mRNA_A-nodosum_M_contig117.13.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig117.13.1
Unique NamemRNA_A-nodosum_M_contig117.13.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig117.13.1 vs. uniprot
Match: A0A6H5JYE2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYE2_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 1.730e-21
Identity = 54/131 (41.22%), Postives = 72/131 (54.96%), Query Frame = 3
Query:    9 SYNRALEITGCESIETTLRTRRLLWAGTLLRMSGGRLPKRIMFGNLEGAVRRGRGGKEKEWTDCVQSDIRAFG--------------ITGDWETM-------AVKAE---VWVEAVTKGGRRFMAAWRQEE 329
            SY + L+   C+S+E T+R RRLL+AG+L R   GRLPKR+MFG L G  +R RGG+E+ W  CV  D++AFG              I G  +T        A K E    W  AV +G  RFM +W ++E
Sbjct:   46 SYAQTLKRVECQSVEATIRQRRLLFAGSLARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLKAFGADHGSTKTDPCCFGIPGPKDTAPKLKGTEAAKVEGGVPWHAAVLQGAERFMTSWHKKE 176          
BLAST of mRNA_A-nodosum_M_contig117.13.1 vs. uniprot
Match: A0A6H5K1X4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1X4_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 1.930e-21
Identity = 56/136 (41.18%), Postives = 76/136 (55.88%), Query Frame = 3
Query:    9 SYNRALEITGCESIETTLRTRRLLWAGTLLRMSGGRLPKRIMFGNLEGAVRRGRGGKEKEWTDCVQSDIRAFG----------------ITGD------W-ETMAVKAEV-WVEAVTKGGRRFMAAWRQEEEDAAR 344
            SY + L+   C+S+E T+R RRLL+AG L R   GRLPKR+M G L G  +R RGG+E+ W  CV  D++AFG                +  D      W E   V+ EV W  AV +G  RFM +W ++EE+A+R
Sbjct:  202 SYAQTLKRVECQSVEATIRQRRLLFAGALARQPDGRLPKRLMLGELAGGEKRRRGGQEQNWPKCVLDDLKAFGADHGSTNTDPCCLGIPVPNDTAPKLKWTEAAKVEGEVPWHAAVLQGAERFMTSWHEKEEEASR 337          
BLAST of mRNA_A-nodosum_M_contig117.13.1 vs. uniprot
Match: A0A6H5KS82_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS82_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 4.150e-21
Identity = 58/137 (42.34%), Postives = 75/137 (54.74%), Query Frame = 3
Query:    9 SYNRALEITGCESIETTLRTRRLLWAGTLLRMSGGRLPKRIMFGNLEGAVRRGRGGKEKEWTDCVQSDIRAFGI----------------TGD------WETMAVKAE---VWVEAVTKGGRRFMAAWRQEEEDAAR 344
            SY + L+   C+S+E T+R RRLL+AG L R   GRLPKR+MFG L G  +R RGG+E+ W  CV  D+ AFG                 T D      W T A K E    W  AV +G  RFM +W ++EE+A+R
Sbjct:  530 SYAQTLKRFECQSVEATIRQRRLLFAGALARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLNAFGADHGSTKTDPCCLGIPETKDTAPKLQW-TEAAKVEGGVPWHAAVLQGAERFMTSWHEKEEEASR 665          
BLAST of mRNA_A-nodosum_M_contig117.13.1 vs. uniprot
Match: UPI001AA1AADC (hypothetical protein n=1 Tax=Vibrio parahaemolyticus TaxID=670 RepID=UPI001AA1AADC)

HSP 1 Score: 92.0 bits (227), Expect = 7.330e-21
Identity = 51/127 (40.16%), Postives = 67/127 (52.76%), Query Frame = 3
Query:    9 SYNRALEITGCESIETTLRTRRLLWAGTLLRMSGGRLPKRIMFGNLEGAVRRGRGGKEKEWTDCVQSDIR--------------AFGI-TGDWETMAVKAEVWVEAVTKGGRRFMAAWRQEEEDAAR 344
            SY +AL++T CESIETT+R RRL +AG + R S  RLP R+MFG + G      GG+ K W  CV  D+R               FG+ T  W T A KA  W   + +   RFM  W + E + +R
Sbjct:   15 SYAKALKMTRCESIETTIRKRRLFFAGGVARQSKDRLPSRVMFGTIAGGENPRPGGQVKTWHRCVVEDLREFRATEGSTELAPLVFGVETALWPTAAKKAGKWYRGILEAAERFMVRWHEAEAELSR 141          
BLAST of mRNA_A-nodosum_M_contig117.13.1 vs. uniprot
Match: A0A6H5JFE2_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFE2_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 8.220e-21
Identity = 57/137 (41.61%), Postives = 75/137 (54.74%), Query Frame = 3
Query:    9 SYNRALEITGCESIETTLRTRRLLWAGTLLRMSGGRLPKRIMFGNLEGAVRRGRGGKEKEWTDCVQSDIRAFG----------------ITGD------WETMAVKAE---VWVEAVTKGGRRFMAAWRQEEEDAAR 344
            S  R L+   C+S+E T+R RRLL+AG L R   GRLPKR+MFG L G  +R RGG+E+ W  CV  D++AFG                +  D      W T A K E    W  AV +G  RFM +W ++EE+A+R
Sbjct:  308 SSYRTLKRVECQSVEATIRQRRLLFAGALARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLKAFGADHGSTKTDPCCLGIPVPKDTTPKVKW-TEAAKVEGGVPWHAAVLQGAERFMTSWHEKEEEASR 443          
