mRNA_A-nodosum_M_contig117.13.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig117.13.1 vs. uniprot
Match: A0A6H5JYE2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYE2_9PHAE) HSP 1 Score: 93.6 bits (231), Expect = 1.730e-21 Identity = 54/131 (41.22%), Postives = 72/131 (54.96%), Query Frame = 3
Query: 9 SYNRALEITGCESIETTLRTRRLLWAGTLLRMSGGRLPKRIMFGNLEGAVRRGRGGKEKEWTDCVQSDIRAFG--------------ITGDWETM-------AVKAE---VWVEAVTKGGRRFMAAWRQEE 329
SY + L+ C+S+E T+R RRLL+AG+L R GRLPKR+MFG L G +R RGG+E+ W CV D++AFG I G +T A K E W AV +G RFM +W ++E
Sbjct: 46 SYAQTLKRVECQSVEATIRQRRLLFAGSLARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLKAFGADHGSTKTDPCCFGIPGPKDTAPKLKGTEAAKVEGGVPWHAAVLQGAERFMTSWHKKE 176
BLAST of mRNA_A-nodosum_M_contig117.13.1 vs. uniprot
Match: A0A6H5K1X4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1X4_9PHAE) HSP 1 Score: 97.8 bits (242), Expect = 1.930e-21 Identity = 56/136 (41.18%), Postives = 76/136 (55.88%), Query Frame = 3
Query: 9 SYNRALEITGCESIETTLRTRRLLWAGTLLRMSGGRLPKRIMFGNLEGAVRRGRGGKEKEWTDCVQSDIRAFG----------------ITGD------W-ETMAVKAEV-WVEAVTKGGRRFMAAWRQEEEDAAR 344
SY + L+ C+S+E T+R RRLL+AG L R GRLPKR+M G L G +R RGG+E+ W CV D++AFG + D W E V+ EV W AV +G RFM +W ++EE+A+R
Sbjct: 202 SYAQTLKRVECQSVEATIRQRRLLFAGALARQPDGRLPKRLMLGELAGGEKRRRGGQEQNWPKCVLDDLKAFGADHGSTNTDPCCLGIPVPNDTAPKLKWTEAAKVEGEVPWHAAVLQGAERFMTSWHEKEEEASR 337
BLAST of mRNA_A-nodosum_M_contig117.13.1 vs. uniprot
Match: A0A6H5KS82_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS82_9PHAE) HSP 1 Score: 97.1 bits (240), Expect = 4.150e-21 Identity = 58/137 (42.34%), Postives = 75/137 (54.74%), Query Frame = 3
Query: 9 SYNRALEITGCESIETTLRTRRLLWAGTLLRMSGGRLPKRIMFGNLEGAVRRGRGGKEKEWTDCVQSDIRAFGI----------------TGD------WETMAVKAE---VWVEAVTKGGRRFMAAWRQEEEDAAR 344
SY + L+ C+S+E T+R RRLL+AG L R GRLPKR+MFG L G +R RGG+E+ W CV D+ AFG T D W T A K E W AV +G RFM +W ++EE+A+R
Sbjct: 530 SYAQTLKRFECQSVEATIRQRRLLFAGALARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLNAFGADHGSTKTDPCCLGIPETKDTAPKLQW-TEAAKVEGGVPWHAAVLQGAERFMTSWHEKEEEASR 665
BLAST of mRNA_A-nodosum_M_contig117.13.1 vs. uniprot
Match: UPI001AA1AADC (hypothetical protein n=1 Tax=Vibrio parahaemolyticus TaxID=670 RepID=UPI001AA1AADC) HSP 1 Score: 92.0 bits (227), Expect = 7.330e-21 Identity = 51/127 (40.16%), Postives = 67/127 (52.76%), Query Frame = 3
Query: 9 SYNRALEITGCESIETTLRTRRLLWAGTLLRMSGGRLPKRIMFGNLEGAVRRGRGGKEKEWTDCVQSDIR--------------AFGI-TGDWETMAVKAEVWVEAVTKGGRRFMAAWRQEEEDAAR 344
SY +AL++T CESIETT+R RRL +AG + R S RLP R+MFG + G GG+ K W CV D+R FG+ T W T A KA W + + RFM W + E + +R
