mRNA_A-nodosum_M_contig1162.25.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1162.25.1
Unique NamemRNA_A-nodosum_M_contig1162.25.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig1162.25.1 vs. uniprot
Match: D7FRQ4_ECTSI (Protein YIPF n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRQ4_ECTSI)

HSP 1 Score: 208 bits (530), Expect = 2.500e-64
Identity = 96/111 (86.49%), Postives = 104/111 (93.69%), Query Frame = 2
Query:    2 PHFGYIYGFGMFGCVATAMVLNLLGEKPIDLWKTTSVLGYCLLPVIGLAAVGIVHSLKGADGHLLGLVSVVWCTFSATRLFEEYLDMRRQRYLIAYPVGLLYACFVLITVY 334
            PHFGYIYGFGMFGC+ATAMVLNL+GEKPIDLWKTTSVLGYCLLPVIGLAA+GIV  L+G  GH+LG V+V WCT SATRLFEEYL+MRRQRYL+AYPVGLLYACFVLITVY
Sbjct:  235 PHFGYIYGFGMFGCIATAMVLNLIGEKPIDLWKTTSVLGYCLLPVIGLAAMGIVTDLRGNLGHVLGFVAVAWCTISATRLFEEYLEMRRQRYLVAYPVGLLYACFVLITVY 345          
BLAST of mRNA_A-nodosum_M_contig1162.25.1 vs. uniprot
Match: A0A6H5JG11_9PHAE (Protein YIPF n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG11_9PHAE)

HSP 1 Score: 208 bits (530), Expect = 2.650e-64
Identity = 96/111 (86.49%), Postives = 104/111 (93.69%), Query Frame = 2
Query:    2 PHFGYIYGFGMFGCVATAMVLNLLGEKPIDLWKTTSVLGYCLLPVIGLAAVGIVHSLKGADGHLLGLVSVVWCTFSATRLFEEYLDMRRQRYLIAYPVGLLYACFVLITVY 334
            PHFGYIYGFGMFGC+ATAMVLNL+GEKPIDLWKTTSVLGYCLLPVIGLAA+GIV  L+G  GH+LG V+V WCT SATRLFEEYL+MRRQRYL+AYPVGLLYACFVLITVY
Sbjct:  237 PHFGYIYGFGMFGCIATAMVLNLIGEKPIDLWKTTSVLGYCLLPVIGLAAMGIVTDLRGNLGHVLGFVAVAWCTISATRLFEEYLEMRRQRYLVAYPVGLLYACFVLITVY 347          
BLAST of mRNA_A-nodosum_M_contig1162.25.1 vs. uniprot
Match: A0A835Z6H4_9STRA (Protein YIPF n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6H4_9STRA)

HSP 1 Score: 155 bits (391), Expect = 8.080e-45
Identity = 70/110 (63.64%), Postives = 87/110 (79.09%), Query Frame = 2
Query:    5 HFGYIYGFGMFGCVATAMVLNLLGEKPIDLWKTTSVLGYCLLPVIGLAAVGIVHSLKGADGHLLGLVSVVWCTFSATRLFEEYLDMRRQRYLIAYPVGLLYACFVLITVY 334
            HFGYIYGFG FGC A ++VLNL+G++PID W+TTSVLGYCLLPV+ L+AVGI   L G  G  L   +V W   +AT+LFE+YLDMR QR+LIAYP+GLLY CFVL+ ++
Sbjct:  116 HFGYIYGFGAFGCGALSLVLNLMGDRPIDAWRTTSVLGYCLLPVVLLSAVGIALDLSGRVGLALAGAAVAWSCTAATKLFEQYLDMRHQRWLIAYPIGLLYCCFVLMAIF 225          
BLAST of mRNA_A-nodosum_M_contig1162.25.1 vs. uniprot
Match: A0A7S0DM30_9EUKA (Protein YIPF n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DM30_9EUKA)

HSP 1 Score: 142 bits (359), Expect = 1.470e-40
Identity = 62/110 (56.36%), Postives = 84/110 (76.36%), Query Frame = 2
Query:    5 HFGYIYGFGMFGCVATAMVLNLLGEKPIDLWKTTSVLGYCLLPVIGLAAVGIVHSLKGADGHLLGLVSVVWCTFSATRLFEEYLDMRRQRYLIAYPVGLLYACFVLITVY 334
            HFGYIYGFG+ GC+   ++LNL+ ++ ID+++T S+LGYCLLP++ LAA  IV +LKG  G     V+++WCT +ATR  E  LDMR QRYL+AYP+ LLY+CF LITV+
Sbjct:   70 HFGYIYGFGLIGCLGMYIILNLMSDRSIDIYRTASILGYCLLPIVSLAAASIVFNLKGYIGFSTTTVTILWCTVAATRFVEATLDMRPQRYLVAYPLMLLYSCFALITVF 179          
BLAST of mRNA_A-nodosum_M_contig1162.25.1 vs. uniprot
Match: W7U1N9_9STRA (Protein YIPF n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7U1N9_9STRA)

