mRNA_A-nodosum_M_contig1167.14.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig1167.14.1 vs. uniprot
Match: D7FHZ0_ECTSI (Phosphorylated adapter RNA export protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHZ0_ECTSI) HSP 1 Score: 241 bits (614), Expect = 4.460e-74 Identity = 168/328 (51.22%), Postives = 200/328 (60.98%), Query Frame = 1
Query: 1 MFKHDDDVMDFGEDDDGATQEFLTGKLAALGIDEDLELSG--EEEENEDPAGGAKGVESAAPPKLSCSPHRACEASTEAEGPMTTERNQASA------ANSEEHCPSPSAAV----------------LRATNTAALEKCTA-EEGELLQMLNKPLQTSRGRLQGTRCGTILDSGGSGRRRGRPRGGKGKPYNLKE--KEQGRKYTIKECATWVCKRLNEPKYYLMCQVVREIGYNNSKRLLGRVQQIQEAGGMPTADGTRKRTPGGVFFTLLKEHMEPAKLKELYADELRVKREKERMRKVATKRRAAAADTGEDVSMPPRDPPRNR 903
M DDD MDFG DDDG +FLTGKLAALGIDEDLELSG EE++N PA S PP + + AST R+ A A A E C A + + A A + TA E+GEL+QM+++PL+TSRGR Q + DSG G +GK K+ K +GR TIKECA WVC+RL EPKYYLMCQVV IGYN ++ LL VQ+ QE GGMPTADG+RKRT GGVFFTLLK+HMEP++LKELYADELRVK+EK+R R+ A KR+A AA GEDV M PR+PPRNR
Sbjct: 1 MSTFDDDDMDFGGDDDG--DDFLTGKLAALGIDEDLELSGGEEEDDNRAPATDPAADSSNKPPGIVAPSPQQASASTAVAAVPAASRSTAPAPADDWGAPPSEGCSPGDAGIWGEVDSWGETRIATPTVEAPPAAGGGRGTAVEDGELVQMIDQPLRTSRGREQRS----ARDSGRGGGXXXXXXXXRGKRGRPKKDGKARGRNVTIKECAEWVCERLGEPKYYLMCQVVSTIGYNKTRDLLEAVQETQETGGMPTADGSRKRTAGGVFFTLLKKHMEPSRLKELYADELRVKKEKDRARRAANKRKAEAALAGEDV-MTPRNPPRNR 321
BLAST of mRNA_A-nodosum_M_contig1167.14.1 vs. uniprot
Match: A0A835ZKK4_9STRA (Phosphorylated adapter RNA export protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKK4_9STRA) HSP 1 Score: 107 bits (266), Expect = 1.390e-23 Identity = 50/106 (47.17%), Postives = 78/106 (73.58%), Query Frame = 1
Query: 484 GKGKPYNLKEKEQGRKYTIKECATWVCKRLNEPKYYLMCQVVREIGYNNSKRLLGRVQQIQEAGGMPTADGTRKRTPGGVFFTLLKEHMEPAKLKELYADELRVKR 801
G G P K ++ +++T+K+ A +C++L+EPKYYLMCQVV +G+N + RLL + QI+ GG+ TADG R+R+PGGVF TLL++ + P K+K +YA++ RV++
Sbjct: 148 GNGAPPRNKRRKPQQRWTVKDAAIRLCEQLDEPKYYLMCQVVWHLGFNKTNRLLKQTVQIERDGGLRTADGKRRRSPGGVFLTLLRDAVTPEKMKAIYAEDKRVQK 253
BLAST of mRNA_A-nodosum_M_contig1167.14.1 vs. uniprot
Match: A0A8J2X059_9STRA (Phosphorylated adapter RNA export protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X059_9STRA) HSP 1 Score: 73.9 bits (180), Expect = 4.540e-12 Identity = 47/101 (46.53%), Postives = 58/101 (57.43%), Query Frame = 1
Query: 571 LNEPKYYLMCQVVREIGYNNSKRLLGRVQQIQEAGGMPTADGTRKRTPGGVFFTLLKEHMEPAKLKELY-ADELRVKREKERMRKVATKRRAAAADTGEDV 870
L+E L+ + + IG +KRLL RV + Q GG+ TADG+RKRTPGGVFF LL++ M P K+L AD R KRE E RK KR G D
Sbjct: 95 LDEQNIRLLREAIIAIGAKAAKRLLKRVVETQRDGGLATADGSRKRTPGGVFFHLLRDEMTPEAYKQLMKADSKRKKRELEERRKQREKRAREGGTPGGDA 195
BLAST of mRNA_A-nodosum_M_contig1167.14.1 vs. uniprot
