mRNA_A-nodosum_M_contig117.30.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig117.30.1 vs. uniprot
Match: A0A6H5JIS8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIS8_9PHAE) HSP 1 Score: 209 bits (533), Expect = 1.080e-56 Identity = 131/352 (37.22%), Postives = 192/352 (54.55%), Query Frame = 1
Query: 46 AVAGKPFTRRRDSASLLFECFLQSRVAGGPEHMVMAQFNDVVTFLCWLATCSEKRRTAVHTRDCEAVGTSELSNCSTTEERCTLRYAHDSLGTNYVSKLAMAYERDLGVTHDWNSALRTGNPVRSDLVTQYMAFIREEQKQAGVEVSQAPAMLHSHLTAIITHMTLRIRCTQDPYDRIVFDRDIALFTVAFSTLKRGDGLSRTLIQRILRLPNECGFLFNFQWGKTMRDGTDHLKTVEYDTKRMTTCPIRGVEQYIAAGTALGWNMTQGYLFPRISRRPNTGAPIRGKTPISAPDMTKALKVHSRNAGERTAFTMPSFRSGGALTRALAGEDLPTVMQRAFCKKPSTAWRYL 1101
A++G+ R+ + F+ FL S +GG + V A +DVV + +L + K VH C VG+S+ +CS C RY +SL + SKL MAY+ LG DWN + +GNP S V Y+ F EEQK+ GV QA +L L ++ HM LR + +RI RD+ALF++A +++RG LS TL ++LRLP GF+FNF +GKT+R T+ + V T R C +R V +YI A +GW+++ GYLFP + + G+ RG + + A MT +L+ H R A F+M SFR GG+L+R++ G + +MQ K S A Y+
Sbjct: 682 AMSGRAGEVRKHRVADEFDLFLLS-YSGGGKGWVHASPDDVVDWFSYLDS-QGKGTKLVHDATCAGVGSSDRRSCSP-GATCKKRYGAESLRKGFYSKLKMAYKEQLGRGDDWNPTVGSGNPCASPTVDAYLTFTTEEQKRVGVTAKQAAPLLEDTLGELLPHMRLRALASDSMAERIAITRDVALFSLAHHSMRRGFDLSFTLGSQVLRLPESRGFIFNFLFGKTLRASTEAI-VVLASTNR-DVCAVRAVAEYILAAQQVGWDLSSGYLFPSVL---DDGS--RGNSKLVATQMTSSLQAHLRAASLPAHFSMHSFRVGGSLSRSMGGSAIEEIMQIGGWKTESMAKYYV 1023
BLAST of mRNA_A-nodosum_M_contig117.30.1 vs. uniprot
Match: A0A6H5KRN9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRN9_9PHAE) HSP 1 Score: 167 bits (423), Expect = 5.180e-42 Identity = 96/244 (39.34%), Postives = 135/244 (55.33%), Query Frame = 1
Query: 139 HMVMAQFNDVVTFLCWLATCSEKRRTAVHTRDCEAVGTSELSNCSTTEERCTLRYAHDSLGTNYVSKLAMAYERDLGVTHDWNSALRTGNPVRSDLVTQYMAFIREEQKQAGVEVSQAPAMLHSHLTAIITHMTLRIRCTQDPYDRIVFDRDIALFTVAFSTLKRGDGLSRTLIQRILRLPNECGFLFNFQWGKTMRDGTDHLKTVEYDTKRMTTCPIRGVEQYIAAGTALGWNMTQGYLFPRI 870
H A DV +LC+L T + VH R C VG + +C C RYA S+ VSKL MA + LG W+ A R+GNP S LV Y+ F EEQK+ GV V+QA AML L ++ M R + +RI RD+ALF++AF+ ++RG LS T+ ++L+LP G +FNFQ+GKT+RD D + V D + C + V YI+A +GW+++QG+LFP +
Sbjct: 711 HAHAASDRDVFDYLCFLDTQGSGTKW-VHDRACPGVGATHGRDCLP-NSTCAKRYAAASMQKGIVSKLKMAMQEQLGKERSWDPATRSGNPCSSPLVDSYLVFTGEEQKRVGVAVNQAEAMLPHVLIDLLRDMRSRAQTASSLAERIELTRDVALFSLAFAPMRRGHDLSFTMGSQVLQLPAGQGLIFNFQFGKTLRDSVDAV-VVSPDVACPSICAVSNVTGYISAAERIGWDLSQGHLFPVV 951
BLAST of mRNA_A-nodosum_M_contig117.30.1 vs. uniprot
Match: UPI001600D44B (uncharacterized protein LOC118418849 n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI001600D44B) HSP 1 Score: 134 bits (337), Expect = 1.190e-31 Identity = 96/373 (25.74%), Postives = 164/373 (43.97%), Query Frame = 1
Query: 1 IDESAIEQRFAQFTKAVAGKPFTRRRDSASLLFECFLQSRVAGGPEHMVMAQFNDVVTFLCWLATCSEKRRTAVHTRDCEAVGTSELSNCSTTEERCTLRYAHDSLGTNYVSKLAMAYERDLGVTHDWNSALRTGNPVRSDLVTQYMAFIREEQKQAGVEVSQAPAMLHSHLTAIITHMTLRIRCTQDPYDRI-VFDRDIALFTVAFSTLKRGDGLSRTLIQRILRLPNECGFLFNFQWGKTMRDGTDHLKTVEYDTKRMTTCPIRGVEQYIAAGTALGWNMTQGYLFPRISRRPNTGAPIRGKTPISAPDMTKALKVHSRNAGERTAFTMPSFRSGGALTRALAGEDLPTVMQRAFCKKPSTAWRYLRLMEV 1116
