mRNA_A-nodosum_M_contig117.18.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig117.18.1 vs. uniprot
Match: D8LHE4_ECTSI (Similar to heparin sulfate O-sulfotransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHE4_ECTSI) HSP 1 Score: 111 bits (278), Expect = 1.660e-28 Identity = 51/73 (69.86%), Postives = 63/73 (86.30%), Query Frame = 1
Query: 1 AIEHLNTFFVVGVVEQYRGFIEVLKLTLDPEVKYPELWSKAVEIKNNGSPVLSGDVLQQIDPSLVKEFNSTAL 219
A++HLNTF+VVGVVEQY+GFIEVLK TLDP+ +P+LW+ AV +K+NGSPV SGDVL IDP LV+EFN+T L
Sbjct: 163 AVDHLNTFYVVGVVEQYQGFIEVLKRTLDPDESHPKLWAAAVGVKDNGSPVHSGDVLSGIDPDLVREFNATTL 235
BLAST of mRNA_A-nodosum_M_contig117.18.1 vs. uniprot
Match: A0A6H5KCZ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCZ6_9PHAE) HSP 1 Score: 110 bits (275), Expect = 2.970e-27 Identity = 51/73 (69.86%), Postives = 63/73 (86.30%), Query Frame = 1
Query: 1 AIEHLNTFFVVGVVEQYRGFIEVLKLTLDPEVKYPELWSKAVEIKNNGSPVLSGDVLQQIDPSLVKEFNSTAL 219
A++HLNTF+VVGVVEQY+GFIEVLK TLDP+ +P+LW+ AV + +NGSPV SGDVL IDP LV+EFN+TAL
Sbjct: 273 AVDHLNTFYVVGVVEQYQGFIEVLKRTLDPDESHPKLWAAAVGVLDNGSPVHSGDVLSGIDPDLVREFNATAL 345
BLAST of mRNA_A-nodosum_M_contig117.18.1 vs. uniprot
Match: D8LIP4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIP4_ECTSI) HSP 1 Score: 100 bits (249), Expect = 1.100e-23 Identity = 46/71 (64.79%), Postives = 57/71 (80.28%), Query Frame = 1
Query: 1 AIEHLNTFFVVGVVEQYRGFIEVLKLTLDPEVKYPELWSKAVEIKNNGSPVLSGDVLQQIDPSLVKEFNST 213
A EHL+ F+VVGVVEQY GF+ VL+ TLDPE+++P LW A E+ NNGSPV S DVL +IDP LV+EFN+T
Sbjct: 235 AAEHLSNFWVVGVVEQYAGFVNVLQHTLDPELEHPRLWEAASEVNNNGSPVHSRDVLDRIDPDLVREFNAT 305
BLAST of mRNA_A-nodosum_M_contig117.18.1 vs. uniprot
Match: D7FJ87_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ87_ECTSI) HSP 1 Score: 94.4 bits (233), Expect = 7.750e-22 Identity = 43/73 (58.90%), Postives = 56/73 (76.71%), Query Frame = 1
Query: 1 AIEHLNTFFVVGVVEQYRGFIEVLKLTLDPEVKYPELWSKAVEIKNNGSPVLSGDVLQQIDPSLVKEFNSTAL 219
++EHLNTF VVGVVEQY GF+EVLK TLDP ++ P +W+ +++NN SPV S DVL+ IDP LV+ +N T L
Sbjct: 159 SVEHLNTFLVVGVVEQYEGFVEVLKHTLDPGLENPSVWTTGAKVQNNKSPVSSRDVLRNIDPYLVRLYNETRL 231
BLAST of mRNA_A-nodosum_M_contig117.18.1 vs. uniprot
Match: A0A6H5KPF0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPF0_9PHAE) HSP 1 Score: 92.8 bits (229), Expect = 1.190e-20 Identity = 43/73 (58.90%), Postives = 55/73 (75.34%), Query Frame = 1
Query: 1 AIEHLNTFFVVGVVEQYRGFIEVLKLTLDPEVKYPELWSKAVEIKNNGSPVLSGDVLQQIDPSLVKEFNSTAL 219
++EHLNTF VVGVVEQY GFIEVLK TLDP ++ P +W+ ++NN SPV S DVL+ +DP LV+ +N T L
Sbjct: 268 SVEHLNTFLVVGVVEQYEGFIEVLKHTLDPGLENPSVWTTGANVQNNKSPVPSRDVLRNMDPYLVRLYNETRL 340
BLAST of mRNA_A-nodosum_M_contig117.18.1 vs. uniprot
Match: A0A6H5JGJ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGJ5_9PHAE) HSP 1 Score: 79.7 bits (195), Expect = 5.230e-16 Identity = 38/71 (53.52%), Postives = 52/71 (73.24%), Query Frame = 1
Query: 1 AIEHLNTFFVVGVVEQYRGFIEVLKLTLDPEVKYPELWSKAVEIKNNGSPVLSGDVLQQIDPSLVKEFNST 213
AIE+L TF++VG+VEQY GF+EVL+L LDPE K+ ++W + N SP+ S DVL +DP LV+EFN +
Sbjct: 217 AIENLETFWLVGLVEQYAGFVEVLELLLDPERKHVDVWQTYSTRQFNTSPLRSRDVLAALDPQLVREFNGS 287