Match: A0A8J5D9L3_9CHEL (Phosphorylated adapter RNA export protein n=1 Tax=Nymphon striatum TaxID=424472 RepID=A0A8J5D9L3_9CHEL) HSP 1 Score: 73.9 bits (180), Expect = 2.760e-11 Identity = 34/86 (39.53%), Postives = 55/86 (63.95%), Query Frame = 1
Query: 484 GKGKPYNLKEKEQGRKYTIKECATWVCKRLNEPKYYLMCQVVREIGYNNSKRLLGRVQQIQEAGGMPTADGTRKRTPGGVFFTLLK 741
GK K +N ++ Q +K + +CK LNEPK++L+ V+ +G + LL ++++E GG+ T +G R+RTPGG++FTLLK
Sbjct: 189 GKHKHFNKCDEHQHKKNSFNRVTMKICKTLNEPKHHLIQSVINVVGETKAMELLKMTEEVEENGGLMTQNGKRRRTPGGIYFTLLK 274
BLAST of mRNA_A-nodosum_M_contig1167.14.1 vs. uniprot
Match: A0A6U9Q1X3_9CHLO (Phosphorylated adapter RNA export protein n=3 Tax=Picocystis salinarum TaxID=88271 RepID=A0A6U9Q1X3_9CHLO) HSP 1 Score: 72.0 bits (175), Expect = 4.660e-11 Identity = 44/108 (40.74%), Postives = 64/108 (59.26%), Query Frame = 1
Query: 559 VCKRLNEPKYYLMCQVVREIGYNNSKRLLGRVQQIQEAGGMPTADGTRKRTPGGVFFTLLKEHMEPAKLKELYADEL-RVKREKERMRKVATKRRAAAADTGEDVSMP 879
+C LNEPK LM + V +G + + LL VQ+++ GG T+DG RKRTPGGVF+ LLK+ + + + +YA+E R K K R + +R++ D E VS P
Sbjct: 120 ICMELNEPKQPLMRRCVDHLGIDYVQELLDEVQKVERDGGQMTSDGDRKRTPGGVFWNLLKQRLAAEEWESIYAEEKERQKAIKRRQHSLRRRRKSGNMDVDE-VSPP 226
BLAST of mRNA_A-nodosum_M_contig1167.14.1 vs. uniprot
Match: B7P4U5_IXOSC (Phosphorylated adapter RNA export protein (Fragment) n=6 Tax=Ixodes TaxID=6944 RepID=B7P4U5_IXOSC) HSP 1 Score: 69.7 bits (169), Expect = 5.930e-10 Identity = 43/114 (37.72%), Postives = 67/114 (58.77%), Query Frame = 1
Query: 451 GSGRRRGRPRGGKGKPYNLKEKEQGRKYTIKECATWVCKRLNEPKYYLMCQVVREIGYNNSKRLLGRVQQIQEAGGMPTADGTRKRTPGGVFFTLLKEHMEPAKLKELYADELR 792
G G R R + G KP + E+ + + E A + +RL EPK L+ +VV +G + S++LL + I+ AGG+ T D +R+RTPGGVFF LLK H ++ ++ +E+R
Sbjct: 177 GRGNRTARSKSGGSKPLSPSAMEED-ETVVAEMAADMAERLQEPKKDLLERVVSILGTSESRKLLTMTEDIEAAGGIMTRDKSRRRTPGGVFFYLLKAHTPRDQMLLIFEEEMR 289
BLAST of mRNA_A-nodosum_M_contig1167.14.1 vs. uniprot
Match: A0A5B8MI43_9CHLO (Phosphorylated adapter RNA export protein n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MI43_9CHLO) HSP 1 Score: 67.8 bits (164), Expect = 2.110e-9 Identity = 38/101 (37.62%), Postives = 61/101 (60.40%), Query Frame = 1
Query: 559 VCKRLNEPKYYLMCQVVREIGYNNSKRLLGRVQQIQEAGGMPTADGTRKRTPGGVFFTLLKEHMEPAKLKELYADELRVKREKERMRKVATKRRAAAADTG 861
VC++LNEPK +LM +V+ ++G L+ +V++++E GG ADGTR+RT GGVF LLK + + ++ DE +E ++ RK +R A + G
Sbjct: 151 VCQKLNEPKQHLMRKVMEQVGKIFIMELVDQVERVEEEGGQFVADGTRRRTKGGVFLNLLKAQVTKEQWDTIFEDE----KEAQKRRKAMKRRLRYAGEAG 247
BLAST of mRNA_A-nodosum_M_contig1167.14.1 vs. uniprot
Match: V3ZVT3_LOTGI (Phosphorylated adapter RNA export protein n=1 Tax=Lottia gigantea TaxID=225164 RepID=V3ZVT3_LOTGI) HSP 1 Score: 67.4 bits (163), Expect = 5.680e-9 Identity = 37/90 (41.11%), Postives = 57/90 (63.33%), Query Frame = 1
