mRNA_A-nodosum_M_contig1163.4.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1163.4.1
Unique NamemRNA_A-nodosum_M_contig1163.4.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1163.4.1 vs. uniprot
Match: D7FSB1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSB1_ECTSI)

HSP 1 Score: 265 bits (678), Expect = 2.130e-82
Identity = 142/204 (69.61%), Postives = 158/204 (77.45%), Query Frame = 1 
Query:  283 MAVGENNFDRLKANALDWRPESAERIAWAQVFLSLLTQASSLAKFPSYNVVLGFWGLYSVFSKSLQATQVYIGLLFFSVILDITFCSIWGSNNAGIFDGNTAKFCLAMLILNMLVKCTAIYSFLRYYKELEAGVIHPPYNRSATRRRRPTKSEQGRALAGGGSTYDMEPMSPGEEEAPIGSPQGTASLFSAGSAASFALSPKRR 894
            M VGENNFDRL  +AL WRPESAER AW QVF SLLTQASSLA FPSYNVVLG WGLYSV++KSLQ+TQVY+GLL FS++LDI FCSIWGSN+AGIFDG+TA FCL MLILNML K  A+Y FLR+YKE+E+G I P     A     P K + GR  AGG   YDM PMS  EE AP+GSP   ASL S+GSAASFALSPK R
Sbjct:    1 MPVGENNFDRLAKSALRWRPESAERTAWMQVFFSLLTQASSLAAFPSYNVVLGLWGLYSVYTKSLQSTQVYLGLLCFSILLDIIFCSIWGSNDAGIFDGSTASFCLVMLILNMLAKLAAVYCFLRFYKEMESGAIRPQERLGA-----PAK-QGGRQSAGGRGAYDMAPMSTHEERAPVGSPD--ASLMSSGSAASFALSPKGR 196
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BLAST of mRNA_A-nodosum_M_contig1163.4.1 vs. uniprot
Match: A0A835YRK6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRK6_9STRA)

HSP 1 Score: 152 bits (383), Expect = 1.170e-38
Identity = 91/198 (45.96%), Postives = 115/198 (58.08%), Query Frame = 1 
Query:  283 MAVGENNFDRLKANALDWRPESAERIAWAQVFLSLLTQASSLAKFPSYNVVLGFWGLYSVFSKSLQATQVYIGLLFFSVILDITFCSIWGSNNAGIFDGNTAKFCLAMLILNMLVKCTAIYSFLRYYKELEAGVIHP---PYNRSATRRRRPTKSEQGRALAGGGSTYDMEPMSPGEEEAPIGSPQGTASLFSAGSAA 867
            MA G N+F+R++   L W PE  ER AW QVFLS+LTQ    A FPSYNVVLGFWGLY  F++S QA   Y+  L  S++LDI +CS+WGSN A +FDG TA FCL MLI NM VK  ++  F + +K L A +      P NR A+        +Q R   G GS  +M      EE A + + Q  A     G+AA
Sbjct:    1 MAPGVNHFNRIRKELLTWHPEYVERSAWIQVFLSILTQLGGEASFPSYNVVLGFWGLYVAFTRSFQACNCYLWFLAASILLDIIYCSVWGSNKAKVFDGPTAIFCLVMLIFNMGVKAVSLLYFKQLHKTLVAELTDRALRPANRRASIN---LALKQARKEGGRGSVTEMT----AEEAAAVANLQQEAGDVQGGAAA 191
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1163.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FSB1_ECTSI2.130e-8269.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YRK6_9STRA1.170e-3845.96Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1163contigA-nodosum_M_contig1163:4469..8697 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog42099.EPrPV00000013193
PFAMsWW
Model size1763
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons5
Evalue0.000852
EggNOG OGs2A29N@1|root,2RY2G@2759|Eukaryota,1MH23@121069|Pythiales
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-20_004850.1
