mRNA_A-nodosum_M_contig11660.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig11660.2.1
Unique NamemRNA_A-nodosum_M_contig11660.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig11660.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig11660contigA-nodosum_M_contig11660:3430..4712 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size696
Hectar predicted targeting categoryother localisation
Exons3
Cds size309
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866572.5560622-UTR-A-nodosum_M_contig11660:3429..34741680866572.5560622-UTR-A-nodosum_M_contig11660:3429..3474Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig11660 3430..3474 -
1680866572.57279-UTR-A-nodosum_M_contig11660:3783..40171680866572.57279-UTR-A-nodosum_M_contig11660:3783..4017Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig11660 3784..4017 -
1680866572.6451879-UTR-A-nodosum_M_contig11660:4401..44541680866572.6451879-UTR-A-nodosum_M_contig11660:4401..4454Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig11660 4402..4454 -
1680866572.6544642-UTR-A-nodosum_M_contig11660:4657..47121680866572.6544642-UTR-A-nodosum_M_contig11660:4657..4712Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig11660 4658..4712 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866572.564556-CDS-A-nodosum_M_contig11660:3474..37831680866572.564556-CDS-A-nodosum_M_contig11660:3474..3783Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig11660 3475..3783 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig11660.2.1prot_A-nodosum_M_contig11660.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig11660 3475..3783 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig11660.2.1

>prot_A-nodosum_M_contig11660.2.1 ID=prot_A-nodosum_M_contig11660.2.1|Name=mRNA_A-nodosum_M_contig11660.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=103bp
MSSSQQLFIFPARAVEPWEALEVNFFHTGTNSLVSNELILLKLDDAAKFP
FVFPIPSKRAEGVTPHVVPIFNVRHPPSRTKHRRSKLQLRCGKTPLSVVE
VW*
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mRNA from alignment at A-nodosum_M_contig11660:3430..4712-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig11660.2.1 ID=mRNA_A-nodosum_M_contig11660.2.1|Name=mRNA_A-nodosum_M_contig11660.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1283bp|location=Sequence derived from alignment at A-nodosum_M_contig11660:3430..4712- (Ascophyllum nodosum dioecious)
GTACCGAAGAGGACGAGATACCAATCGCGGAGCAATGATGGGCGAGGCTC
GAAAGGTACAGCGTGATTGGACTCAGATATGCCCATGTACTGCGAACTCG
CGAATTGAGGAAATTCCCACAGATGTCATCCAGTCGGATAAATGATTAAA
TACGAGATGCTGGGCGCTTGAATAGCTCGTTCGACTTATTTACGCCCTCC
TACCAGAGACCCAAGTGTACCATCGCAAGAAAACTACCCGAACTCGAACC
GCGAACAGGTCCAGATGGAAGACGCCAACAGCTGGTAGCTGAGCGTGAGC
CAGAAAGGACGGTAGGGCGACTTGCTTTACCCCTTTGTCAAAGGTTGACC
CTTTTATTTCAACCATCCCAAACGTCTCATGCGTTTGTTGACAGCAAATT
CCCACTCCCCCTAAAAAATTAGTCATTCACACATTCTTGATGAATAGAAA
GGAAATCCACAAGTTGCACGAACAAGGTATCATCCGCCCCTCCAAGTTGC
CGTTTTTCAAAGTCAGATCCGAGGAGAGCACCCACGGAATGTGAATGCAT
GACTGTTCTCTGGAGCGTAGCATATTCGGTAGTTCCTCGTAGGCCGACGC
TTCAGTCTTTTTACAGATTGCCCCATGCTGACATAACCTCAAGCTCTACA
TATGGGCACTCCGCCTCACGGGGAACGATTTTCCCGCCGAAGCAGAGCAA
GGTACAGCGGATTTGGACACCGTCTTCGATGCCGGAGGGTGCCAAGACCA
AAGGACGCCTGCCTCTTCCGTCTTTTATCTTGGAAGGATGGGCGTGTCGG
GCGCTGGGGGGGCAGGATCGAGCGCGAAGAATACATAAACTGTCCTGAAC
CGTGTCCTCTACTTGCTTACCGACGTCACCACCCTACGAGAGAACCATCA
GTACGTCCACCAGCTTCGACGGACGCAAAATGAGCAGCAGTCAACAACTT
TTCATTTTTCCGGCGCGCGCTGTAGAACCGTGGGAGGCACTAGAAGTCAA
CTTTTTTCATACTGGCACCAACTCTTTAGTTAGCAATGAACTTATTTTAC
TAAAGTTGGATGATGCAGCAAAGTTCCCCTTCGTATTTCCAATACCTAGC
AAGAGAGCAGAGGGAGTCACGCCGCACGTTGTACCTATCTTCAACGTTCG
GCACCCTCCGAGTCGTACGAAGCATCGGAGGTCAAAACTTCAACTGCGAT
GTGGTAAGACACCCCTGTCGGTGGTCGAGGTGTGGTAGAACGTCTAGGAG
GGTGGATGCTAGATATACTCGCGGAACTGTGTG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig11660:3430..4712-

>mRNA_A-nodosum_M_contig11660.2.1 ID=mRNA_A-nodosum_M_contig11660.2.1|Name=mRNA_A-nodosum_M_contig11660.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=309bp|location=Sequence derived from alignment at A-nodosum_M_contig11660:3430..4712- (Ascophyllum nodosum dioecious)
ATGAGCAGCAGTCAACAACTTTTCATTTTTCCGGCGCGCGCTGTAGAACC
GTGGGAGGCACTAGAAGTCAACTTTTTTCATACTGGCACCAACTCTTTAG
TTAGCAATGAACTTATTTTACTAAAGTTGGATGATGCAGCAAAGTTCCCC
TTCGTATTTCCAATACCTAGCAAGAGAGCAGAGGGAGTCACGCCGCACGT
TGTACCTATCTTCAACGTTCGGCACCCTCCGAGTCGTACGAAGCATCGGA
GGTCAAAACTTCAACTGCGATGTGGTAAGACACCCCTGTCGGTGGTCGAG
GTGTGGTAG
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