRRTAVHTRDCEAVGTSELSNCSTTEERCTLRYAHDSLGTNYVSKLAMAYERDLGVTHDWNSALRTGNPVRSDLVTQYMAFIREEQKQAGVEVSQAPAMLHSHLTAIITHMTLRIRCTQDPYDRIVFDRDIALFTVAFSTLKRGDGLSRTLIQRILRLPNECGFLFNFQWGKTMRDGTDHLKTVEYDTKRMTTCPIRGVEQYIAAGTALGWNMTQGYLFPRISRRPNTGAPIRGKTPISAPDMTKALKVHSRNAGERTAFTMPSFRSGGALTRALAGEDLPTVMQRAFCKKPSTAWRYL 1101
            A++G+    R+   +  F+ FL S  +GG +  V A  +DVV +  +L +   K    VH   C  VG+S+  +CS     C  RY  +SL   + SKL MAY+  LG   DWN  + +GNP  S  V  Y+ F  EEQK+ GV   QA  +L   L  ++ HM LR   +    +RI   RD+ALF++A  +++RG  LS TL  ++LRLP   GF+FNF +GKT+R  T+ +  V   T R   C +R V +YI A   +GW+++ GYLFP +    + G+  RG + + A  MT +L+ H R A     F+M SFR GG+L+R++ G  +  +MQ    K  S A  Y+
Sbjct:  682 AMSGRAGEVRKHRVADEFDLFLLS-YSGGGKGWVHASPDDVVDWFSYLDS-QGKGTKLVHDATCAGVGSSDRRSCSP-GATCKKRYGAESLRKGFYSKLKMAYKEQLGRGDDWNPTVGSGNPCASPTVDAYLTFTTEEQKRVGVTAKQAAPLLEDTLGELLPHMRLRALASDSMAERIAITRDVALFSLAHHSMRRGFDLSFTLGSQVLRLPESRGFIFNFLFGKTLRASTEAI-VVLASTNR-DVCAVRAVAEYILAAQQVGWDLSSGYLFPSVL---DDGS--RGNSKLVATQMTSSLQAHLRAASLPAHFSMHSFRVGGSLSRSMGGSAIEEIMQIGGWKTESMAKYYV 1023          
BLAST of mRNA_A-nodosum_M_contig117.30.1 vs. uniprot
Match: A0A6H5KRN9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRN9_9PHAE)

HSP 1 Score: 167 bits (423), Expect = 5.180e-42
Identity = 96/244 (39.34%), Postives = 135/244 (55.33%), Query Frame = 1
Query:  139 HMVMAQFNDVVTFLCWLATCSEKRRTAVHTRDCEAVGTSELSNCSTTEERCTLRYAHDSLGTNYVSKLAMAYERDLGVTHDWNSALRTGNPVRSDLVTQYMAFIREEQKQAGVEVSQAPAMLHSHLTAIITHMTLRIRCTQDPYDRIVFDRDIALFTVAFSTLKRGDGLSRTLIQRILRLPNECGFLFNFQWGKTMRDGTDHLKTVEYDTKRMTTCPIRGVEQYIAAGTALGWNMTQGYLFPRI 870
            H   A   DV  +LC+L T     +  VH R C  VG +   +C      C  RYA  S+    VSKL MA +  LG    W+ A R+GNP  S LV  Y+ F  EEQK+ GV V+QA AML   L  ++  M  R +      +RI   RD+ALF++AF+ ++RG  LS T+  ++L+LP   G +FNFQ+GKT+RD  D +  V  D    + C +  V  YI+A   +GW+++QG+LFP +
Sbjct:  711 HAHAASDRDVFDYLCFLDTQGSGTKW-VHDRACPGVGATHGRDCLP-NSTCAKRYAAASMQKGIVSKLKMAMQEQLGKERSWDPATRSGNPCSSPLVDSYLVFTGEEQKRVGVAVNQAEAMLPHVLIDLLRDMRSRAQTASSLAERIELTRDVALFSLAFAPMRRGHDLSFTMGSQVLQLPAGQGLIFNFQFGKTLRDSVDAV-VVSPDVACPSICAVSNVTGYISAAERIGWDLSQGHLFPVV 951          
BLAST of mRNA_A-nodosum_M_contig117.30.1 vs. uniprot
Match: UPI001600D44B (uncharacterized protein LOC118418849 n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI001600D44B)

HSP 1 Score: 134 bits (337), Expect = 1.190e-31
Identity = 96/373 (25.74%), Postives = 164/373 (43.97%), Query Frame = 1