+D+ I+ R + K + +++ + FL +R P+ + A DV +FL W E +T VH + G S C C R A ++ + + +L + + G +WN A+ GNP + V +Y+ + EQ A ++ +QA + H L A+ TH+ +++R + ++ RD A F F R L R + + LP G LFN +GKT+RDGT + + + CP+RG++ Y TALG N+++GYLF +++ P S K + T+ R+ A+T A+ G +M ++ +TA RY++L +V
Sbjct: 61 VDDDKIQARLEEINKLAVSSDYGKKKAALENELRNFLGNR--SPPKDLTTASPKDVCSFLVWK---DEGGKTIVHKTGGKNFGEKRKSGCG-----CPKRLAAGTVDS-VIGQLRSIFTKS-GRGGEWNDAICAGNPAVAPRVAEYLRITKAEQANALIQPTQAQPVFHDKLEALCTHIAVKLRDPKTKESKLFTLARDQAFFKAMFFGADRAADLGRCKSEELAWLPEGEGILFNHTFGKTLRDGTANTFPI-LANENSAICPVRGLQAYFTMATALGINLSKGYLFRAMNKSKEVV-----NEPFSYDAAQSRFKEYLIKINRYEGDTLHGLRTASAITIAMGGASQSALMAHVGWREKATAQRYMQLRKV 415
BLAST of mRNA_A-nodosum_M_contig117.30.1 vs. uniprot
Match: UPI0009E55734 (uncharacterized protein LOC110054368 n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E55734) HSP 1 Score: 119 bits (297), Expect = 3.990e-27 Identity = 75/210 (35.71%), Postives = 111/210 (52.86%), Query Frame = 1
Query: 436 YMAFIREEQKQAGVEVSQAPAMLHSHLTAIITHMTLRIRCTQDPYDRIVFDRDIALFTVAFSTLKRGDGLSRTLIQRILRLPNECGFLFNFQWGKTMRDGTDHLKTVEYDTKRMTTCPIRGVEQYIAAGTALGWNMTQGYLFPRISRRPNTGAPIRGKTPISAPDMTKA-LKVHSRNAGERTAFTMPSFRSGGALTRALAGEDLPTVMQR 1062
++ + EQ QA V QA LT + +H+ R+R + DR V RD + + F + +R GL + + ILR PN+ GFLFN WGKT+RDG +++ V + + CP+RG+E+Y+ + ++T GYLF I+ P+ G T +A K LK + + GE T+ FRSG A+T ALAG DL +M R
Sbjct: 103 FLRLVTTEQLQAQVTPKQATPFFVDKLTQLCSHLDRRLRDSDRAIDRFVIARDQSYIKLVFFSGERPGGLGQIKVLEILRFPNDDGFLFNHNWGKTLRDGEENVFGVRRNAQA-EICPVRGIERYMEVTRDIRVDLTCGYLFRPIA--PDLGIKDAPFTSSAAESRLKGYLKEMNADNGE----TLHGFRSGCAITLALAGADLAEIMDR 305 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig117.30.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig117.30.1 >prot_A-nodosum_M_contig117.30.1 ID=prot_A-nodosum_M_contig117.30.1|Name=mRNA_A-nodosum_M_contig117.30.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=377bp IDESAIEQRFAQFTKAVAGKPFTRRRDSASLLFECFLQSRVAGGPEHMVMback to top mRNA from alignment at A-nodosum_M_contig117:382845..383975+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig117.30.1 ID=mRNA_A-nodosum_M_contig117.30.1|Name=mRNA_A-nodosum_M_contig117.30.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1131bp|location=Sequence derived from alignment at A-nodosum_M_contig117:382845..383975+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig117:382845..383975+ >mRNA_A-nodosum_M_contig117.30.1 ID=mRNA_A-nodosum_M_contig117.30.1|Name=mRNA_A-nodosum_M_contig117.30.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1131bp|location=Sequence derived from alignment at A-nodosum_M_contig117:382845..383975+ (Ascophyllum nodosum dioecious)back to top |