mRNA_A-nodosum_M_contig117.18.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig117.18.1
Unique NamemRNA_A-nodosum_M_contig117.18.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig117.18.1 vs. uniprot
Match: D8LHE4_ECTSI (Similar to heparin sulfate O-sulfotransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHE4_ECTSI)

HSP 1 Score: 111 bits (278), Expect = 1.660e-28
Identity = 51/73 (69.86%), Postives = 63/73 (86.30%), Query Frame = 1
Query:    1 AIEHLNTFFVVGVVEQYRGFIEVLKLTLDPEVKYPELWSKAVEIKNNGSPVLSGDVLQQIDPSLVKEFNSTAL 219
            A++HLNTF+VVGVVEQY+GFIEVLK TLDP+  +P+LW+ AV +K+NGSPV SGDVL  IDP LV+EFN+T L
Sbjct:  163 AVDHLNTFYVVGVVEQYQGFIEVLKRTLDPDESHPKLWAAAVGVKDNGSPVHSGDVLSGIDPDLVREFNATTL 235          
BLAST of mRNA_A-nodosum_M_contig117.18.1 vs. uniprot
Match: A0A6H5KCZ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCZ6_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 2.970e-27
Identity = 51/73 (69.86%), Postives = 63/73 (86.30%), Query Frame = 1
Query:    1 AIEHLNTFFVVGVVEQYRGFIEVLKLTLDPEVKYPELWSKAVEIKNNGSPVLSGDVLQQIDPSLVKEFNSTAL 219
            A++HLNTF+VVGVVEQY+GFIEVLK TLDP+  +P+LW+ AV + +NGSPV SGDVL  IDP LV+EFN+TAL
Sbjct:  273 AVDHLNTFYVVGVVEQYQGFIEVLKRTLDPDESHPKLWAAAVGVLDNGSPVHSGDVLSGIDPDLVREFNATAL 345          
BLAST of mRNA_A-nodosum_M_contig117.18.1 vs. uniprot
Match: D8LIP4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIP4_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 1.100e-23
Identity = 46/71 (64.79%), Postives = 57/71 (80.28%), Query Frame = 1
Query:    1 AIEHLNTFFVVGVVEQYRGFIEVLKLTLDPEVKYPELWSKAVEIKNNGSPVLSGDVLQQIDPSLVKEFNST 213
            A EHL+ F+VVGVVEQY GF+ VL+ TLDPE+++P LW  A E+ NNGSPV S DVL +IDP LV+EFN+T
Sbjct:  235 AAEHLSNFWVVGVVEQYAGFVNVLQHTLDPELEHPRLWEAASEVNNNGSPVHSRDVLDRIDPDLVREFNAT 305          
BLAST of mRNA_A-nodosum_M_contig117.18.1 vs. uniprot
Match: D7FJ87_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ87_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 7.750e-22
Identity = 43/73 (58.90%), Postives = 56/73 (76.71%), Query Frame = 1
Query:    1 AIEHLNTFFVVGVVEQYRGFIEVLKLTLDPEVKYPELWSKAVEIKNNGSPVLSGDVLQQIDPSLVKEFNSTAL 219
            ++EHLNTF VVGVVEQY GF+EVLK TLDP ++ P +W+   +++NN SPV S DVL+ IDP LV+ +N T L
Sbjct:  159 SVEHLNTFLVVGVVEQYEGFVEVLKHTLDPGLENPSVWTTGAKVQNNKSPVSSRDVLRNIDPYLVRLYNETRL 231          
BLAST of mRNA_A-nodosum_M_contig117.18.1 vs. uniprot
Match: A0A6H5KPF0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPF0_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 1.190e-20
Identity = 43/73 (58.90%), Postives = 55/73 (75.34%), Query Frame = 1
Query:    1 AIEHLNTFFVVGVVEQYRGFIEVLKLTLDPEVKYPELWSKAVEIKNNGSPVLSGDVLQQIDPSLVKEFNSTAL 219
            ++EHLNTF VVGVVEQY GFIEVLK TLDP ++ P +W+    ++NN SPV S DVL+ +DP LV+ +N T L
Sbjct:  268 SVEHLNTFLVVGVVEQYEGFIEVLKHTLDPGLENPSVWTTGANVQNNKSPVPSRDVLRNMDPYLVRLYNETRL 340          
BLAST of mRNA_A-nodosum_M_contig117.18.1 vs. uniprot
Match: A0A6H5JGJ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGJ5_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 5.230e-16
Identity = 38/71 (53.52%), Postives = 52/71 (73.24%), Query Frame = 1