BLAST of mRNA_A-nodosum_M_contig117.13.1 vs. uniprot
Match: A0A6H5KF72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF72_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 1.730e-20
Identity = 54/129 (41.86%), Postives = 73/129 (56.59%), Query Frame = 3
Query:    9 SYNRALEITGCESIETTLRTRRLLWAGTLLRMSGGRLPKRIMFGNLEGAVRRGRGGKEKEWTDCVQSDIRAF----GITGD-----------WETMA-VKAEV-WVEAVTKGGRRFMAAWRQEEEDAAR 344
            SY +AL+  GC+S+E T+R R LL+AG + R   GRLPKR+MFG L G    GRG  E+ W  C++ D++ F    G T D           W+  A V+  V W   V +G  RFMA+W + EE A+R
Sbjct:   38 SYAQALKRVGCQSVEATVRQRCLLFAGAMARQPDGRLPKRLMFGELVGGENPGRGSPEQNWLICLKDDLKMFEARHGSTPDKRSFFGIPKPDWDEAAKVEGGVPWHAGVLQGAERFMASWHKGEEKASR 166          
BLAST of mRNA_A-nodosum_M_contig117.13.1 vs. uniprot
Match: A0A6H5K7U5_9PHAE (Reverse transcriptase domain-containing protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7U5_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 2.760e-20
Identity = 54/129 (41.86%), Postives = 76/129 (58.91%), Query Frame = 3
Query:    9 SYNRALEITGCESIETTLRTRRLLWAGTLLRMSGGRLPKRIMFGNLEGAVRRGRGGKEKEWTDCVQSDIRAF----GITGDWETM-AVKAEVWVEA------------VTKGGRRFMAAWRQEEEDAAR 344
            SY +AL+  GC+S+E T+R RRLL+AG + R   GRLPKR+MFG L G    GRG  E+ W  C++ D++ F    G T D +++  V   VW EA            V +G  RFMA+W + +E+A+R
Sbjct:  956 SYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGRGNPEQNWLTCLKDDMKMFEARYGSTTDKQSVFGVPKLVWSEAAKVEGGVPWHAGVLQGAERFMASWHKGKEEASR 1084          
BLAST of mRNA_A-nodosum_M_contig117.13.1 vs. uniprot
Match: A0A6H5KA81_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA81_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 4.890e-20
Identity = 55/129 (42.64%), Postives = 74/129 (57.36%), Query Frame = 3
Query:    9 SYNRALEITGCESIETTLRTRRLLWAGTLLRMSGGRLPKRIMFGNLEGAVRRGRGGKEKEWTDCVQSDIRAF----GITGD-----------WETMA-VKAEV-WVEAVTKGGRRFMAAWRQEEEDAAR 344
            SY +AL+  GC+S+E T+R RRLL+AG + R   GRLPKR+MFG L G    GRG  E+ W  C++ D++ F    G T D           W+  A V+  V W   V +G  RFMA+W + EE A+R
Sbjct:  459 SYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGENPGRGSPEQNWLICLKDDLKMFEARHGSTPDKRSFFGIPKPDWDEAAKVEGGVPWHAGVLQGAERFMASWHKGEEKASR 587          
BLAST of mRNA_A-nodosum_M_contig117.13.1 vs. uniprot
Match: A0A6H5JKI4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKI4_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 1.270e-19
Identity = 54/129 (41.86%), Postives = 74/129 (57.36%), Query Frame = 3
Query:    9 SYNRALEITGCESIETTLRTRRLLWAGTLLRMSGGRLPKRIMFGNLEGAVRRGRGGKEKEWTDCVQSDIRAF----GITGD-----------WETMA-VKAEV-WVEAVTKGGRRFMAAWRQEEEDAAR 344
            SY +AL+  GC+S+E T+R RR+L+AG + R   GRLPKR+MFG L G    GRG  E+ W  C++ D++ F    G T D           W+  A V+  V W   V +G  RFMA+W + EE A+R
Sbjct:  565 SYAQALKRVGCQSVEATVRQRRVLFAGAVARQPDGRLPKRLMFGELVGGENPGRGSPEQNWLICLKDDLKMFEARHGSTPDKRSFFGIPKPDWDEAAKVEGGVPWHAGVLQGAERFMASWHKGEEKASR 693          
BLAST of mRNA_A-nodosum_M_contig117.13.1 vs. uniprot
Match: A0A6H5JWS4_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWS4_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 2.200e-19
Identity = 53/129 (41.09%), Postives = 74/129 (57.36%), Query Frame = 3
Query:    9 SYNRALEITGCESIETTLRTRRLLWAGTLLRMSGGRLPKRIMFGNLEGAVRRGRGGKEKEWTDCVQSDIRAF----GITGDWETM-AVKAEVWVEA------------VTKGGRRFMAAWRQEEEDAAR 344
            SY +AL+  GC+S+E T+R RRLL+AG + R   GRLPKR+MFG L G    G+G  E+ W  C++ D++ F    G T D  ++  V   VW EA            V +G  RFMA+W + +E+A R