Query:    1 IDESAIEQRFAQFTKAVAGKPFTRRRDSASLLFECFLQSRVAGGPEHMVMAQFNDVVTFLCWLATCSEKRRTAVHTRDCEAVGTSELSNCSTTEERCTLRYAHDSLGTNYVSKLAMAYERDLGVTHDWNSALRTGNPVRSDLVTQYMAFIREEQKQAGVEVSQAPAMLHSHLTAIITHMTLRIRCTQDPYDRI-VFDRDIALFTVAFSTLKRGDGLSRTLIQRILRLPNECGFLFNFQWGKTMRDGTDHLKTVEYDTKRMTTCPIRGVEQYIAAGTALGWNMTQGYLFPRISRRPNTGAPIRGKTPISAPDMTKALKVHSRNAGERTAFTMPSFRSGGALTRALAGEDLPTVMQRAFCKKPSTAWRYLRLMEV 1116
            +D+  I+ R  +  K      + +++ +       FL +R    P+ +  A   DV +FL W     E  +T VH    +  G    S C      C  R A  ++ +  + +L   + +  G   +WN A+  GNP  +  V +Y+   + EQ  A ++ +QA  + H  L A+ TH+ +++R  +    ++    RD A F   F    R   L R   + +  LP   G LFN  +GKT+RDGT +   +    +    CP+RG++ Y    TALG N+++GYLF  +++            P S        K +          T+   R+  A+T A+ G     +M     ++ +TA RY++L +V
Sbjct:   61 VDDDKIQARLEEINKLAVSSDYGKKKAALENELRNFLGNR--SPPKDLTTASPKDVCSFLVWK---DEGGKTIVHKTGGKNFGEKRKSGCG-----CPKRLAAGTVDS-VIGQLRSIFTKS-GRGGEWNDAICAGNPAVAPRVAEYLRITKAEQANALIQPTQAQPVFHDKLEALCTHIAVKLRDPKTKESKLFTLARDQAFFKAMFFGADRAADLGRCKSEELAWLPEGEGILFNHTFGKTLRDGTANTFPI-LANENSAICPVRGLQAYFTMATALGINLSKGYLFRAMNKSKEVV-----NEPFSYDAAQSRFKEYLIKINRYEGDTLHGLRTASAITIAMGGASQSALMAHVGWREKATAQRYMQLRKV 415          
BLAST of mRNA_A-nodosum_M_contig117.30.1 vs. uniprot
Match: UPI0009E55734 (uncharacterized protein LOC110054368 n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E55734)

HSP 1 Score: 119 bits (297), Expect = 3.990e-27
Identity = 75/210 (35.71%), Postives = 111/210 (52.86%), Query Frame = 1
Query:  436 YMAFIREEQKQAGVEVSQAPAMLHSHLTAIITHMTLRIRCTQDPYDRIVFDRDIALFTVAFSTLKRGDGLSRTLIQRILRLPNECGFLFNFQWGKTMRDGTDHLKTVEYDTKRMTTCPIRGVEQYIAAGTALGWNMTQGYLFPRISRRPNTGAPIRGKTPISAPDMTKA-LKVHSRNAGERTAFTMPSFRSGGALTRALAGEDLPTVMQR 1062
            ++  +  EQ QA V   QA       LT + +H+  R+R +    DR V  RD +   + F + +R  GL +  +  ILR PN+ GFLFN  WGKT+RDG +++  V  + +    CP+RG+E+Y+     +  ++T GYLF  I+  P+ G      T  +A    K  LK  + + GE    T+  FRSG A+T ALAG DL  +M R
Sbjct:  103 FLRLVTTEQLQAQVTPKQATPFFVDKLTQLCSHLDRRLRDSDRAIDRFVIARDQSYIKLVFFSGERPGGLGQIKVLEILRFPNDDGFLFNHNWGKTLRDGEENVFGVRRNAQA-EICPVRGIERYMEVTRDIRVDLTCGYLFRPIA--PDLGIKDAPFTSSAAESRLKGYLKEMNADNGE----TLHGFRSGCAITLALAGADLAEIMDR 305          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig117.30.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JIS8_9PHAE1.080e-5637.22Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KRN9_9PHAE5.180e-4239.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI001600D44B1.190e-3125.74uncharacterized protein LOC118418849 n=1 Tax=Branc... [more]