HSP 1 Score: 144 bits (362), Expect = 4.240e-40
Identity = 67/110 (60.91%), Postives = 86/110 (78.18%), Query Frame = 2
Query:    5 HFGYIYGFGMFGCVATAMVLNLLGEKPIDLWKTTSVLGYCLLPVIGLAAVGIVHSLKGADGHLLGLVSVVWCTFSATRLFEEYLDMRRQRYLIAYPVGLLYACFVLITVY 334
            HFGYIYGFG+ GC+A  +VLNLL  K ID+W+  S+LGY LLPVIGLA +GI  SLKG  G  L  +++ W T+++TRLFE+ L+M +QRYL+AYPV L+YA FVLITV+
Sbjct:  145 HFGYIYGFGVSGCIAMYLVLNLLSPKDIDVWRVCSILGYGLLPVIGLAFLGIAVSLKGGVGQGLATLTIAWSTYASTRLFEKALNMSQQRYLVAYPVALVYAIFVLITVF 254          
BLAST of mRNA_A-nodosum_M_contig1162.25.1 vs. uniprot
Match: D8QC94_SCHCM (Protein YIP n=2 Tax=Schizophyllaceae TaxID=5332 RepID=D8QC94_SCHCM)

HSP 1 Score: 139 bits (350), Expect = 8.960e-39
Identity = 61/118 (51.69%), Postives = 90/118 (76.27%), Query Frame = 2
Query:    2 PHFGYIYGFGMFGCVATAMVLNLLGEKPIDLWKTTSVLGYCLLPVIGLAAVGIVHSLKGADGHLLGLVSVVWCTFSATRLFEEYLDMRRQRYLIAYPVGLLYACFVLITVY*GGGARQ 355
            P+FGYIYG G+FG ++  ++LNL+ E+PID ++ TSVLGYCLLP++G++AV ++ +L G  G+LL  +SV+WCT+SA+ +F   L M +QR L+AYPV LLY CF L++V+ G G  +
Sbjct:   96 PNFGYIYGVGLFGSMSLYILLNLMSERPIDAFRVTSVLGYCLLPMVGVSAVSVMVTLDGMFGYLLSFLSVLWCTYSASGIFVSVLQMSQQRVLVAYPVLLLYGCFALLSVFDGTGTAK 213          
BLAST of mRNA_A-nodosum_M_contig1162.25.1 vs. uniprot
Match: A0A7S2TR42_9EUKA (Protein YIPF n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TR42_9EUKA)

HSP 1 Score: 135 bits (340), Expect = 1.280e-37
Identity = 64/112 (57.14%), Postives = 83/112 (74.11%), Query Frame = 2
Query:    5 HFGYIYGFGMFGCVATAMVLNLLGE--KPIDLWKTTSVLGYCLLPVIGLAAVGIVHSLKGADGHLLGLVSVVWCTFSATRLFEEYLDMRRQRYLIAYPVGLLYACFVLITVY 334
            HFGYIYGFG+ GC+    +LNL+ +  K ID+++T S+LGYCLLP++GLAA+  V SLKG  G  L   +V+WCT +ATR  E  L MR QRYL+AYP+ LLY+CF LITV+
Sbjct:   73 HFGYIYGFGLIGCLGMYTILNLMSDPDKSIDIFRTISILGYCLLPIVGLAALSTVLSLKGYLGFGLTAFTVLWCTIAATRFVEATLGMRDQRYLVAYPLMLLYSCFALITVF 184          
BLAST of mRNA_A-nodosum_M_contig1162.25.1 vs. uniprot
Match: A0A5M3MUY7_CONPW (Protein YIP n=1 Tax=Coniophora puteana (strain RWD-64-598) TaxID=741705 RepID=A0A5M3MUY7_CONPW)

HSP 1 Score: 137 bits (344), Expect = 2.840e-37
Identity = 60/111 (54.05%), Postives = 83/111 (74.77%), Query Frame = 2
Query:    2 PHFGYIYGFGMFGCVATAMVLNLLGEKPIDLWKTTSVLGYCLLPVIGLAAVGIVHSLKGADGHLLGLVSVVWCTFSATRLFEEYLDMRRQRYLIAYPVGLLYACFVLITVY 334
            P FGYIYGFG+ G  +   +LNL+ EK ID ++T SVLGYCLLP++G+ A+ +V +L G  G+LL ++S++WCTFSA+ +F   L M  QR L+AYPVGLLY CF L++V+
Sbjct:  146 PQFGYIYGFGLLGSASIYTLLNLMSEKGIDAYRTVSVLGYCLLPMVGVGAISVVVTLDGMLGYLLSVLSIIWCTFSASGIFVAVLRMSDQRLLVAYPVGLLYGCFALLSVF 256          
BLAST of mRNA_A-nodosum_M_contig1162.25.1 vs. uniprot
Match: A0A8H5I1B3_9AGAR (Protein YIP n=3 Tax=Omphalotaceae TaxID=72117 RepID=A0A8H5I1B3_9AGAR)