Query:    1 AIEHLNTFFVVGVVEQYRGFIEVLKLTLDPEVKYPELWSKAVEIKNNGSPVLSGDVLQQIDPSLVKEFNST 213
            AIE+L TF++VG+VEQY GF+EVL+L LDPE K+ ++W      + N SP+ S DVL  +DP LV+EFN +
Sbjct:  217 AIENLETFWLVGLVEQYAGFVEVLELLLDPERKHVDVWQTYSTRQFNTSPLRSRDVLAALDPQLVREFNGS 287          
BLAST of mRNA_A-nodosum_M_contig117.18.1 vs. uniprot
Match: A0A6H5JIX6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIX6_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 1.190e-14
Identity = 35/71 (49.30%), Postives = 50/71 (70.42%), Query Frame = 1
Query:    1 AIEHLNTFFVVGVVEQYRGFIEVLKLTLDPEVKYPELWSKAVEIKNNGSPVLSGDVLQQIDPSLVKEFNST 213
            A+++L  F++VGVVEQY G +EV + +LDPE K+  LW+K   ++ N SPV S +VL  IDP LV+ FN +
Sbjct:   61 ALKNLERFWIVGVVEQYTGLLEVWRRSLDPENKHGRLWNKYAAMQFNSSPVGSREVLALIDPELVRYFNGS 131          
BLAST of mRNA_A-nodosum_M_contig117.18.1 vs. uniprot
Match: A0A6H5JAP0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JAP0_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 7.990e-14
Identity = 37/69 (53.62%), Postives = 49/69 (71.01%), Query Frame = 1
Query:   10 HLNTFFVVGVVEQYRGFIEVLKLTLDPEVKYPELWSKAVEI-KNNGSPVLSGDVLQQIDPSLVKEFNST 213
            +L TF++VGVVEQY GF+ VL+  LDP+  + +LW   +E  K N SPV S +VL  +DP LVK+FNST
Sbjct:  242 NLKTFWLVGVVEQYGGFVAVLRALLDPDGLHDDLWRPQLEEHKLNASPVQSSNVLASLDPQLVKQFNST 310          
BLAST of mRNA_A-nodosum_M_contig117.18.1 vs. uniprot
Match: A0A6H5KGA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGA9_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 6.950e-13
Identity = 33/71 (46.48%), Postives = 50/71 (70.42%), Query Frame = 1
Query:    1 AIEHLNTFFVVGVVEQYRGFIEVLKLTLDPEVKYPELWSKAVEIKNNGSPVLSGDVLQQIDPSLVKEFNST 213
            A+++L+TF++VGV+EQY+GF+ VL+  +DP     ++W +    K N SP  +G VL  IDP+LV+EFN T
Sbjct:  293 AMDNLDTFWLVGVIEQYQGFMAVLQAMMDPNKSERDMWKRYAVGKYNTSPQGAGKVLAAIDPALVQEFNET 363          
BLAST of mRNA_A-nodosum_M_contig117.18.1 vs. uniprot
Match: D7G7G7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7G7_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 2.410e-12
Identity = 33/71 (46.48%), Postives = 49/71 (69.01%), Query Frame = 1
Query:    1 AIEHLNTFFVVGVVEQYRGFIEVLKLTLDPEVKYPELWSKAVEIKNNGSPVLSGDVLQQIDPSLVKEFNST 213
            A ++L+TF++VGV+EQY+GF+ VL+  +DP     ++W +    K N SP  +G VL  IDP+LV+EFN T
Sbjct:  235 AKDNLDTFWLVGVIEQYQGFMAVLQAMMDPNKSERDMWKRYAVGKYNTSPQGAGKVLAAIDPALVQEFNET 305          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig117.18.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D8LHE4_ECTSI1.660e-2869.86Similar to heparin sulfate O-sulfotransferase n=1 ... [more]
A0A6H5KCZ6_9PHAE2.970e-2769.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LIP4_ECTSI1.100e-2364.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FJ87_ECTSI7.750e-2258.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KPF0_9PHAE1.190e-2058.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JGJ5_9PHAE5.230e-1653.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JIX6_9PHAE1.190e-1449.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAP0_9PHAE7.990e-1453.62Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5KGA9_9PHAE6.950e-1346.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7G7_ECTSI2.410e-1246.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig117contigA-nodosum_M_contig117:246158..246939 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LIP4
