mRNA_A-nodosum_M_contig1162.3.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1162.3.1
Unique NamemRNA_A-nodosum_M_contig1162.3.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1162.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1162contigA-nodosum_M_contig1162:43349..50395 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2710
Hectar predicted targeting categoryother localisation
Exons6
Cds size723
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1162.3.1prot_A-nodosum_M_contig1162.3.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1162 45126..50185 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866566.91028-UTR-A-nodosum_M_contig1162:43348..451251680866566.91028-UTR-A-nodosum_M_contig1162:43348..45125Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1162 43349..45125 -
1680866566.9801102-UTR-A-nodosum_M_contig1162:50185..503951680866566.9801102-UTR-A-nodosum_M_contig1162:50185..50395Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1162 50186..50395 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866566.9239423-CDS-A-nodosum_M_contig1162:45125..452201680866566.9239423-CDS-A-nodosum_M_contig1162:45125..45220Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1162 45126..45220 -
1680866566.9336548-CDS-A-nodosum_M_contig1162:45654..458111680866566.9336548-CDS-A-nodosum_M_contig1162:45654..45811Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1162 45655..45811 -
1680866566.9423018-CDS-A-nodosum_M_contig1162:46017..460951680866566.9423018-CDS-A-nodosum_M_contig1162:46017..46095Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1162 46018..46095 -
1680866566.9532022-CDS-A-nodosum_M_contig1162:46498..466841680866566.9532022-CDS-A-nodosum_M_contig1162:46498..46684Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1162 46499..46684 -
1680866566.9624383-CDS-A-nodosum_M_contig1162:49689..497711680866566.9624383-CDS-A-nodosum_M_contig1162:49689..49771Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1162 49690..49771 -
1680866566.9722579-CDS-A-nodosum_M_contig1162:50060..501851680866566.9722579-CDS-A-nodosum_M_contig1162:50060..50185Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1162 50061..50185 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1162.3.1