Sbjct: 15 SYAKALKMTRCESIETTIRKRRLFFAGGVARQSKDRLPSRVMFGTIAGGENPRPGGQVKTWHRCVVEDLREFRATEGSTELAPLVFGVETALWPTAAKKAGKWYRGILEAAERFMVRWHEAEAELSR 141
BLAST of mRNA_A-nodosum_M_contig117.13.1 vs. uniprot
Match: A0A6H5JFE2_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFE2_9PHAE) HSP 1 Score: 95.9 bits (237), Expect = 8.220e-21 Identity = 57/137 (41.61%), Postives = 75/137 (54.74%), Query Frame = 3
Query: 9 SYNRALEITGCESIETTLRTRRLLWAGTLLRMSGGRLPKRIMFGNLEGAVRRGRGGKEKEWTDCVQSDIRAFG----------------ITGD------WETMAVKAE---VWVEAVTKGGRRFMAAWRQEEEDAAR 344
S R L+ C+S+E T+R RRLL+AG L R GRLPKR+MFG L G +R RGG+E+ W CV D++AFG + D W T A K E W AV +G RFM +W ++EE+A+R
Sbjct: 308 SSYRTLKRVECQSVEATIRQRRLLFAGALARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLKAFGADHGSTKTDPCCLGIPVPKDTTPKVKW-TEAAKVEGGVPWHAAVLQGAERFMTSWHEKEEEASR 443
BLAST of mRNA_A-nodosum_M_contig117.13.1 vs. uniprot
Match: A0A6H5KF72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF72_9PHAE) HSP 1 Score: 91.3 bits (225), Expect = 1.730e-20 Identity = 54/129 (41.86%), Postives = 73/129 (56.59%), Query Frame = 3
Query: 9 SYNRALEITGCESIETTLRTRRLLWAGTLLRMSGGRLPKRIMFGNLEGAVRRGRGGKEKEWTDCVQSDIRAF----GITGD-----------WETMA-VKAEV-WVEAVTKGGRRFMAAWRQEEEDAAR 344
SY +AL+ GC+S+E T+R R LL+AG + R GRLPKR+MFG L G GRG E+ W C++ D++ F G T D W+ A V+ V W V +G RFMA+W + EE A+R
Sbjct: 38 SYAQALKRVGCQSVEATVRQRCLLFAGAMARQPDGRLPKRLMFGELVGGENPGRGSPEQNWLICLKDDLKMFEARHGSTPDKRSFFGIPKPDWDEAAKVEGGVPWHAGVLQGAERFMASWHKGEEKASR 166
BLAST of mRNA_A-nodosum_M_contig117.13.1 vs. uniprot
Match: A0A6H5K7U5_9PHAE (Reverse transcriptase domain-containing protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7U5_9PHAE) HSP 1 Score: 94.7 bits (234), Expect = 2.760e-20 Identity = 54/129 (41.86%), Postives = 76/129 (58.91%), Query Frame = 3
Query: 9 SYNRALEITGCESIETTLRTRRLLWAGTLLRMSGGRLPKRIMFGNLEGAVRRGRGGKEKEWTDCVQSDIRAF----GITGDWETM-AVKAEVWVEA------------VTKGGRRFMAAWRQEEEDAAR 344
SY +AL+ GC+S+E T+R RRLL+AG + R GRLPKR+MFG L G GRG E+ W C++ D++ F G T D +++ V VW EA V +G RFMA+W + +E+A+R
Sbjct: 956 SYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGRGNPEQNWLTCLKDDMKMFEARYGSTTDKQSVFGVPKLVWSEAAKVEGGVPWHAGVLQGAERFMASWHKGKEEASR 1084
BLAST of mRNA_A-nodosum_M_contig117.13.1 vs. uniprot
Match: A0A6H5KA81_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA81_9PHAE) HSP 1 Score: 94.0 bits (232), Expect = 4.890e-20 Identity = 55/129 (42.64%), Postives = 74/129 (57.36%), Query Frame = 3
Query: 9 SYNRALEITGCESIETTLRTRRLLWAGTLLRMSGGRLPKRIMFGNLEGAVRRGRGGKEKEWTDCVQSDIRAF----GITGD-----------WETMA-VKAEV-WVEAVTKGGRRFMAAWRQEEEDAAR 344