Descriptionfunction. Source PGD
Cds size621
COG categoryS
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1163.4.1prot_A-nodosum_M_contig1163.4.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1163 4751..7837 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866568.6709085-UTR-A-nodosum_M_contig1163:4468..47501680866568.6709085-UTR-A-nodosum_M_contig1163:4468..4750Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1163 4469..4750 +
1680866568.749793-UTR-A-nodosum_M_contig1163:7837..86971680866568.749793-UTR-A-nodosum_M_contig1163:7837..8697Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1163 7838..8697 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866568.6838298-CDS-A-nodosum_M_contig1163:4750..48691680866568.6838298-CDS-A-nodosum_M_contig1163:4750..4869Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1163 4751..4869 +
1680866568.6934822-CDS-A-nodosum_M_contig1163:5267..53571680866568.6934822-CDS-A-nodosum_M_contig1163:5267..5357Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1163 5268..5357 +
1680866568.7126048-CDS-A-nodosum_M_contig1163:5866..59251680866568.7126048-CDS-A-nodosum_M_contig1163:5866..5925Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1163 5867..5925 +
1680866568.72729-CDS-A-nodosum_M_contig1163:6754..70361680866568.72729-CDS-A-nodosum_M_contig1163:6754..7036Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1163 6755..7036 +
1680866568.7360034-CDS-A-nodosum_M_contig1163:7766..78371680866568.7360034-CDS-A-nodosum_M_contig1163:7766..7837Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1163 7767..7837 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1163.4.1

>prot_A-nodosum_M_contig1163.4.1 ID=prot_A-nodosum_M_contig1163.4.1|Name=mRNA_A-nodosum_M_contig1163.4.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=207bp
MAVGENNFDRLKANALDWRPESAERIAWAQVFLSLLTQASSLAKFPSYNV
VLGFWGLYSVFSKSLQATQVYIGLLFFSVILDITFCSIWGSNNAGIFDGN
TAKFCLAMLILNMLVKCTAIYSFLRYYKELEAGVIHPPYNRSATRRRRPT
KSEQGRALAGGGSTYDMEPMSPGEEEAPIGSPQGTASLFSAGSAASFALS
PKRRDG*
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mRNA from alignment at A-nodosum_M_contig1163:4469..8697+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1163.4.1 ID=mRNA_A-nodosum_M_contig1163.4.1|Name=mRNA_A-nodosum_M_contig1163.4.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=4229bp|location=Sequence derived from alignment at A-nodosum_M_contig1163:4469..8697+ (Ascophyllum nodosum dioecious)
CCCATATGTACAGTGTGTTCAAATCTCAAATAAAATTGATGCTGATCTGC
ATATCGAGTTGAACCCTATCGAGAAGCAAGTGTGCGTATCATATTCAGAG
AAAATCAAAACGATTCGCCAATCTTATTTCATAAGACAGAAGAGGGCGCA