>prot_A-nodosum_M_contig1162.3.1 ID=prot_A-nodosum_M_contig1162.3.1|Name=mRNA_A-nodosum_M_contig1162.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=241bp
MNSGGWRKQTGRDGITPWLEKDVGWWTLADDYKENALEALASSPRYQRYA
NKRARARVAEGPDPYNTHEVCIKRPPEPLAENISSSKPPPKDAEAYFTPR
RTIKHFTDEYFAFQEARLESRGDLDEDGKSRLFHLHKREIPYSSLDSNTT
KYSLDPKGGQRHRLREAEANLRASHPPGRPSASEVARRALELRHAHREAL
QAVPSSCEAGAKLGEASRRWAFPICRESNRRRYSRLCGQD*
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mRNA from alignment at A-nodosum_M_contig1162:43349..50395-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1162.3.1 ID=mRNA_A-nodosum_M_contig1162.3.1|Name=mRNA_A-nodosum_M_contig1162.3.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=7047bp|location=Sequence derived from alignment at A-nodosum_M_contig1162:43349..50395- (Ascophyllum nodosum dioecious)
TACAAATCATGTTTATATCCGCAACCTGGATCCTCAGTCGAGCACCGCAC
TCGCGTAGATGCTCCTCACGGAATCCGACGCCAACGCGATGGGGATGTTA
TTAGCCTCTGCTGGCGGTGGTAGAATGTGTCAGTAGCACTAGTAATGATC
ACCTGAGGACGCGAACATAATTGCTTCGAAAGCGAAAAGTTGAGCTGCAG
TCGTTCGCTCATGAACTCGGGCGGGTGGCGCAAGCAAACTGGCCGAGACG
GTATCACGCCATGGCTCGAAAAAGATGTGGGCTGGTGGACACTTGCCGAT
GATTACAAGGAGAATGCTCTGGAAGCGCTCGCAAGGTATCCGAGTTGTAC
AGGAGGAAAAACAGAGAAAAATGTCGCGGATGTGTTCATTTTGATATCCA
AAGTATAACAGGTTTTGAGTTTATCTGCTTGTTATATTACGAGTAATTGC
GAGTCATCGATTCGTTCTCGTCCTATGGTATGTTTACTGAATGATTTCTA
CACGTATACTGGTATGTGTTAGAAACTCGGTTTAGACCTTGTTTTAAAGA
CATGTGGCGAGTAGACAACAATTTCCGGTTGCCGGGATTCGTCTTCATCT
CTGTCTGAAAATATTGTCGCACAGCTCTCCTAGGTACCAACGATATGCGA
ATAAACGGGCGAGGGCGCGAGTCGCTGAAGGTCCGGATCCATACAATACA
CACGAGGTTAGTATACTCAAAGCGAGGCCAAGTAGGACAGCGTCCTCCAG
TATCATTGGATCCAGTCCAACGGTCCCAAAATCCTGGTACAGGAGGACAC
TCAATCGGCGTAATGGTTTTCCGACTGAGTCCACTATCGTTCTAGACACC
CCTGCATTCTCCTGCCTTTCGCTGCATTAACATAGTCTATCTAGGTACTT
TTGGGGCATACGCGACGAGGAAAATATTTGCCCTTTGCGTAGCGGGTAGG
GTTGCCATTTCATGTCTCTTCAGATGAAACGAAGGAGGCATTCACACCTC
CCATAAAGACTCAGGGGTTCCAGAAACTAGCAATGGGTTCAGACTAATGT
GAAGTCTCTTGGTCGGGCAGGGTTAGCTACGGAAGAGGTAGTGCTGAGGT
CAGGGTTGGTGGATGGTTGCAGGTGGTCACAGGATTATTACAGTAGATGC
ATTGAACCTCGTTGTATTATTGTTTTCTAGTACCCCAACTCATGAGCATA
CTCTTGTAATATATACTCTCATAGACAAACGTACAACCAGTACAGTTGAT
AGAACAGGGTACAACCATAGAACTGAACCAGGAGGGTCCACAAGAGAACC
CACCAACTTCCTAATTTACACCGCATGTTGCTGTTCGTTGAGTAACCTAG
CTTTTCACGCTTTCATCCCCCTTTACTCACCGAGCCGCTGCATGCGAATC
ACGAAATATTTTAAGGAACCTTAGCCACTCTTGACTACTGGTGCTTCACA
