mRNA_A-nodosum_M_contig1164.4.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig1164.4.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE) HSP 1 Score: 68.2 bits (165), Expect = 5.710e-12 Identity = 31/57 (54.39%), Postives = 42/57 (73.68%), Query Frame = 1
Query: 1 PNTFKEAISLPKSAYWKEAADKEIQSLEKHGVYKLVPMSFVPSSQNVVGTRWVNKIK 171
PNT K+A+ LP++ WK A DKEI+SL+ VYKLVP + VP NV+G++WV K+K
Sbjct: 302 PNTCKKAMELPETKLWKAATDKEIKSLQDLKVYKLVPRTDVPLGHNVIGSKWVFKVK 358
BLAST of mRNA_A-nodosum_M_contig1164.4.1 vs. uniprot
Match: A0A498MIN3_LABRO (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Labeo rohita TaxID=84645 RepID=A0A498MIN3_LABRO) HSP 1 Score: 52.4 bits (124), Expect = 1.140e-6 Identity = 24/57 (42.11%), Postives = 37/57 (64.91%), Query Frame = 1
Query: 1 PNTFKEAISLPKSAYWKEAADKEIQSLEKHGVYKLVPMSFVPSSQNVVGTRWVNKIK 171
P T K+ +S+P A WKEA +KE++SL + V+ LV + P + VG++WV K+K
Sbjct: 36 PKTVKDVLSIPDKAKWKEAMEKEMESLYANDVWNLVEL---PKGRKAVGSKWVFKVK 89
BLAST of mRNA_A-nodosum_M_contig1164.4.1 vs. uniprot
Match: A0A498M2F0_LABRO (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Labeo rohita TaxID=84645 RepID=A0A498M2F0_LABRO) HSP 1 Score: 51.2 bits (121), Expect = 5.430e-6 Identity = 24/57 (42.11%), Postives = 36/57 (63.16%), Query Frame = 1
Query: 1 PNTFKEAISLPKSAYWKEAADKEIQSLEKHGVYKLVPMSFVPSSQNVVGTRWVNKIK 171
P T K+ +S P A WKEA +KE++SL + V+ LV + P + VG++WV K+K
Sbjct: 237 PKTVKDVLSSPDKAKWKEAMEKEMESLYANNVWNLVEL---PKGRKAVGSKWVFKVK 290
BLAST of mRNA_A-nodosum_M_contig1164.4.1 vs. uniprot
Match: A0A0L6VBK0_9BASI (Uncharacterized protein n=1 Tax=Puccinia sorghi TaxID=27349 RepID=A0A0L6VBK0_9BASI) HSP 1 Score: 49.3 bits (116), Expect = 2.570e-5 Identity = 25/57 (43.86%), Postives = 33/57 (57.89%), Query Frame = 1
Query: 1 PNTFKEAISLPKSAYWKEAADKEIQSLEKHGVYKLVPMSFVPSSQNVVGTRWVNKIK 171
PNTF+ AI + YWKEA +KEI S+E V++ S+ N + T WV KIK
Sbjct: 29 PNTFESAIRCTNAKYWKEAIEKEINSIENQEVWE----SYAEEPPNPLNTTWVFKIK 81
BLAST of mRNA_A-nodosum_M_contig1164.4.1 vs. uniprot
Match: A0A0L6VNL3_9BASI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Puccinia sorghi TaxID=27349 RepID=A0A0L6VNL3_9BASI) HSP 1 Score: 48.9 bits (115), Expect = 3.520e-5 Identity = 25/57 (43.86%), Postives = 33/57 (57.89%), Query Frame = 1
Query: 1 PNTFKEAISLPKSAYWKEAADKEIQSLEKHGVYKLVPMSFVPSSQNVVGTRWVNKIK 171
PNTF+ AI S YWK+A +KEI S+E H V++ + N + T WV KIK
Sbjct: 55 PNTFESAIRCNDSKYWKQAIEKEINSIESHEVWE----HYSEEPPNPLNTTWVFKIK 107
BLAST of mRNA_A-nodosum_M_contig1164.4.1 vs. uniprot
Match: A0A5H2YCK7_PRUDU (Transposable element protein n=3 Tax=Prunus dulcis TaxID=3755 RepID=A0A5H2YCK7_PRUDU) HSP 1 Score: 48.9 bits (115), Expect = 3.570e-5 Identity = 25/57 (43.86%), Postives = 38/57 (66.67%), Query Frame = 1
Query: 1 PNTFKEAISLPKSAYWKEAADKEIQSLEKHGVYKLVPMSFVPSSQNVVGTRWVNKIK 171
P+TF+EA + + W++A +EIQ+L+ G + LVP PS +N+VG RW+ KIK
Sbjct: 400 PHTFREAST---KSEWQQAMIEEIQALQTQGTWDLVPP---PSDKNIVGCRWIYKIK 450
BLAST of mRNA_A-nodosum_M_contig1164.4.1 vs. uniprot