UPI0009E557343.990e-2735.71uncharacterized protein LOC110054368 n=1 Tax=Orbic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig117contigA-nodosum_M_contig117:382845..383975 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog7739.XP_002592500.1
PFAMsDUF640
Model size1131
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue9.69e-24
EggNOG OGsKOG0297@1|root,KOG0297@2759|Eukaryota,3AMDY@33154|Opisthokonta,3C0VI@33208|Metazoa
DescriptionProtein of unknown function (DUF640)
Cds size1131
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866577.596071-CDS-A-nodosum_M_contig117:382844..3839751680866577.596071-CDS-A-nodosum_M_contig117:382844..383975Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig117 382845..383975 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig117.30.1prot_A-nodosum_M_contig117.30.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig117 382845..383975 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig117.30.1

>prot_A-nodosum_M_contig117.30.1 ID=prot_A-nodosum_M_contig117.30.1|Name=mRNA_A-nodosum_M_contig117.30.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=377bp
IDESAIEQRFAQFTKAVAGKPFTRRRDSASLLFECFLQSRVAGGPEHMVM
AQFNDVVTFLCWLATCSEKRRTAVHTRDCEAVGTSELSNCSTTEERCTLR
YAHDSLGTNYVSKLAMAYERDLGVTHDWNSALRTGNPVRSDLVTQYMAFI
REEQKQAGVEVSQAPAMLHSHLTAIITHMTLRIRCTQDPYDRIVFDRDIA
LFTVAFSTLKRGDGLSRTLIQRILRLPNECGFLFNFQWGKTMRDGTDHLK
TVEYDTKRMTTCPIRGVEQYIAAGTALGWNMTQGYLFPRISRRPNTGAPI
RGKTPISAPDMTKALKVHSRNAGERTAFTMPSFRSGGALTRALAGEDLPT
VMQRAFCKKPSTAWRYLRLMEVLIPGS
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mRNA from alignment at A-nodosum_M_contig117:382845..383975+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig117.30.1 ID=mRNA_A-nodosum_M_contig117.30.1|Name=mRNA_A-nodosum_M_contig117.30.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1131bp|location=Sequence derived from alignment at A-nodosum_M_contig117:382845..383975+ (Ascophyllum nodosum dioecious)