TGTTCAATTGTTCATCAGAATCGTCAGAACATTGTTTTCCTACTATTTCA
GTTTCATGCAAAATATTCAATTTTCCTGAAACCTCTCTGCTCTGATGACA
TATACCTGTCGAATTTCTGGTTCGCGTACGACATAACTCATGACGTCAGA
ATATGACGTGCTCAACGTATAGATTTCAAGAAAAAATATGAACGTAATTC
TACGCTTCGAAAGCAATACTTCTTGAAACCGTTCGTCACGTCACGTCACG
ACAATCAAATAATTACCTATCTTCTTGGGTCAATTCTTTGTAGAGAGTTA
ACCTGTTGACTTCAATCAGACAACGCTTTCGCATCCAACGAAATCTTCTT
TTGCACAATGATTTATTATGTATGCACGTGGACTTTCCAACTTGATTATC
TGGTAGACAAGATACCATTCTGATGCCGTGATCAAACAGTTTGCTTGTCA
GAAACTATTTAAAAACATGTGGAGCTAAATATTGATTGGCGGGTGTCAGC
ACCACGCAAAAAAGTTACTCTCCTATGTCCACGTTCGAAGAAAATCTCGA
TACAACAGTATCATTTTGATCATGGACCGAGATGATCCAGGAGATAGCTC
AAAAACTGCTCCTCTGGTTTGCATGTCCCGACTGCTTCCATCTTCAGAGG
ATATTTTTTGTTGGCTTGAATACCTGGTACGATAACATGGGAAATTGCAA
CAAAGGCAAAACAAAACAAAAAAACACACACAGCAAAGCATACAGCAAAC
AGCATGGTCACTTAGGCAGAAATTAACGGATCATCATTCATTCGACCTCA
ATCGTACTGTTTGTTCTCGTCAGTCGACGCCGTCCCTTGCCGATGGTTGC
CAATCGCAGCCTCCTCGCGGGCGGCGACTCGTGCTGCTGTAACTGCATTC
GTGTTCTCCACGAAGTCTGCTTGAATGGGGTAGCCCCCCCCCCAATCTGT
GCTCTTCGCGGTTGTCCCTTTTGTTGCTGGAAAATCACCAGTTCGAAATG
GCGATCGGCGAGTTGTAATGGTTCCTTGTCGGTCTCGACCTTGGTTTGGG
AAATGAAATCTCCCCCCTCATCCGTGCTCGAGGTGCCGTTTACAATCACC
TCTTCCTTTTCCTCGGAGGCTCGTGATCGCTCGTGTGGGCTGTTTTCCCC
ATCCCGATGTCCCCTCATCACATCATCGGACTGCACTGTTCTTGGTGAGG
TTGTGAGCGCAGGAAGATTATAACGAGTCTTCAGAATCATTTTAAGAGTC
GGCGGCCAGACCCTGCTGTGCCTTGATCAATCTGCTATGCAAATTATCAA
TGTAATTCAGAGGTATAGGCAAAGGCCTCGCCGGGTACTCCTCCTGCGGG
CGATTGAGGGCCTCGCAGTTGTGACATATAACCATCCAGATAATTTCCTC
CTGACAAACCTCGAGTTCAAGCTGCATAAATGTCCTGATCCTTGCTTCAC
GCATCCATAGCATTTTGTAATACTCCTCAGAGTAAGATTGGGCATCTTCT
TCGGAAATATCGTCTCCGATCTTCTCTGTGAAGCAGTTCATTTTTACCGA
CTGTACTCTCTCACCAGTCATAAACGGAGTAATCTCACGTTCTGTGGGGT
GCTCTCTCTGGCTGCCTCCAATCGTCTGCTCAGCGTCCTCACGCGCTGGC
TCTGGTGCCGGTGCTTCGCACTCCCCTCGGTGCTTGTAGAAAGCCGGTAG
TACTTGCTGTCTCCTCAAGGCGCTCTCGTGATCGGTGTCTTCTCCAGCTC
CTCTGGATGAACTCTTCGTCTCCTGATGCTAAAAACCTCGAGTTTTTAGA
GCACTAAAAATACTCTCTACTCTCCGCACCGAAGCCTTTGTCAGAAACTC
CGATCGATTCGATCGATCAGTTCACTACTGTAGTGGGAAGTCTCTTGGCC
GGGCAGGGTTAGCTACGGAAGAGGTAGTGCTGAGGTCAGGGTTGGTGGAT
GGTGGCCGGTGGTCACAGGATTATTGCAGTAGATGCATTGAACCTCGTTG
TATTATTGTCTTCTAGTACCCGAACTCATGGACATACTCTTGTAACATAT
ACTCTCATAGACAAACGTACAACCAGTACAGTTGATAATACAGGTACAAT
CATAGAACTGAATCAAGAGGGTCCACGAAAGAACCCACCAACTTCCTAAT
TTACACCGCATGTTGCTGTTCGTTGAGTAACCTAGCTTTTCACGCTTTCA
CAGACTTCTTACGATAAGGAAGGCGAACTGGTGGTGGGGGATGTTGGGCT
