mRNA_A-nodosum_M_contig1162.25.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig1162.25.1 vs. uniprot
Match: D7FRQ4_ECTSI (Protein YIPF n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRQ4_ECTSI) HSP 1 Score: 208 bits (530), Expect = 2.500e-64 Identity = 96/111 (86.49%), Postives = 104/111 (93.69%), Query Frame = 2
Query: 2 PHFGYIYGFGMFGCVATAMVLNLLGEKPIDLWKTTSVLGYCLLPVIGLAAVGIVHSLKGADGHLLGLVSVVWCTFSATRLFEEYLDMRRQRYLIAYPVGLLYACFVLITVY 334
PHFGYIYGFGMFGC+ATAMVLNL+GEKPIDLWKTTSVLGYCLLPVIGLAA+GIV L+G GH+LG V+V WCT SATRLFEEYL+MRRQRYL+AYPVGLLYACFVLITVY
Sbjct: 235 PHFGYIYGFGMFGCIATAMVLNLIGEKPIDLWKTTSVLGYCLLPVIGLAAMGIVTDLRGNLGHVLGFVAVAWCTISATRLFEEYLEMRRQRYLVAYPVGLLYACFVLITVY 345
BLAST of mRNA_A-nodosum_M_contig1162.25.1 vs. uniprot
Match: A0A6H5JG11_9PHAE (Protein YIPF n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG11_9PHAE) HSP 1 Score: 208 bits (530), Expect = 2.650e-64 Identity = 96/111 (86.49%), Postives = 104/111 (93.69%), Query Frame = 2
Query: 2 PHFGYIYGFGMFGCVATAMVLNLLGEKPIDLWKTTSVLGYCLLPVIGLAAVGIVHSLKGADGHLLGLVSVVWCTFSATRLFEEYLDMRRQRYLIAYPVGLLYACFVLITVY 334
PHFGYIYGFGMFGC+ATAMVLNL+GEKPIDLWKTTSVLGYCLLPVIGLAA+GIV L+G GH+LG V+V WCT SATRLFEEYL+MRRQRYL+AYPVGLLYACFVLITVY
Sbjct: 237 PHFGYIYGFGMFGCIATAMVLNLIGEKPIDLWKTTSVLGYCLLPVIGLAAMGIVTDLRGNLGHVLGFVAVAWCTISATRLFEEYLEMRRQRYLVAYPVGLLYACFVLITVY 347
BLAST of mRNA_A-nodosum_M_contig1162.25.1 vs. uniprot
Match: A0A835Z6H4_9STRA (Protein YIPF n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6H4_9STRA) HSP 1 Score: 155 bits (391), Expect = 8.080e-45 Identity = 70/110 (63.64%), Postives = 87/110 (79.09%), Query Frame = 2
Query: 5 HFGYIYGFGMFGCVATAMVLNLLGEKPIDLWKTTSVLGYCLLPVIGLAAVGIVHSLKGADGHLLGLVSVVWCTFSATRLFEEYLDMRRQRYLIAYPVGLLYACFVLITVY 334
HFGYIYGFG FGC A ++VLNL+G++PID W+TTSVLGYCLLPV+ L+AVGI L G G L +V W +AT+LFE+YLDMR QR+LIAYP+GLLY CFVL+ ++
Sbjct: 116 HFGYIYGFGAFGCGALSLVLNLMGDRPIDAWRTTSVLGYCLLPVVLLSAVGIALDLSGRVGLALAGAAVAWSCTAATKLFEQYLDMRHQRWLIAYPIGLLYCCFVLMAIF 225
BLAST of mRNA_A-nodosum_M_contig1162.25.1 vs. uniprot
Match: A0A7S0DM30_9EUKA (Protein YIPF n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DM30_9EUKA) HSP 1 Score: 142 bits (359), Expect = 1.470e-40 Identity = 62/110 (56.36%), Postives = 84/110 (76.36%), Query Frame = 2
Query: 5 HFGYIYGFGMFGCVATAMVLNLLGEKPIDLWKTTSVLGYCLLPVIGLAAVGIVHSLKGADGHLLGLVSVVWCTFSATRLFEEYLDMRRQRYLIAYPVGLLYACFVLITVY 334
HFGYIYGFG+ GC+ ++LNL+ ++ ID+++T S+LGYCLLP++ LAA IV +LKG G V+++WCT +ATR E LDMR QRYL+AYP+ LLY+CF LITV+