SY +AL+ GC+S+E T+R RRLL+AG + R GRLPKR+MFG L G GRG E+ W C++ D++ F G T D W+ A V+ V W V +G RFMA+W + EE A+R
Sbjct: 459 SYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGENPGRGSPEQNWLICLKDDLKMFEARHGSTPDKRSFFGIPKPDWDEAAKVEGGVPWHAGVLQGAERFMASWHKGEEKASR 587
BLAST of mRNA_A-nodosum_M_contig117.13.1 vs. uniprot
Match: A0A6H5JKI4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKI4_9PHAE) HSP 1 Score: 92.8 bits (229), Expect = 1.270e-19 Identity = 54/129 (41.86%), Postives = 74/129 (57.36%), Query Frame = 3
Query: 9 SYNRALEITGCESIETTLRTRRLLWAGTLLRMSGGRLPKRIMFGNLEGAVRRGRGGKEKEWTDCVQSDIRAF----GITGD-----------WETMA-VKAEV-WVEAVTKGGRRFMAAWRQEEEDAAR 344
SY +AL+ GC+S+E T+R RR+L+AG + R GRLPKR+MFG L G GRG E+ W C++ D++ F G T D W+ A V+ V W V +G RFMA+W + EE A+R
Sbjct: 565 SYAQALKRVGCQSVEATVRQRRVLFAGAVARQPDGRLPKRLMFGELVGGENPGRGSPEQNWLICLKDDLKMFEARHGSTPDKRSFFGIPKPDWDEAAKVEGGVPWHAGVLQGAERFMASWHKGEEKASR 693
BLAST of mRNA_A-nodosum_M_contig117.13.1 vs. uniprot
Match: A0A6H5JWS4_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWS4_9PHAE) HSP 1 Score: 90.9 bits (224), Expect = 2.200e-19 Identity = 53/129 (41.09%), Postives = 74/129 (57.36%), Query Frame = 3
Query: 9 SYNRALEITGCESIETTLRTRRLLWAGTLLRMSGGRLPKRIMFGNLEGAVRRGRGGKEKEWTDCVQSDIRAF----GITGDWETM-AVKAEVWVEA------------VTKGGRRFMAAWRQEEEDAAR 344
SY +AL+ GC+S+E T+R RRLL+AG + R GRLPKR+MFG L G G+G E+ W C++ D++ F G T D ++ V VW EA V +G RFMA+W + +E+A R
Sbjct: 176 SYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWLTCLKDDMKMFEARYGSTTDKPSVFGVPKLVWSEAAKVEGGVPWHAGVLQGAERFMASWHKGKEEANR 304 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig117.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig117.13.1 >prot_A-nodosum_M_contig117.13.1 ID=prot_A-nodosum_M_contig117.13.1|Name=mRNA_A-nodosum_M_contig117.13.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=115bp MTSYNRALEITGCESIETTLRTRRLLWAGTLLRMSGGRLPKRIMFGNLEGback to top mRNA from alignment at A-nodosum_M_contig117:169871..170217- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig117.13.1 ID=mRNA_A-nodosum_M_contig117.13.1|Name=mRNA_A-nodosum_M_contig117.13.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=347bp|location=Sequence derived from alignment at A-nodosum_M_contig117:169871..170217- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig117:169871..170217- >mRNA_A-nodosum_M_contig117.13.1 ID=mRNA_A-nodosum_M_contig117.13.1|Name=mRNA_A-nodosum_M_contig117.13.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=345bp|location=Sequence derived from alignment at A-nodosum_M_contig117:169871..170217- (Ascophyllum nodosum dioecious)back to top |