ATAGACGAATCCGCCATTGAACAACGATTTGCCCAGTTCACGAAAGCCGT GGCGGGGAAACCATTCACACGCCGACGGGACTCCGCCAGCCTACTATTCG AATGTTTCTTGCAATCCAGAGTAGCGGGAGGCCCAGAGCACATGGTAATG GCCCAATTCAACGATGTAGTAACCTTCCTATGCTGGCTAGCCACCTGTTC AGAGAAGAGACGTACAGCGGTCCACACTAGGGACTGCGAAGCAGTCGGTA CATCAGAACTGTCAAACTGCTCAACGACGGAAGAGAGGTGTACCCTACGA TACGCACACGACTCTTTGGGGACGAATTACGTTTCCAAGCTCGCCATGGC TTACGAACGAGATCTGGGGGTAACACACGACTGGAATAGTGCACTGAGGA CGGGCAACCCGGTCAGAAGCGATTTAGTCACGCAATACATGGCCTTCATA AGGGAGGAGCAGAAGCAGGCAGGAGTCGAAGTATCACAAGCACCTGCAAT GCTTCACAGCCACCTCACGGCAATTATTACACACATGACACTCCGCATAC GGTGCACACAGGACCCCTATGACAGGATAGTTTTCGACAGGGATATCGCT CTATTTACGGTAGCGTTTAGTACCTTGAAAAGGGGGGATGGGTTGAGCCG TACACTCATACAGCGCATATTACGGCTACCAAATGAATGCGGTTTCCTCT TTAATTTCCAATGGGGTAAGACGATGCGAGACGGCACCGATCACCTCAAG ACAGTAGAGTACGACACTAAGCGTATGACCACATGTCCTATAAGAGGAGT CGAGCAGTACATCGCAGCAGGGACTGCGCTGGGCTGGAACATGACGCAAG GGTACCTCTTTCCGAGGATCTCACGACGGCCAAACACGGGAGCACCCATT AGGGGGAAGACGCCCATATCAGCACCAGATATGACAAAGGCGCTCAAAGT ACATTCGCGTAACGCCGGGGAACGCACCGCGTTCACCATGCCCTCCTTCA GATCAGGAGGAGCACTTACACGGGCACTAGCAGGAGAGGACCTGCCTACG GTAATGCAACGCGCATTCTGCAAGAAGCCGAGTACGGCTTGGAGATACCT CAGACTCATGGAAGTACTAATCCCCGGATCG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig117:382845..383975+

>mRNA_A-nodosum_M_contig117.30.1 ID=mRNA_A-nodosum_M_contig117.30.1|Name=mRNA_A-nodosum_M_contig117.30.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1131bp|location=Sequence derived from alignment at A-nodosum_M_contig117:382845..383975+ (Ascophyllum nodosum dioecious)
ATAGACGAATCCGCCATTGAACAACGATTTGCCCAGTTCACGAAAGCCGT
GGCGGGGAAACCATTCACACGCCGACGGGACTCCGCCAGCCTACTATTCG
AATGTTTCTTGCAATCCAGAGTAGCGGGAGGCCCAGAGCACATGGTAATG
GCCCAATTCAACGATGTAGTAACCTTCCTATGCTGGCTAGCCACCTGTTC
AGAGAAGAGACGTACAGCGGTCCACACTAGGGACTGCGAAGCAGTCGGTA
CATCAGAACTGTCAAACTGCTCAACGACGGAAGAGAGGTGTACCCTACGA
TACGCACACGACTCTTTGGGGACGAATTACGTTTCCAAGCTCGCCATGGC
TTACGAACGAGATCTGGGGGTAACACACGACTGGAATAGTGCACTGAGGA
CGGGCAACCCGGTCAGAAGCGATTTAGTCACGCAATACATGGCCTTCATA
AGGGAGGAGCAGAAGCAGGCAGGAGTCGAAGTATCACAAGCACCTGCAAT
GCTTCACAGCCACCTCACGGCAATTATTACACACATGACACTCCGCATAC
GGTGCACACAGGACCCCTATGACAGGATAGTTTTCGACAGGGATATCGCT
CTATTTACGGTAGCGTTTAGTACCTTGAAAAGGGGGGATGGGTTGAGCCG
TACACTCATACAGCGCATATTACGGCTACCAAATGAATGCGGTTTCCTCT
TTAATTTCCAATGGGGTAAGACGATGCGAGACGGCACCGATCACCTCAAG
ACAGTAGAGTACGACACTAAGCGTATGACCACATGTCCTATAAGAGGAGT
CGAGCAGTACATCGCAGCAGGGACTGCGCTGGGCTGGAACATGACGCAAG
GGTACCTCTTTCCGAGGATCTCACGACGGCCAAACACGGGAGCACCCATT
AGGGGGAAGACGCCCATATCAGCACCAGATATGACAAAGGCGCTCAAAGT
ACATTCGCGTAACGCCGGGGAACGCACCGCGTTCACCATGCCCTCCTTCA
GATCAGGAGGAGCACTTACACGGGCACTAGCAGGAGAGGACCTGCCTACG
GTAATGCAACGCGCATTCTGCAAGAAGCCGAGTACGGCTTGGAGATACCT
CAGACTCATGGAAGTACTAATCCCCGGATCG
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