Sbjct: 70 HFGYIYGFGLIGCLGMYIILNLMSDRSIDIYRTASILGYCLLPIVSLAAASIVFNLKGYIGFSTTTVTILWCTVAATRFVEATLDMRPQRYLVAYPLMLLYSCFALITVF 179
BLAST of mRNA_A-nodosum_M_contig1162.25.1 vs. uniprot
Match: W7U1N9_9STRA (Protein YIPF n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7U1N9_9STRA) HSP 1 Score: 144 bits (362), Expect = 4.240e-40 Identity = 67/110 (60.91%), Postives = 86/110 (78.18%), Query Frame = 2
Query: 5 HFGYIYGFGMFGCVATAMVLNLLGEKPIDLWKTTSVLGYCLLPVIGLAAVGIVHSLKGADGHLLGLVSVVWCTFSATRLFEEYLDMRRQRYLIAYPVGLLYACFVLITVY 334
HFGYIYGFG+ GC+A +VLNLL K ID+W+ S+LGY LLPVIGLA +GI SLKG G L +++ W T+++TRLFE+ L+M +QRYL+AYPV L+YA FVLITV+
Sbjct: 145 HFGYIYGFGVSGCIAMYLVLNLLSPKDIDVWRVCSILGYGLLPVIGLAFLGIAVSLKGGVGQGLATLTIAWSTYASTRLFEKALNMSQQRYLVAYPVALVYAIFVLITVF 254
BLAST of mRNA_A-nodosum_M_contig1162.25.1 vs. uniprot
Match: D8QC94_SCHCM (Protein YIP n=2 Tax=Schizophyllaceae TaxID=5332 RepID=D8QC94_SCHCM) HSP 1 Score: 139 bits (350), Expect = 8.960e-39 Identity = 61/118 (51.69%), Postives = 90/118 (76.27%), Query Frame = 2
Query: 2 PHFGYIYGFGMFGCVATAMVLNLLGEKPIDLWKTTSVLGYCLLPVIGLAAVGIVHSLKGADGHLLGLVSVVWCTFSATRLFEEYLDMRRQRYLIAYPVGLLYACFVLITVY*GGGARQ 355
P+FGYIYG G+FG ++ ++LNL+ E+PID ++ TSVLGYCLLP++G++AV ++ +L G G+LL +SV+WCT+SA+ +F L M +QR L+AYPV LLY CF L++V+ G G +
Sbjct: 96 PNFGYIYGVGLFGSMSLYILLNLMSERPIDAFRVTSVLGYCLLPMVGVSAVSVMVTLDGMFGYLLSFLSVLWCTYSASGIFVSVLQMSQQRVLVAYPVLLLYGCFALLSVFDGTGTAK 213
BLAST of mRNA_A-nodosum_M_contig1162.25.1 vs. uniprot
Match: A0A7S2TR42_9EUKA (Protein YIPF n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TR42_9EUKA) HSP 1 Score: 135 bits (340), Expect = 1.280e-37 Identity = 64/112 (57.14%), Postives = 83/112 (74.11%), Query Frame = 2
Query: 5 HFGYIYGFGMFGCVATAMVLNLLGE--KPIDLWKTTSVLGYCLLPVIGLAAVGIVHSLKGADGHLLGLVSVVWCTFSATRLFEEYLDMRRQRYLIAYPVGLLYACFVLITVY 334
HFGYIYGFG+ GC+ +LNL+ + K ID+++T S+LGYCLLP++GLAA+ V SLKG G L +V+WCT +ATR E L MR QRYL+AYP+ LLY+CF LITV+
Sbjct: 73 HFGYIYGFGLIGCLGMYTILNLMSDPDKSIDIFRTISILGYCLLPIVGLAALSTVLSLKGYLGFGLTAFTVLWCTIAATRFVEATLGMRDQRYLVAYPLMLLYSCFALITVF 184
BLAST of mRNA_A-nodosum_M_contig1162.25.1 vs. uniprot
Match: A0A5M3MUY7_CONPW (Protein YIP n=1 Tax=Coniophora puteana (strain RWD-64-598) TaxID=741705 RepID=A0A5M3MUY7_CONPW) HSP 1 Score: 137 bits (344), Expect = 2.840e-37 Identity = 60/111 (54.05%), Postives = 83/111 (74.77%), Query Frame = 2
Query: 2 PHFGYIYGFGMFGCVATAMVLNLLGEKPIDLWKTTSVLGYCLLPVIGLAAVGIVHSLKGADGHLLGLVSVVWCTFSATRLFEEYLDMRRQRYLIAYPVGLLYACFVLITVY 334
P FGYIYGFG+ G + +LNL+ EK ID ++T SVLGYCLLP++G+ A+ +V +L G G+LL ++S++WCTFSA+ +F L M QR L+AYPVGLLY CF L++V+