CTGCTAAGCAGGTTTGTATCAAGAGGCCTCCCGAGCCACTCGCCGAGAAT
ATCTCCTCCTCAAAACCCCCACCGAAGGATGCAGAGGCGTATTTTACACC
GAGGCGTACCATCAAACACTTCACGGACGAATATTTCGCTTTCCAGGAAG
CGCGGCTCGAATCACGTGGGGATCTCGACGAAGATGGCAAGAGTAGGGTG
AGCTCCACCTGGCGTAAACTGGGGAGATACGAGTTGATCCCTTAGGGCCA
CAGACCCGATAAATAGCACTGCAGGAAGTGGAGTTGGTAGCCCTGCACGG
CCAACGGAAACATCGGTAGAAAGTGGTCCCCCCAACAATATGATCGGCTA
ATCTTGCGTTACAAACGGTGTCCCTCGTAAGAATTTAGTTGGAACATCAT
TATGAATTTGTTGTCTTTTTGGTTTTCAACATTTCCTGTAAAAACAAATT
TGATCTAAATATGCCCTGGGTGTACGTCGAGAAAGTCGTATCGGGCAATC
TTTCGAATCTTCCTGACCTTTTAGACTTCAGAGACATTCTCTTCGCCCAC
TTCTGAGACATTCCTTGTCGTTTCTTTCTTTTGTTTCTCTCGCGCGACAG
TTGTTCCACCTCCACAAGCGCGAGATACCGTACAGTTCACTCGATTCCAA
CACCACGAAATACTCCTTGGATCCGAAGGTGTGATGCGCCCAGAGTGTGA
GGGACAACGCATATCCACCTCAATATACTGAAAAGTACGGTCAGGATTCG
AAGTCCTTACAAACAACGACCCTGATCCCGGAGATAAAGATAATGTGTAT
TAATCTGTCTGTAGAGGGCGTACGCGATAGTGACGCCCATGAAACGAAAA
ATTTCTAACTTTCTTGTGACTTGTATCTGATCAGGGGGGTCAGCGCCATC
GTTTGCGCGAGGCTGAGGCGAACCTTCGCGCTAGTCACCCACCTGGTAGG
CCAAGTGCCTCAGAAGTCGCTCGGCGAGCTTTGGAGCTAAGACACGCACA
TCGAGAGGCTCTCCAGGCAGTGCCGAGTTCGTGTGAAGCTGGTAACAAGG
GTGGACCAGCATATATGGTGCCGTAACCTCTCGTGACGGGAGATTTCTAT
CGCCGTCCTCAATCAGCTTGGATGCCTGTGCCCTCTACCCAAACATGTTC
GACTACCGTTGATGACACCACGATGTTTTAGAGATATTTAGTGTACTTGG
AAATGTTTTCTAACCTCAAGCGATCTTATAATACCTCCACGCACTGTTAT
AATACATACATGTAAAACGGCGCACAAGATCACCCGGAAACGCAACAAAC
CACGCCTGTTAGACAGTCGATGAATATCCTTATTTCGTATTCACACTATG
AACTCGTCAGTTTTACGATCGATCTAAAGTCTCTTTAGAGCTATATTTAG
CTATATATTTGTCTGTACTATCTACTATAATCCTTGTATCTATTTACGAT
GTATCTATCATGTTATTTTCGGTAGGAGCCAAGTTAGGTGAAGCCTCAAG
GCGCTGGGCATTCCCCATTTGTCGCGAAAGCAACCGCCGACGGTACAGCC
GGCTGTGTGGCCAAGACTAATGTGACAGAGCGACCTCCAGCACAAAAAGA
ATTGGCCAGTCAAGTACTATGGCTGTTCACGTATCGTTATCCTTGAAATG
GTGCTGCAACGAACCAGAAGGTTACACACGTCCGATCCCAATAACCTGCG
ATACGTACGTCACCCTATAGATCTAACATAGGGGTGCATTTCTTCCTGCC
CACCGCGGAATGTTTCTTTCCGGCAACACAAACGTGGTGTTGACGAGGGC
GATGTAGAGTTGTAACTAATTAATGTCGATAGCGGGAGTGTGGGTTTTTA
TCACGCTTATGGTAAATGTTTTGCCCATCGCGGGTCGTCCGAGCTGTGCT
TAGTGTTCTGAGATTCGCGGTGCGATATCCCTCGTGCAGTAGTGTGATTC
TATTATATTATGTCCGGTGGGAATAGAGGTCGTGAAGAAGAGGCAGACTT
CACACCGCGCATGCGACTCAAGCGACGCGCACAAGACTATTTCTTGTCGG
GCAGTGGCATCTTGCCCGCGGAAACGTTTGTACTGAATTCTTGAGCTCAA
CCGTGCAATATTATAGCTTATTAATTTTCGATAACATGCGCGTTTTCCCC
TATCGGCGCTTGGCAGATCAGCTACACACACGACTATTGTAAGTGCCATG
TTCGGATTCACCGTCCACTCTCCCAAAAACCGCAATTGGGCTATAGCTTA