ACTTGTTTCACTTGGTGGTACCTTGGGTGCGCGCTTGACACTCGACCGAA
GATTAATTTAGTGTGCTCGAAAACCACAGTAATATCGACAGAGGGCAGTC
ACGAATTGCTCGTGGCAAAATCTGCGTTAAACATGGCTGTCGGAGAAAAC
AATTTCGATCGCTTGAAGGCAAACGCTCTAGATTGGCGTCCCGAGAGCGC
AGAACGCATTGCTTGGGCGCAGGTCTTCCTGTCTCTTCTCACTCAAGCAA
GGTACGCTGCAGTGTGTGTGTTGCCACACCATTTATTCTGAACGTCAGAC
TATACTTGTGGACGCACCAGACGGGGTCCCACAGGATTTTTTCTCCACCT
TTCTTCTGCGGTGCTTGCCTTAATTTTTATCGCGAGAAGGATTCAGCCGT
GCGTTTCCCTCGTCGATCGTGAGGTCGAATTTTGGGTATTATCCAATCAG
CTTCCAAAATGTCAAATGCACTTCAGGACTATACTTAGTATTACAGGATC
CTTTGATAATACGAGTACCCTGGTACATACTTCGAAGTATTATTTAAAAA
ATGTTAAAAGTGAGAGAACCTCCTATGACGAATCCCAGATACCTTGTTCA
GTACATATTTTCTGTCCCACACGACTCGGTGTCGGTGTCATTCGCGTAGC
TCACTGGCAAAGTTTCCATCGTACAATGTGGTGCTCGGCTTCTGGGGCCT
GTACAGCGTTTTTAGCAAGAGTCTACAGGCCACACAAGTGTGAGTGCACG
CGTCATTAATATTCTCCCCGCTTCCATTTACCGTACTAATATACGAAGCA
TTGCGGTACTACTACTGTATGAAGTACAGTACCTGTACATATTACATGTT
TTCGGAATCCCGTGAACTAGGCTCGAAAGTATCTTATTGTTTGGGATACT
GTACAACAGCACCCGGTTGACAGAACCTTTTGAGTTGAGAACGATGCTTG
TGCGATACCAGGTAAGTTTTATTCATCGGCCCTTGAGGTCTGACGCCACG
ATTCACAATCGTGCTGACTGCCATGTATAATCAAATATTGATAGTAGAGA
GTATGTATATTATATGTGATCCAGGGTCGGTCTCCGACCGGCCTGGCCCA
TAGTGTACTTTTTTATTGAAGCGTGCCGCCTTGTTTTAAATGAATATCGA
AACTCATCGGTCTCGCAGACTGATAGTAATAATACGTAGTGGGATTCGCC
GCGCTGCAATTTCTTTAAATAATATAATACCCTTCCTTCCCTTGACAGGT
ATATTGGCTTGCTTTTCTTCTCCGTCATCCTGGATATCACGTTCTGTTCT
ATTTGGGGTAAGTTTATGAAAAATCTGAACGCATCCAAACCTTCCAACGA
TCCATGTACCTCTACCGTCAAAGTACAATATAATAAAATGATCACGCTCT
TACCGTCAAAACTACGAAGAAAAGTATGCTCCCGCCAAACGGCAAATCAG
GACCCGTCGTTCTGCAGAATTGTATCATACGGGTCTACAGCACTCGGCAG
ATATTTTCGCCCTGCGACTTTTCATTATTATATAGTATAGTCTAGTGCTT
TTCATAATACTTCGAAGGACTTGAGTACCAGGCATCAGATACTGCTACTA
CTAGACTATAGTATAATCTCTGTATCGTACATCTTTGAATCGTATTCTAC
AGTAATTCCGGCCGTTCGCAACGACGAAGTAAGCCACCGTTTCGCTCTTC
CTTCGTGAATATTATTATATACAGTAGTCTATACCGTATAGTCTATATAG
TCTATATAGTCTATATAGTCTACATATTATTATATATTAATATTATAGTA
CTGCTGCACTGTACGTGAATAATGGACGTCCATTTTTACATGATAAGCAT
CCATAAGTCACCCGATACACCACCAGAAGAGGAATGATGTCTCGTTGAAG
GTACGGAACTCGCTTGAGAGCCCCGAGCGAATCAGTTAGTATTAGTATTA
ATCGTCGAATTAGGTTCCGAGCTACCAGGTAAGTCTTTGGAAATAATTCA
ATGTGAGAAGAAAGATTTCTGGATGGAGGAAAACCTTTGTCTCCAGGGAC
GCACGATAACACACTGTATTCCATGCGAGATCGGGTTTGTAATCCGACAT
CTTCCGTCACGATTGGCCATGACTGGTTATCGTCAGGGAGCAACAATGCA
GGAATCTTTGACGGAAACACGGCCAAGTTCTGCCTCGCCATGCTCATCTT
AAACATGTTGGTCAAATGCACCGCGATATACAGCTTCTTGAGGTACTACA
AGGAGTTGGAAGCTGGCGTTATCCACCCTCCTTATAATCGATCGGCCACG
AGACGTCGTCGGCCGACGAAGAGTGAGCAGGGCCGTGCCTTAGCTGGCGG
CGGTAGCACATACGATATGGAACCAATGTCGCCGGGAGAAGAAGAAGCTC
CTATCGGATCGCCTCAGGGTAAGGCGAGACCTGACACATGGCACATGGCA
CAAGAACCGTTTATGAATCCCTCTTTACTTGGTTTCTTTCTCAAGAGACT
GCTGAGGTATCTTCTCGGTGTCTACCCTGCTATTATATATAGTGATCAGC
