mRNA_A-nodosum_M_contig1164.4.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1164.4.1
Unique NamemRNA_A-nodosum_M_contig1164.4.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig1164.4.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 5.710e-12
Identity = 31/57 (54.39%), Postives = 42/57 (73.68%), Query Frame = 1
Query:    1 PNTFKEAISLPKSAYWKEAADKEIQSLEKHGVYKLVPMSFVPSSQNVVGTRWVNKIK 171
            PNT K+A+ LP++  WK A DKEI+SL+   VYKLVP + VP   NV+G++WV K+K
Sbjct:  302 PNTCKKAMELPETKLWKAATDKEIKSLQDLKVYKLVPRTDVPLGHNVIGSKWVFKVK 358          
BLAST of mRNA_A-nodosum_M_contig1164.4.1 vs. uniprot
Match: A0A498MIN3_LABRO (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Labeo rohita TaxID=84645 RepID=A0A498MIN3_LABRO)

HSP 1 Score: 52.4 bits (124), Expect = 1.140e-6
Identity = 24/57 (42.11%), Postives = 37/57 (64.91%), Query Frame = 1
Query:    1 PNTFKEAISLPKSAYWKEAADKEIQSLEKHGVYKLVPMSFVPSSQNVVGTRWVNKIK 171
            P T K+ +S+P  A WKEA +KE++SL  + V+ LV +   P  +  VG++WV K+K
Sbjct:   36 PKTVKDVLSIPDKAKWKEAMEKEMESLYANDVWNLVEL---PKGRKAVGSKWVFKVK 89          
BLAST of mRNA_A-nodosum_M_contig1164.4.1 vs. uniprot
Match: A0A498M2F0_LABRO (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Labeo rohita TaxID=84645 RepID=A0A498M2F0_LABRO)

HSP 1 Score: 51.2 bits (121), Expect = 5.430e-6
Identity = 24/57 (42.11%), Postives = 36/57 (63.16%), Query Frame = 1
Query:    1 PNTFKEAISLPKSAYWKEAADKEIQSLEKHGVYKLVPMSFVPSSQNVVGTRWVNKIK 171
            P T K+ +S P  A WKEA +KE++SL  + V+ LV +   P  +  VG++WV K+K
Sbjct:  237 PKTVKDVLSSPDKAKWKEAMEKEMESLYANNVWNLVEL---PKGRKAVGSKWVFKVK 290          
BLAST of mRNA_A-nodosum_M_contig1164.4.1 vs. uniprot
Match: A0A0L6VBK0_9BASI (Uncharacterized protein n=1 Tax=Puccinia sorghi TaxID=27349 RepID=A0A0L6VBK0_9BASI)

HSP 1 Score: 49.3 bits (116), Expect = 2.570e-5
Identity = 25/57 (43.86%), Postives = 33/57 (57.89%), Query Frame = 1
Query:    1 PNTFKEAISLPKSAYWKEAADKEIQSLEKHGVYKLVPMSFVPSSQNVVGTRWVNKIK 171
            PNTF+ AI    + YWKEA +KEI S+E   V++    S+     N + T WV KIK
Sbjct:   29 PNTFESAIRCTNAKYWKEAIEKEINSIENQEVWE----SYAEEPPNPLNTTWVFKIK 81          
BLAST of mRNA_A-nodosum_M_contig1164.4.1 vs. uniprot
Match: A0A0L6VNL3_9BASI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Puccinia sorghi TaxID=27349 RepID=A0A0L6VNL3_9BASI)

HSP 1 Score: 48.9 bits (115), Expect = 3.520e-5
Identity = 25/57 (43.86%), Postives = 33/57 (57.89%), Query Frame = 1
Query:    1 PNTFKEAISLPKSAYWKEAADKEIQSLEKHGVYKLVPMSFVPSSQNVVGTRWVNKIK 171
            PNTF+ AI    S YWK+A +KEI S+E H V++     +     N + T WV KIK
Sbjct:   55 PNTFESAIRCNDSKYWKQAIEKEINSIESHEVWE----HYSEEPPNPLNTTWVFKIK 107          
BLAST of mRNA_A-nodosum_M_contig1164.4.1 vs. uniprot
Match: A0A5H2YCK7_PRUDU (Transposable element protein n=3 Tax=Prunus dulcis TaxID=3755 RepID=A0A5H2YCK7_PRUDU)