BLAST of mRNA_A-nodosum_M_contig117.18.1 vs. uniprot
Match: A0A6H5JIX6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIX6_9PHAE) HSP 1 Score: 73.6 bits (179), Expect = 1.190e-14 Identity = 35/71 (49.30%), Postives = 50/71 (70.42%), Query Frame = 1
Query: 1 AIEHLNTFFVVGVVEQYRGFIEVLKLTLDPEVKYPELWSKAVEIKNNGSPVLSGDVLQQIDPSLVKEFNST 213
A+++L F++VGVVEQY G +EV + +LDPE K+ LW+K ++ N SPV S +VL IDP LV+ FN +
Sbjct: 61 ALKNLERFWIVGVVEQYTGLLEVWRRSLDPENKHGRLWNKYAAMQFNSSPVGSREVLALIDPELVRYFNGS 131
BLAST of mRNA_A-nodosum_M_contig117.18.1 vs. uniprot
Match: A0A6H5JAP0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JAP0_9PHAE) HSP 1 Score: 73.9 bits (180), Expect = 7.990e-14 Identity = 37/69 (53.62%), Postives = 49/69 (71.01%), Query Frame = 1
Query: 10 HLNTFFVVGVVEQYRGFIEVLKLTLDPEVKYPELWSKAVEI-KNNGSPVLSGDVLQQIDPSLVKEFNST 213
+L TF++VGVVEQY GF+ VL+ LDP+ + +LW +E K N SPV S +VL +DP LVK+FNST
Sbjct: 242 NLKTFWLVGVVEQYGGFVAVLRALLDPDGLHDDLWRPQLEEHKLNASPVQSSNVLASLDPQLVKQFNST 310
BLAST of mRNA_A-nodosum_M_contig117.18.1 vs. uniprot
Match: A0A6H5KGA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGA9_9PHAE) HSP 1 Score: 71.6 bits (174), Expect = 6.950e-13 Identity = 33/71 (46.48%), Postives = 50/71 (70.42%), Query Frame = 1
Query: 1 AIEHLNTFFVVGVVEQYRGFIEVLKLTLDPEVKYPELWSKAVEIKNNGSPVLSGDVLQQIDPSLVKEFNST 213
A+++L+TF++VGV+EQY+GF+ VL+ +DP ++W + K N SP +G VL IDP+LV+EFN T
Sbjct: 293 AMDNLDTFWLVGVIEQYQGFMAVLQAMMDPNKSERDMWKRYAVGKYNTSPQGAGKVLAAIDPALVQEFNET 363
BLAST of mRNA_A-nodosum_M_contig117.18.1 vs. uniprot
Match: D7G7G7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7G7_ECTSI) HSP 1 Score: 70.1 bits (170), Expect = 2.410e-12 Identity = 33/71 (46.48%), Postives = 49/71 (69.01%), Query Frame = 1
Query: 1 AIEHLNTFFVVGVVEQYRGFIEVLKLTLDPEVKYPELWSKAVEIKNNGSPVLSGDVLQQIDPSLVKEFNST 213
A ++L+TF++VGV+EQY+GF+ VL+ +DP ++W + K N SP +G VL IDP+LV+EFN T
Sbjct: 235 AKDNLDTFWLVGVIEQYQGFMAVLQAMMDPNKSERDMWKRYAVGKYNTSPQGAGKVLAAIDPALVQEFNET 305 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig117.18.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig117.18.1 >prot_A-nodosum_M_contig117.18.1 ID=prot_A-nodosum_M_contig117.18.1|Name=mRNA_A-nodosum_M_contig117.18.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=74bp AIEHLNTFFVVGVVEQYRGFIEVLKLTLDPEVKYPELWSKAVEIKNNGSPback to top mRNA from alignment at A-nodosum_M_contig117:246158..246939- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig117.18.1 ID=mRNA_A-nodosum_M_contig117.18.1|Name=mRNA_A-nodosum_M_contig117.18.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=782bp|location=Sequence derived from alignment at A-nodosum_M_contig117:246158..246939- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig117:246158..246939- >mRNA_A-nodosum_M_contig117.18.1 ID=mRNA_A-nodosum_M_contig117.18.1|Name=mRNA_A-nodosum_M_contig117.18.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=222bp|location=Sequence derived from alignment at A-nodosum_M_contig117:246158..246939- (Ascophyllum nodosum dioecious)back to top |