Query: 535 TIKECATWVCKRLNEPKYYLMCQVVREIGYNNSKRLLGRVQQIQEAGGMPTADGTRKRTPGGVFFTLLKEHMEPAK--LKELYADELRVK 798
++ + + K+LNEPK L+ +VV +G S LL + I+E+GGM +G R+RTPGGVFF LLK M+ K +K ++A+E ++K
Sbjct: 249 SVPQIVNAMVKQLNEPKVELITRVVETLGKKKSLELLYLTEDIEESGGMYVMNGERRRTPGGVFFQLLKMDMDVTKAHIKHIFAEEEKLK 338
BLAST of mRNA_A-nodosum_M_contig1167.14.1 vs. uniprot
Match: A0A7S3CA39_9CHLO (Phosphorylated adapter RNA export protein n=1 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S3CA39_9CHLO) HSP 1 Score: 65.1 bits (157), Expect = 1.840e-8 Identity = 37/107 (34.58%), Postives = 61/107 (57.01%), Query Frame = 1
Query: 559 VCKRLNEPKYYLMCQVVREIGYNNSKRLLGRVQQIQEAGGMPTADGTRKRTPGGVFFTLLKEHMEPAKLKELYADELRVKREKERMRKVATKRRAAAADTGEDVSMP 879
VC++LNEPK +LM +V+++ G LL + ++++E GG ADGTR+RT GGVF LLK + + ++ DE ++ ++ M++ A A+ D P
Sbjct: 159 VCQKLNEPKQHLMRKVLQQTGKVFVLDLLQQTEKVEEEGGQFVADGTRRRTKGGVFLNLLKSQVTKEQWDTIFEDEKEAQKRRKAMKRRLRYAGEAQAEKDGDAKSP 265
BLAST of mRNA_A-nodosum_M_contig1167.14.1 vs. uniprot
Match: K8F5A6_9CHLO (Phosphorylated adapter RNA export protein n=1 Tax=Bathycoccus prasinos TaxID=41875 RepID=K8F5A6_9CHLO) HSP 1 Score: 65.5 bits (158), Expect = 2.330e-8 Identity = 32/76 (42.11%), Postives = 48/76 (63.16%), Query Frame = 1
Query: 559 VCKRLNEPKYYLMCQVVREIGYNNSKRLLGRVQQIQEAGGMPTADGTRKRTPGGVFFTLLKEHMEPAKLKELYADE 786
+C +LNEPK LM + + +G L VQ I+ GGM TADG+R+RTPGGVF+ L K+ + ++++A+E
Sbjct: 114 ICNQLNEPKVSLMRRALDIVGGEMVSNLAVEVQNIESKGGMQTADGSRRRTPGGVFWALFKQRVSQEVYEDVFAEE 189 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1167.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1167.14.1 >prot_A-nodosum_M_contig1167.14.1 ID=prot_A-nodosum_M_contig1167.14.1|Name=mRNA_A-nodosum_M_contig1167.14.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=302bp MFKHDDDVMDFGEDDDGATQEFLTGKLAALGIDEDLELSGEEEENEDPAGback to top mRNA from alignment at A-nodosum_M_contig1167:127530..129287+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig1167.14.1 ID=mRNA_A-nodosum_M_contig1167.14.1|Name=mRNA_A-nodosum_M_contig1167.14.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1758bp|location=Sequence derived from alignment at A-nodosum_M_contig1167:127530..129287+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1167:127530..129287+ >mRNA_A-nodosum_M_contig1167.14.1 ID=mRNA_A-nodosum_M_contig1167.14.1|Name=mRNA_A-nodosum_M_contig1167.14.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=906bp|location=Sequence derived from alignment at A-nodosum_M_contig1167:127530..129287+ (Ascophyllum nodosum dioecious)back to top |