HSP 1 Score: 48.9 bits (115), Expect = 3.570e-5
Identity = 25/57 (43.86%), Postives = 38/57 (66.67%), Query Frame = 1
Query:    1 PNTFKEAISLPKSAYWKEAADKEIQSLEKHGVYKLVPMSFVPSSQNVVGTRWVNKIK 171
            P+TF+EA +    + W++A  +EIQ+L+  G + LVP    PS +N+VG RW+ KIK
Sbjct:  400 PHTFREAST---KSEWQQAMIEEIQALQTQGTWDLVPP---PSDKNIVGCRWIYKIK 450          
BLAST of mRNA_A-nodosum_M_contig1164.4.1 vs. uniprot
Match: A0A074REC1_9AGAM (Putative Gag-Pol polyprotein/retrotransposon (Fragment) n=1 Tax=Rhizoctonia solani 123E TaxID=1423351 RepID=A0A074REC1_9AGAM)

HSP 1 Score: 48.9 bits (115), Expect = 3.580e-5
Identity = 24/57 (42.11%), Postives = 34/57 (59.65%), Query Frame = 1
Query:    1 PNTFKEAISLPKSAYWKEAADKEIQSLEKHGVYKLVPMSFVPSSQNVVGTRWVNKIK 171
            P TF EA++ P +  W  A  +E++S++KHGVYK       P  +NVVG RW+   K
Sbjct:  435 PLTFAEAMARPDANLWLGAMVEELESIQKHGVYKETDR---PGDRNVVGCRWIFSFK 488          
BLAST of mRNA_A-nodosum_M_contig1164.4.1 vs. uniprot
Match: X8J7X3_9AGAM (Copia-like polyprotein/retrotransposon (Fragment) n=1 Tax=Rhizoctonia solani AG-3 Rhs1AP TaxID=1086054 RepID=X8J7X3_9AGAM)

HSP 1 Score: 48.9 bits (115), Expect = 3.590e-5
Identity = 24/57 (42.11%), Postives = 34/57 (59.65%), Query Frame = 1
Query:    1 PNTFKEAISLPKSAYWKEAADKEIQSLEKHGVYKLVPMSFVPSSQNVVGTRWVNKIK 171
            P TF EA++ P +  W  A  +E++S++KHGVYK       P  +NVVG RW+   K
Sbjct:  907 PLTFAEAMARPDANLWLGAMVEELESIQKHGVYKETDR---PGDRNVVGCRWIFSFK 960          
BLAST of mRNA_A-nodosum_M_contig1164.4.1 vs. uniprot
Match: UPI000A2B3F76 (uncharacterized protein LOC110271126 n=1 Tax=Arachis ipaensis TaxID=130454 RepID=UPI000A2B3F76)

HSP 1 Score: 47.8 bits (112), Expect = 5.220e-5
Identity = 27/57 (47.37%), Postives = 35/57 (61.40%), Query Frame = 1
Query:    1 PNTFKEAISLPKSAYWKEAADKEIQSLEKHGVYKLVPMSFVPSSQNVVGTRWVNKIK 171
            P TF+EA S P    W++A  +E+Q+LEK   + LV     P  Q VVG+RWV KIK
Sbjct:   33 PKTFREASSNPN---WQQAMQEELQALEKSHTWDLVDP---PCDQEVVGSRWVYKIK 83          
BLAST of mRNA_A-nodosum_M_contig1164.4.1 vs. uniprot
Match: A0A438CUE3_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=2 Tax=Vitis vinifera TaxID=29760 RepID=A0A438CUE3_VITVI)