Preferred nameTMEM256
PFAMsDUF423
Model size222
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.81e-24
EggNOG OGsCOG2363@1|root,KOG3472@2759|Eukaryota
DescriptionProtein of unknown function (DUF423)
Cds size222
COG categoryJ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866577.3559747-CDS-A-nodosum_M_contig117:246157..2462361680866577.3559747-CDS-A-nodosum_M_contig117:246157..246236Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig117 246158..246236 -
1680866577.365819-CDS-A-nodosum_M_contig117:246796..2469391680866577.365819-CDS-A-nodosum_M_contig117:246796..246939Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig117 246797..246939 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig117.18.1prot_A-nodosum_M_contig117.18.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig117 246158..246939 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig117.18.1

>prot_A-nodosum_M_contig117.18.1 ID=prot_A-nodosum_M_contig117.18.1|Name=mRNA_A-nodosum_M_contig117.18.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=74bp
AIEHLNTFFVVGVVEQYRGFIEVLKLTLDPEVKYPELWSKAVEIKNNGSP
VLSGDVLQQIDPSLVKEFNSTALK
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mRNA from alignment at A-nodosum_M_contig117:246158..246939-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig117.18.1 ID=mRNA_A-nodosum_M_contig117.18.1|Name=mRNA_A-nodosum_M_contig117.18.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=782bp|location=Sequence derived from alignment at A-nodosum_M_contig117:246158..246939- (Ascophyllum nodosum dioecious)
GCTATTGAACACCTCAACACCTTTTTCGTGGTGGGAGTGGTTGAGCAATA CCGTGGGTTCATAGAGGTCTTGAAGCTTACCTTGGACCCCGAAGTCAAAT ACCCGGAGCTTTGGAGCAAGGCGGTCGAGATCAAGAATAACGGGTGGGAA ATCAGACGAGGGGGAAAAAACATGCCAAGGAGATAAAGCTCGACGGTAGT ACTACGCAGCTACAATAAAAAATACATATAACACGTGCGTCGTGGACAGT AGCATTTATCATAAGGGGAGGTCATTTTCGCAACGCCCCAGCATGACAAT ATGGCAGGTTCAAACACGCCGGCGTTGGTGGAGACTCTTGGGCATTTAAC ATTTACTGTGCTGTATGAGAGAAATACTATTAGTACTGTTGTACTGGCTG TAGGTTACACGAAATCCACCCAAGCCCAGCTGTTTTGTCGGCATGGTCCC CTCTATTCCTCTGTTATGGAGGAGTAAGATCTACTGTCTTCAAATTATAT TAAATGTCAAGTAATATACGTTAATGAATCGACTCCTGGCAACCTCTACT CTACTCTACTCTACCTTACAGGGGCCGACAGCGTAATATCGGTCTGGCGA GGGCCTTGTAAGCTAAGCGATCCCCACTCTCGCGATGACGTGCCCTTTTC GATCCTTTTCGATCTTATGCGCCTGCGCACTGAAATCATGCTGTACGCAA CAGTTCGCCCGTACTTTCTGGAGACGTATTGCAGCAGATCGACCCAAGCT TGGTAAAGGAGTTCAACTCTACCGCCCTGAAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig117:246158..246939-

>mRNA_A-nodosum_M_contig117.18.1 ID=mRNA_A-nodosum_M_contig117.18.1|Name=mRNA_A-nodosum_M_contig117.18.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=222bp|location=Sequence derived from alignment at A-nodosum_M_contig117:246158..246939- (Ascophyllum nodosum dioecious)
GCTATTGAACACCTCAACACCTTTTTCGTGGTGGGAGTGGTTGAGCAATA
CCGTGGGTTCATAGAGGTCTTGAAGCTTACCTTGGACCCCGAAGTCAAAT
ACCCGGAGCTTTGGAGCAAGGCGGTCGAGATCAAGAATAACGGTTCGCCC
GTACTTTCTGGAGACGTATTGCAGCAGATCGACCCAAGCTTGGTAAAGGA
GTTCAACTCTACCGCCCTGAAG
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