HSP 1 Score: 136 bits (343), Expect = 3.110e-37
Identity = 58/113 (51.33%), Postives = 84/113 (74.34%), Query Frame = 2
Query:    2 PHFGYIYGFGMFGCVATAMVLNLLGEKPIDLWKTTSVLGYCLLPVIGLAAVGIVHSLKGADGHLLGLVSVVWCTFSATRLFEEYLDMRRQRYLIAYPVGLLYACFVLITVY*G 340
            P+FGYIYG G+FG ++   +LNL+ EK ID ++ TSVLGYCLLP++G+  + +  +L G  G++L L+S++WCT+SA+ +F   L M  QR L+AYPVGLLY CF L++V+ G
Sbjct:  142 PNFGYIYGVGLFGSISIYTLLNLMAEKAIDAYRVTSVLGYCLLPMVGVGGISVAMTLNGLFGYVLSLLSIIWCTYSASGIFVAVLRMSEQRLLVAYPVGLLYGCFALMSVFTG 254          
BLAST of mRNA_A-nodosum_M_contig1162.25.1 vs. uniprot
Match: A0A0G4FG04_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4FG04_VITBC)

HSP 1 Score: 135 bits (341), Expect = 3.420e-37
Identity = 62/111 (55.86%), Postives = 85/111 (76.58%), Query Frame = 2
Query:    5 HFGYIYGFGMFGCVATAMVLNLLGEKP-IDLWKTTSVLGYCLLPVIGLAAVGIVHSLKGADGHLLGLVSVVWCTFSATRLFEEYLDMRRQRYLIAYPVGLLYACFVLITVY 334
            HFGYIYG G+ GC+ T ++LNL+ +K  ID+++T S+LGY LLPV+GLAA+ I+ SL+G  G +L  + ++WCT +A+R FE  L M  QRYL+AYP+ LLY CFVLITV+
Sbjct:  122 HFGYIYGLGITGCLGTYLLLNLMSQKEAIDVFRTASILGYGLLPVVGLAAISIIFSLRGTLGTILSPLCIIWCTATASRFFETALLMHHQRYLVAYPICLLYTCFVLITVF 232          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1162.25.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRQ4_ECTSI2.500e-6486.49Protein YIPF n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
A0A6H5JG11_9PHAE2.650e-6486.49Protein YIPF n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A835Z6H4_9STRA8.080e-4563.64Protein YIPF n=1 Tax=Tribonema minus TaxID=303371 ... [more]
A0A7S0DM30_9EUKA1.470e-4056.36Protein YIPF n=1 Tax=Amorphochlora amoebiformis Ta... [more]
W7U1N9_9STRA4.240e-4060.91Protein YIPF n=3 Tax=Monodopsidaceae TaxID=425072 ... [more]
D8QC94_SCHCM8.960e-3951.69Protein YIP n=2 Tax=Schizophyllaceae TaxID=5332 Re... [more]
A0A7S2TR42_9EUKA1.280e-3757.14Protein YIPF n=1 Tax=Lotharella oceanica TaxID=641... [more]
A0A5M3MUY7_CONPW2.840e-3754.05Protein YIP n=1 Tax=Coniophora puteana (strain RWD... [more]
A0A8H5I1B3_9AGAR3.110e-3751.33Protein YIP n=3 Tax=Omphalotaceae TaxID=72117 RepI... [more]
A0A0G4FG04_VITBC3.420e-3755.86Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1162contigA-nodosum_M_contig1162:185568..186521 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FRQ4
Preferred nameYIPF4
PFAMsYip1
Model size432
Max annot lvl2759|Eukaryota
KEGG koko:K20363
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005794,GO:0005886,GO:0012505,GO:0016020,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0071944
Exons2
Evalue5.41e-55
EggNOG OGsCOG5080@1|root,KOG3103@2759|Eukaryota
Descriptionvesicle-mediated transport
Cds size306
COG categoryU
BRITEko00000,ko04131
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866568.3421032-UTR-A-nodosum_M_contig1162:185567..1856621680866568.3421032-UTR-A-nodosum_M_contig1162:185567..185662Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1162 185568..185662 -
1680866568.3717902-UTR-A-nodosum_M_contig1162:186490..1865211680866568.3717902-UTR-A-nodosum_M_contig1162:186490..186521Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1162 186491..186521 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866568.3548918-CDS-A-nodosum_M_contig1162:185662..1858911680866568.3548918-CDS-A-nodosum_M_contig1162:185662..185891Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1162 185663..185891 -
1680866568.3632689-CDS-A-nodosum_M_contig1162:186413..1864901680866568.3632689-CDS-A-nodosum_M_contig1162:186413..186490Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1162 186414..186490 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1162.25.1prot_A-nodosum_M_contig1162.25.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1162 185663..186490 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1162.25.1