TCTGCCTCAGATTGTGCTTTAATTTGCATCTCCTCCCTTTGCCGAGTGCT
CTCGAGTTATCGGTAATCTGTATTAAACATTGTTGTCATACTATGGTATA
TATTCTCGCTAAATCTCTCTTTGCCCTGGACGGCAACAAACATTTTCTAC
CAATTCCAGTATCGACAGGGGCAGCTCTTTCCTCTGAGCGTCTCCCCTAC
ACGACTGGAGTCCTGTCCTAAGTTTTCGCAATCAGCGTTTGCCTGTTACT
GCCGGTCAGCCCTCCTTGCGTAAGCCCAACGAGCTACAAGTCAAGCGCAG
TCAGCCCTAAAAACGCCATTCTTCGTTATCCAACAGCTTTACAGCAACCT
GTTCTTAATTGGCATAAAAATAATTTACTACGTTGTTGAGATAAGACTAC
TACCTCAGTCGTCGCGAATTGAGGGTGGTATTAGTAGTTGTTGTTTTCAA
CAACCGGTTTCTCGCCCAATATATCTTGTCTTATCCTCTGAAACATGACG
TCTCGATATTCGCGCGTTCGTCGTTCTCTCCTCGCTCATGTTGCACGCCT
TAACGCCTTAACGCCTTAACGCTTTAAACCAACTTCCTACTTGTACAGGT
ACGGCGAGCCTGTTCAGTGCAGGGAGCGCAGCATCATTTGCTCTCTCCCC
AAAGCGTCGCGACGGGTAACTTTGAGTATCTAAGCTGGGTGCATCAGGTT
CGGCACGTATCTCCACAAAGCAGCAACGGATATCGTTGGTGCTCCCTGAC
TGGTCTCGTGACGATGCTGCTACAAGGATATAGAGGACGAGTTTGGCATC
GTGAGACACAAAATTATAGTAACTAACGGCGACACAACAGAGTGGCAGTC
AGTCGTACATGGTCTTCGAAAGCCGTTTGTTTCCGCGCTGTTTCCGTCTA
TTTTACTAAATATTAACAATTAATAGGACTGCCTGCCTGCCGTAGGCTGC
CCCTGAGATGGCGTTTTTACATGGCCAATGAACTATGTTCGTTTCGATAA
GTTCGAAGTAGGTTCTTGGTGTTGGTCCTGACTGGGTGGTGTATACTATT
ATTGTAGACTATATAAACTAGTAGTAGAAGAGGTACAGTATTAGGCAGTG
GGTGTCAATCCACTTGTTGACTACAATATGAGGATCACGGTGAAGAGAGT
ATTAATATAATAGTTGCGGCACTTACTTGTAGCATATGATAGTAGGGAGG
AAGTATTTTTAATAGGTGCAGTGCTCAGGCATAATGATAGCAATAATAAT
ATATGCCTTGCAGGTAAGAGAGATTTTGGGGTGACGATTTGGAGTGGCCA
CGTTGGGGTACCTCACTTTTCGTCTTTTAATATGGTTAATTACAGTAGAT
CTACAAGCCTGTCACTACTCTGTAGAACGCTACAACCCGATTGGCCAGCT
CTATTCGACACGCCGAGGCGTCTAGAACAACTATTTTCAGGTGAACAACA
AAGTTTGGTCTTTTCTGGATTATGTTGAAGGCATCTGCTGATCGCCCTCT
TCGCCTTTCTTCAAATCTTTGACCCAAAC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1163:4469..8697+

>mRNA_A-nodosum_M_contig1163.4.1 ID=mRNA_A-nodosum_M_contig1163.4.1|Name=mRNA_A-nodosum_M_contig1163.4.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=621bp|location=Sequence derived from alignment at A-nodosum_M_contig1163:4469..8697+ (Ascophyllum nodosum dioecious)
ATGGCTGTCGGAGAAAACAATTTCGATCGCTTGAAGGCAAACGCTCTAGA
TTGGCGTCCCGAGAGCGCAGAACGCATTGCTTGGGCGCAGGTCTTCCTGT
CTCTTCTCACTCAAGCAAGCTCACTGGCAAAGTTTCCATCGTACAATGTG
GTGCTCGGCTTCTGGGGCCTGTACAGCGTTTTTAGCAAGAGTCTACAGGC
CACACAAGTGTATATTGGCTTGCTTTTCTTCTCCGTCATCCTGGATATCA
CGTTCTGTTCTATTTGGGGGAGCAACAATGCAGGAATCTTTGACGGAAAC
ACGGCCAAGTTCTGCCTCGCCATGCTCATCTTAAACATGTTGGTCAAATG
CACCGCGATATACAGCTTCTTGAGGTACTACAAGGAGTTGGAAGCTGGCG
TTATCCACCCTCCTTATAATCGATCGGCCACGAGACGTCGTCGGCCGACG
AAGAGTGAGCAGGGCCGTGCCTTAGCTGGCGGCGGTAGCACATACGATAT
GGAACCAATGTCGCCGGGAGAAGAAGAAGCTCCTATCGGATCGCCTCAGG
GTACGGCGAGCCTGTTCAGTGCAGGGAGCGCAGCATCATTTGCTCTCTCC
CCAAAGCGTCGCGACGGGTAA
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