Match: A0A074REC1_9AGAM (Putative Gag-Pol polyprotein/retrotransposon (Fragment) n=1 Tax=Rhizoctonia solani 123E TaxID=1423351 RepID=A0A074REC1_9AGAM) HSP 1 Score: 48.9 bits (115), Expect = 3.580e-5 Identity = 24/57 (42.11%), Postives = 34/57 (59.65%), Query Frame = 1
Query: 1 PNTFKEAISLPKSAYWKEAADKEIQSLEKHGVYKLVPMSFVPSSQNVVGTRWVNKIK 171
P TF EA++ P + W A +E++S++KHGVYK P +NVVG RW+ K
Sbjct: 435 PLTFAEAMARPDANLWLGAMVEELESIQKHGVYKETDR---PGDRNVVGCRWIFSFK 488
BLAST of mRNA_A-nodosum_M_contig1164.4.1 vs. uniprot
Match: X8J7X3_9AGAM (Copia-like polyprotein/retrotransposon (Fragment) n=1 Tax=Rhizoctonia solani AG-3 Rhs1AP TaxID=1086054 RepID=X8J7X3_9AGAM) HSP 1 Score: 48.9 bits (115), Expect = 3.590e-5 Identity = 24/57 (42.11%), Postives = 34/57 (59.65%), Query Frame = 1
Query: 1 PNTFKEAISLPKSAYWKEAADKEIQSLEKHGVYKLVPMSFVPSSQNVVGTRWVNKIK 171
P TF EA++ P + W A +E++S++KHGVYK P +NVVG RW+ K
Sbjct: 907 PLTFAEAMARPDANLWLGAMVEELESIQKHGVYKETDR---PGDRNVVGCRWIFSFK 960
BLAST of mRNA_A-nodosum_M_contig1164.4.1 vs. uniprot
Match: UPI000A2B3F76 (uncharacterized protein LOC110271126 n=1 Tax=Arachis ipaensis TaxID=130454 RepID=UPI000A2B3F76) HSP 1 Score: 47.8 bits (112), Expect = 5.220e-5 Identity = 27/57 (47.37%), Postives = 35/57 (61.40%), Query Frame = 1
Query: 1 PNTFKEAISLPKSAYWKEAADKEIQSLEKHGVYKLVPMSFVPSSQNVVGTRWVNKIK 171
P TF+EA S P W++A +E+Q+LEK + LV P Q VVG+RWV KIK
Sbjct: 33 PKTFREASSNPN---WQQAMQEELQALEKSHTWDLVDP---PCDQEVVGSRWVYKIK 83
BLAST of mRNA_A-nodosum_M_contig1164.4.1 vs. uniprot
Match: A0A438CUE3_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=2 Tax=Vitis vinifera TaxID=29760 RepID=A0A438CUE3_VITVI) HSP 1 Score: 48.1 bits (113), Expect = 6.710e-5 Identity = 24/57 (42.11%), Postives = 37/57 (64.91%), Query Frame = 1
Query: 1 PNTFKEAISLPKSAYWKEAADKEIQSLEKHGVYKLVPMSFVPSSQNVVGTRWVNKIK 171
PN+FKEA +P+ W++A E ++L + + LVP PS+QN++G RWV K+K
Sbjct: 577 PNSFKEAAKVPE---WQQAMHLEFEALMNNKTWVLVPP---PSNQNIIGCRWVYKLK 627 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1164.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1164.4.1 >prot_A-nodosum_M_contig1164.4.1 ID=prot_A-nodosum_M_contig1164.4.1|Name=mRNA_A-nodosum_M_contig1164.4.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=57bp PNTFKEAISLPKSAYWKEAADKEIQSLEKHGVYKLVPMSFVPSSQNVVGTback to top mRNA from alignment at A-nodosum_M_contig1164:99745..99915+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig1164.4.1 ID=mRNA_A-nodosum_M_contig1164.4.1|Name=mRNA_A-nodosum_M_contig1164.4.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=171bp|location=Sequence derived from alignment at A-nodosum_M_contig1164:99745..99915+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1164:99745..99915+ >mRNA_A-nodosum_M_contig1164.4.1 ID=mRNA_A-nodosum_M_contig1164.4.1|Name=mRNA_A-nodosum_M_contig1164.4.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=171bp|location=Sequence derived from alignment at A-nodosum_M_contig1164:99745..99915+ (Ascophyllum nodosum dioecious)back to top |