>prot_A-nodosum_M_contig1162.25.1 ID=prot_A-nodosum_M_contig1162.25.1|Name=mRNA_A-nodosum_M_contig1162.25.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=102bp
MFGCVATAMVLNLLGEKPIDLWKTTSVLGYCLLPVIGLAAVGIVHSLKGA
DGHLLGLVSVVWCTFSATRLFEEYLDMRRQRYLIAYPVGLLYACFVLITV
Y*
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mRNA from alignment at A-nodosum_M_contig1162:185568..186521-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1162.25.1 ID=mRNA_A-nodosum_M_contig1162.25.1|Name=mRNA_A-nodosum_M_contig1162.25.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=954bp|location=Sequence derived from alignment at A-nodosum_M_contig1162:185568..186521- (Ascophyllum nodosum dioecious)
GCCACACTTCGGGTATATCTACGGATTCGGCATGTTTGGGTGCGTCGCGA CGGCCATGGTGCTAAACCTCCTAGGAGAAAAGCCAATCGATCTCTGGAAA ACCACAAGGTGGGTTCTCCAACCCCCCCCCCCCCCGACACATACACAATT CACAGGAAACTTACCAGAGCTTTCTTGCAACGCTGACTCTGGAACTCGAC CGGTTGAACAGTATTTTCCATTACACTTTTTTTGTTGGTGTGTTTGTTTT GTGTATAGCGGCGCTGTCAAGCTCTGGGTGGCACCACTCGAAAATTCTAA CCACCTACCAGTAAATTCTTGCTAGTTGTTTGTATACCGCAACTGTTGGT CGGAACCAGTTGATGCGCTGCCGCGATTTGGTTCTCCAAGCCCTTGCTCA GGCGTCAAAATGGGGGTTGTCTTGATGCATCCTCCCTCTCCCCCTCACAC ACACACACAAACACGCATGCTGATGTCACCCTCACCGGCGCACATAAGAG TTGTACGTGACCCGTGGCGTTGCCAATACTTTGCACGTCAGACCCGGGCA GCCGCGCAGGTAAAAACTCATCTCTCGCGCCCCCCACTCTCGCCCAAACC AAACCAAACCTCCTTGGCGCTCGCCGACAGCGTGCTGGGATACTGCCTCT TGCCGGTGATCGGCCTGGCGGCGGTGGGGATCGTTCACAGCCTCAAGGGC GCCGACGGGCACTTGCTAGGACTGGTGTCGGTGGTGTGGTGCACGTTTTC GGCGACGCGTCTATTCGAAGAGTACCTCGACATGCGAAGACAGCGATATC TCATCGCCTATCCCGTGGGGCTGCTTTACGCATGCTTCGTACTCATCACC GTTTACTAGGGGGGGGGGGCTAGACAGGCACGGTGGCGAGGTGATGGATT GTATAATGGAAGGGTTTCGAAGATAAGACGCGTATACGTATTTATGTATG TATG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1162:185568..186521-

>mRNA_A-nodosum_M_contig1162.25.1 ID=mRNA_A-nodosum_M_contig1162.25.1|Name=mRNA_A-nodosum_M_contig1162.25.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=306bp|location=Sequence derived from alignment at A-nodosum_M_contig1162:185568..186521- (Ascophyllum nodosum dioecious)
ATGTTTGGGTGCGTCGCGACGGCCATGGTGCTAAACCTCCTAGGAGAAAA
GCCAATCGATCTCTGGAAAACCACAAGCGTGCTGGGATACTGCCTCTTGC
CGGTGATCGGCCTGGCGGCGGTGGGGATCGTTCACAGCCTCAAGGGCGCC
GACGGGCACTTGCTAGGACTGGTGTCGGTGGTGTGGTGCACGTTTTCGGC
GACGCGTCTATTCGAAGAGTACCTCGACATGCGAAGACAGCGATATCTCA
TCGCCTATCCCGTGGGGCTGCTTTACGCATGCTTCGTACTCATCACCGTT
TACTAG
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