HSP 1 Score: 48.1 bits (113), Expect = 6.710e-5
Identity = 24/57 (42.11%), Postives = 37/57 (64.91%), Query Frame = 1
Query:    1 PNTFKEAISLPKSAYWKEAADKEIQSLEKHGVYKLVPMSFVPSSQNVVGTRWVNKIK 171
            PN+FKEA  +P+   W++A   E ++L  +  + LVP    PS+QN++G RWV K+K
Sbjct:  577 PNSFKEAAKVPE---WQQAMHLEFEALMNNKTWVLVPP---PSNQNIIGCRWVYKLK 627          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1164.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5L6R7_9PHAE5.710e-1254.39Integrase catalytic domain-containing protein n=1 ... [more]
A0A498MIN3_LABRO1.140e-642.11Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A498M2F0_LABRO5.430e-642.11Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A0L6VBK0_9BASI2.570e-543.86Uncharacterized protein n=1 Tax=Puccinia sorghi Ta... [more]
A0A0L6VNL3_9BASI3.520e-543.86Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5H2YCK7_PRUDU3.570e-543.86Transposable element protein n=3 Tax=Prunus dulcis... [more]
A0A074REC1_9AGAM3.580e-542.11Putative Gag-Pol polyprotein/retrotransposon (Frag... [more]
X8J7X3_9AGAM3.590e-542.11Copia-like polyprotein/retrotransposon (Fragment) ... [more]
UPI000A2B3F765.220e-547.37uncharacterized protein LOC110271126 n=1 Tax=Arach... [more]
A0A438CUE3_VITVI6.710e-542.11Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1164contigA-nodosum_M_contig1164:99745..99915 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog160860.XP_007358330.1
PFAMsDUF4219,RVT_2,Retrotran_gag_2,rve
Model size171
Max annot lvl4751|Fungi
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue1.37e-08
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3NUZ7@4751|Fungi,3UY7N@5204|Basidiomycota,22B2X@155619|Agaricomycetes,3H6HR@355688|Agaricomycetes incertae sedis
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
Cds size171
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866570.1949925-CDS-A-nodosum_M_contig1164:99744..999151680866570.1949925-CDS-A-nodosum_M_contig1164:99744..99915Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1164 99745..99915 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1164.4.1prot_A-nodosum_M_contig1164.4.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1164 99745..99915 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1164.4.1

>prot_A-nodosum_M_contig1164.4.1 ID=prot_A-nodosum_M_contig1164.4.1|Name=mRNA_A-nodosum_M_contig1164.4.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=57bp
PNTFKEAISLPKSAYWKEAADKEIQSLEKHGVYKLVPMSFVPSSQNVVGT
RWVNKIK
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mRNA from alignment at A-nodosum_M_contig1164:99745..99915+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1164.4.1 ID=mRNA_A-nodosum_M_contig1164.4.1|Name=mRNA_A-nodosum_M_contig1164.4.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=171bp|location=Sequence derived from alignment at A-nodosum_M_contig1164:99745..99915+ (Ascophyllum nodosum dioecious)
CCAAACACCTTTAAGGAGGCGATAAGTCTTCCGAAATCAGCGTATTGGAA GGAAGCCGCAGACAAGGAAATTCAAAGTCTGGAGAAGCACGGCGTCTACA AGCTAGTACCGATGTCCTTTGTCCCCTCTTCTCAAAATGTAGTCGGTACT CGGTGGGTAAATAAAATCAAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1164:99745..99915+

>mRNA_A-nodosum_M_contig1164.4.1 ID=mRNA_A-nodosum_M_contig1164.4.1|Name=mRNA_A-nodosum_M_contig1164.4.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=171bp|location=Sequence derived from alignment at A-nodosum_M_contig1164:99745..99915+ (Ascophyllum nodosum dioecious)
CCAAACACCTTTAAGGAGGCGATAAGTCTTCCGAAATCAGCGTATTGGAA
GGAAGCCGCAGACAAGGAAATTCAAAGTCTGGAGAAGCACGGCGTCTACA
AGCTAGTACCGATGTCCTTTGTCCCCTCTTCTCAAAATGTAGTCGGTACT
CGGTGGGTAAATAAAATCAAG
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