Sbjct: 146 PQFGYIYGFGLLGSASIYTLLNLMSEKGIDAYRTVSVLGYCLLPMVGVGAISVVVTLDGMLGYLLSVLSIIWCTFSASGIFVAVLRMSDQRLLVAYPVGLLYGCFALLSVF 256
BLAST of mRNA_A-nodosum_M_contig1162.25.1 vs. uniprot
Match: A0A8H5I1B3_9AGAR (Protein YIP n=3 Tax=Omphalotaceae TaxID=72117 RepID=A0A8H5I1B3_9AGAR) HSP 1 Score: 136 bits (343), Expect = 3.110e-37 Identity = 58/113 (51.33%), Postives = 84/113 (74.34%), Query Frame = 2
Query: 2 PHFGYIYGFGMFGCVATAMVLNLLGEKPIDLWKTTSVLGYCLLPVIGLAAVGIVHSLKGADGHLLGLVSVVWCTFSATRLFEEYLDMRRQRYLIAYPVGLLYACFVLITVY*G 340
P+FGYIYG G+FG ++ +LNL+ EK ID ++ TSVLGYCLLP++G+ + + +L G G++L L+S++WCT+SA+ +F L M QR L+AYPVGLLY CF L++V+ G
Sbjct: 142 PNFGYIYGVGLFGSISIYTLLNLMAEKAIDAYRVTSVLGYCLLPMVGVGGISVAMTLNGLFGYVLSLLSIIWCTYSASGIFVAVLRMSEQRLLVAYPVGLLYGCFALMSVFTG 254
BLAST of mRNA_A-nodosum_M_contig1162.25.1 vs. uniprot
Match: A0A0G4FG04_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4FG04_VITBC) HSP 1 Score: 135 bits (341), Expect = 3.420e-37 Identity = 62/111 (55.86%), Postives = 85/111 (76.58%), Query Frame = 2
Query: 5 HFGYIYGFGMFGCVATAMVLNLLGEKP-IDLWKTTSVLGYCLLPVIGLAAVGIVHSLKGADGHLLGLVSVVWCTFSATRLFEEYLDMRRQRYLIAYPVGLLYACFVLITVY 334
HFGYIYG G+ GC+ T ++LNL+ +K ID+++T S+LGY LLPV+GLAA+ I+ SL+G G +L + ++WCT +A+R FE L M QRYL+AYP+ LLY CFVLITV+
Sbjct: 122 HFGYIYGLGITGCLGTYLLLNLMSQKEAIDVFRTASILGYGLLPVVGLAAISIIFSLRGTLGTILSPLCIIWCTATASRFFETALLMHHQRYLVAYPICLLYTCFVLITVF 232 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1162.25.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1162.25.1 >prot_A-nodosum_M_contig1162.25.1 ID=prot_A-nodosum_M_contig1162.25.1|Name=mRNA_A-nodosum_M_contig1162.25.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=102bp MFGCVATAMVLNLLGEKPIDLWKTTSVLGYCLLPVIGLAAVGIVHSLKGAback to top mRNA from alignment at A-nodosum_M_contig1162:185568..186521- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig1162.25.1 ID=mRNA_A-nodosum_M_contig1162.25.1|Name=mRNA_A-nodosum_M_contig1162.25.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=954bp|location=Sequence derived from alignment at A-nodosum_M_contig1162:185568..186521- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1162:185568..186521- >mRNA_A-nodosum_M_contig1162.25.1 ID=mRNA_A-nodosum_M_contig1162.25.1|Name=mRNA_A-nodosum_M_contig1162.25.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=306bp|location=Sequence derived from alignment at A-nodosum_M_contig1162:185568..186521- (Ascophyllum nodosum dioecious)back to top |