AAGTCATATGAGTCGATAATCCAGCTTCCCCTTAGTTCCCCCAGCACCCT
ACTTGAAGCTTGTCTATTACTTTTTCGTCCGAGCATTCACTTCCATAAGA
CGTTGCCCTCAACTTTCTCTGGTCGGGGAGTACTTATGCATGCACAATCG
CTCATACCGAACCATTCCAGACTTTCTTCAACCCACTTCTGCTTGGCAAG
TTATACTGTTATAAATTATAATTAGCGTTACATGTTATTTAAGATACCGG
GGCCAAGCATGCCGATCTTCCAGACCATGAAACGATTCGTGCTTGCTTGT
GGTTAGGGATTACTATTGATGTCAGGACCTCAAGCTCCCGTTATTTCTTC
TTTTCCACGCGGTTGTATCTAACGTAGGGGGGTCGACGATGCTAAGGAAA
AAATAAACGACAAGTAATCTGAGCAGGACTTTCAAAGTCACTGCAAAAAA
CCGCGTGTCGGGGGACTTCGATAGCAGTGTTTACATTCAGGACCTCGAGG
TGTCGTTTACGAGCAAGAATGGGTGCTCCCTAAAAAACGAGCTCGGTCAG
AAACCTAGAGTATTTTTCATTTTAGACACAGTAGTAGTAATACGATTCCA
CAGGTGCCTGAAGCAGACCGAGAGCGGTTTGGTGTACCATTTTATTGCGT
GTCTTCTTTACCGTCAGTTAATTAGCCTTACGCGCTCATATTTTAGTGAC
ATGGTGTCCAACCCGATAATATAACTCGAGTTTTAACTAGCGTTAATATT
GCAAGTTGCCATAAGCCTCTTGGGTATCTGCCATTCATTTTATCGCCTCG
CAGGAAAGTTTCTTTGTTTCCCAGGAGAACGGAGTTTATCTAAGTACCTT
CGGATTTTTGATGTTAAAGCTAGCTATCAATTTTCGCCTGCACCAATTTC
AGACGATGGCTTCAAGCTTGATATCTGTCTACTTTCTAGAATATTTTCAT
AGCCATCTGTACTCATACTATGCTCGTGTTTATTTCATTACGTCTATTTA
AGCTTGTTAGAGTGTTTCCATTTTCAAACGTGAACTTGAAATGGCAGAAA
AAGAGGTCCCTGGCCTCTTCCTTTCCTTAGAGATAGTCAAATCTATA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1162:43349..50395-

>mRNA_A-nodosum_M_contig1162.3.1 ID=mRNA_A-nodosum_M_contig1162.3.1|Name=mRNA_A-nodosum_M_contig1162.3.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=723bp|location=Sequence derived from alignment at A-nodosum_M_contig1162:43349..50395- (Ascophyllum nodosum dioecious)
ATGAACTCGGGCGGGTGGCGCAAGCAAACTGGCCGAGACGGTATCACGCC
ATGGCTCGAAAAAGATGTGGGCTGGTGGACACTTGCCGATGATTACAAGG
AGAATGCTCTGGAAGCGCTCGCAAGCTCTCCTAGGTACCAACGATATGCG
AATAAACGGGCGAGGGCGCGAGTCGCTGAAGGTCCGGATCCATACAATAC
ACACGAGGTTTGTATCAAGAGGCCTCCCGAGCCACTCGCCGAGAATATCT
CCTCCTCAAAACCCCCACCGAAGGATGCAGAGGCGTATTTTACACCGAGG
CGTACCATCAAACACTTCACGGACGAATATTTCGCTTTCCAGGAAGCGCG
GCTCGAATCACGTGGGGATCTCGACGAAGATGGCAAGAGTAGGTTGTTCC
ACCTCCACAAGCGCGAGATACCGTACAGTTCACTCGATTCCAACACCACG
AAATACTCCTTGGATCCGAAGGGGGGTCAGCGCCATCGTTTGCGCGAGGC
TGAGGCGAACCTTCGCGCTAGTCACCCACCTGGTAGGCCAAGTGCCTCAG
AAGTCGCTCGGCGAGCTTTGGAGCTAAGACACGCACATCGAGAGGCTCTC
CAGGCAGTGCCGAGTTCGTGTGAAGCTGGAGCCAAGTTAGGTGAAGCCTC
AAGGCGCTGGGCATTCCCCATTTGTCGCGAAAGCAACCGCCGACGGTACA
GCCGGCTGTGTGGCCAAGACTAA
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