Sbjct:  176 SYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWLTCLKDDMKMFEARYGSTTDKPSVFGVPKLVWSEAAKVEGGVPWHAGVLQGAERFMASWHKGKEEANR 304          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig117.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JYE2_9PHAE1.730e-2141.22Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K1X4_9PHAE1.930e-2141.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KS82_9PHAE4.150e-2142.34Reverse transcriptase domain-containing protein (F... [more]
UPI001AA1AADC7.330e-2140.16hypothetical protein n=1 Tax=Vibrio parahaemolytic... [more]
A0A6H5JFE2_9PHAE8.220e-2141.61Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KF72_9PHAE1.730e-2041.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7U5_9PHAE2.760e-2041.86Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KA81_9PHAE4.890e-2042.64Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JKI4_9PHAE1.270e-1941.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWS4_9PHAE2.200e-1941.09Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig117contigA-nodosum_M_contig117:169871..170217 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog6500.XP_005092354.1
PFAMsRVT_1
Model size349
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.57e-12
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota,3A35Z@33154|Opisthokonta,3BQYF@33208|Metazoa,3D7GC@33213|Bilateria
DescriptionRibonuclease H protein
Cds size345
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866577.3108351-CDS-A-nodosum_M_contig117:169870..1702151680866577.3108351-CDS-A-nodosum_M_contig117:169870..170215Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig117 169871..170215 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866577.3232636-UTR-A-nodosum_M_contig117:170215..1702171680866577.3232636-UTR-A-nodosum_M_contig117:170215..170217Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig117 170216..170217 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig117.13.1prot_A-nodosum_M_contig117.13.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig117 169871..170215 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig117.13.1

>prot_A-nodosum_M_contig117.13.1 ID=prot_A-nodosum_M_contig117.13.1|Name=mRNA_A-nodosum_M_contig117.13.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=115bp
MTSYNRALEITGCESIETTLRTRRLLWAGTLLRMSGGRLPKRIMFGNLEG
AVRRGRGGKEKEWTDCVQSDIRAFGITGDWETMAVKAEVWVEAVTKGGRR
FMAAWRQEEEDAARH
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mRNA from alignment at A-nodosum_M_contig117:169871..170217-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig117.13.1 ID=mRNA_A-nodosum_M_contig117.13.1|Name=mRNA_A-nodosum_M_contig117.13.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=347bp|location=Sequence derived from alignment at A-nodosum_M_contig117:169871..170217- (Ascophyllum nodosum dioecious)
GGATGACCTCGTACAACCGTGCCCTTGAGATTACCGGGTGCGAGAGCATT GAGACAACGTTGCGCACGAGAAGACTTTTGTGGGCGGGAACGCTCCTCCG AATGAGCGGCGGGCGGTTGCCAAAGCGAATCATGTTCGGAAACCTTGAGG GCGCAGTGCGTAGAGGACGGGGTGGGAAGGAGAAAGAATGGACCGACTGT GTACAGAGCGACATCCGGGCGTTTGGCATAACGGGGGATTGGGAAACGAT GGCGGTAAAGGCTGAGGTTTGGGTTGAGGCGGTCACGAAGGGTGGGCGGA GGTTCATGGCCGCGTGGAGGCAAGAAGAGGAAGACGCGGCCAGACAT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig117:169871..170217-

>mRNA_A-nodosum_M_contig117.13.1 ID=mRNA_A-nodosum_M_contig117.13.1|Name=mRNA_A-nodosum_M_contig117.13.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=345bp|location=Sequence derived from alignment at A-nodosum_M_contig117:169871..170217- (Ascophyllum nodosum dioecious)
ATGACCTCGTACAACCGTGCCCTTGAGATTACCGGGTGCGAGAGCATTGA
GACAACGTTGCGCACGAGAAGACTTTTGTGGGCGGGAACGCTCCTCCGAA
TGAGCGGCGGGCGGTTGCCAAAGCGAATCATGTTCGGAAACCTTGAGGGC
GCAGTGCGTAGAGGACGGGGTGGGAAGGAGAAAGAATGGACCGACTGTGT
ACAGAGCGACATCCGGGCGTTTGGCATAACGGGGGATTGGGAAACGATGG
CGGTAAAGGCTGAGGTTTGGGTTGAGGCGGTCACGAAGGGTGGGCGGAGG
TTCATGGCCGCGTGGAGGCAAGAAGAGGAAGACGCGGCCAGACAT
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