mRNA_A-nodosum_M_contig1162.17.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig1162.17.1 vs. uniprot
Match: A0A6H5JQJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQJ8_9PHAE) HSP 1 Score: 318 bits (814), Expect = 3.190e-92 Identity = 253/634 (39.91%), Postives = 305/634 (48.11%), Query Frame = 3
Query: 372 GSWMIASSRRPAAVSSRPAPTQISSASTK-------LERDVHQLEAEGKLEDVMSKLLKSHSEGSSDADILAHELAQRHPE-ALRARGCPVH---QGKVVATTFSATESSDPALPPSQTRSSLPSGRLASAQRPGHAAPVSAADSNIPLAVDARAFELRDWTTQQGQERGELTPAAADLSPDNNNVSRAELLAGQSLESETDEVEETNDDSDGFQNSTGAESFTPDNPVCPVPAATATG----------GGAEGSET---PWDRGWQASDDFEPPSEGKLPGDA-------------------------------------EVGDM-ASEL--RNFTIAQLNPFDGGIEKEVERGGVVKAGKTRPIYIALRGWVYDASAGRHLYGPSGEYSELAGHDVSKRVARGLRGQGSSREAGKGDLDDLSLEGLSRFEEMTLAGWEDIFVARSYPVVGRVVAIVTPTPPRLFSREELQMFDGRRV--------TSELRNGF----------------------------SLP--------------RGYAVPPIYIGVMDKVFDVSYGGSEFYSEGGAYECLAGRDASRVLAKMSMSPEDVGGLLDYSRLTAKELKNLVDWVQRLEK--KGYPEVGRLEI 1925
GS + +SR P + SSR + +S ST LE+ +LEA G L+ M LL SH +GSS A LAHEL+QRHP AL CP+ + V A S DP + A + APV AA + LA + A + D T +E + + + + R L+G+S S T P A TATG GG E + T PW+RGWQ + F+PP D +VGD A++L RNFT+ QLN FDGG RGG +AGK RPIYIAL+G VYDASAGRHLYGP GEYSE AGHD+S+RVA G S + LDDLSLE L RFE+MTL GWED F AR YP +GRVVA P PPRLFSR EL+ FDGR +E R G SLP YA PIY+GV DKVFDVS+GGSEFY EGG YECLAGRDASRVLAKMSM+ ED+ G+LDYS LT +E KNL DWV +L + KGYP VG +++
Sbjct: 36 GSSIRKASRAPGSSSSRRTGSTGTSTSTHGCSTAAALEKRAEELEAAGDLDGAMEALLASHDQGSSRAVTLAHELSQRHPVGALGGNRCPLSIRSPRRKVGGGVEAGASPDPEASSAXXXXXXXXXXXAVSV----VAPVCAA-ALTSLASEVLADDNNDGVTSVPEEHCKRSLPSGE-------ERRHVTLSGESA------------------------SATAAGPASQSAATTATGALEPGKRIDHGGGEPTTTTLLPWERGWQGREGFKPPPSSSALADTGSSASRDAAGTAAAFGAGLSPSSSSFAETGVQSDDALDVGDAEATKLARRNFTVRQLNAFDGGCSAPRMRGGEARAGKQRPIYIALKGEVYDASAGRHLYGPGGEYSEFAGHDISRRVAHGAS---HSDRSSNTLLDDLSLENLGRFEQMTLRGWEDTFRARGYPSLGRVVA---PPPPRLFSRAELRAFDGRSAHVAGPEYEETERRAGAGREEREVGGGEPGEQVAALGRHEEQPAESLPPEQEAKATANAVCFSNYAARPIYMGVKDKVFDVSFGGSEFYLEGGPYECLAGRDASRVLAKMSMASEDIEGVLDYSCLTDREEKNLADWVAKLGEGGKGYPVVGWIDL 627
BLAST of mRNA_A-nodosum_M_contig1162.17.1 vs. uniprot
Match: D7FRN9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRN9_ECTSI) HSP 1 Score: 281 bits (718), Expect = 1.690e-78 Identity = 169/323 (52.32%), Postives = 190/323 (58.82%), Query Frame = 3
Query: 1143 GDAEVGDMASELRNFTIAQLNPFDGGIEKEVERGGVVKAGKTRPIYIALRGWVYDASAGRHLYGPSGEYSELAGHDVSKRVARGL-RGQGSSREAGKGDLDDLSLEGLSRFEEMTLAGWEDIFVARSYPVVGRVVAIVTPTPPRLFSREELQMFDGRRVT------------------------------------SELRNGFSLP--------------RGYAVPPIYIGVMDKVFDVSYGGSEFYSEGGAYECLAGRDASRVLAKMSMSPEDVGGLLDYSRLTAKELKNLVDWVQRLEKKGYPEVGRLEI------CGLSF 1940
GDAE + RNFT+ QLN FDGG RGG +A K RPIYIAL+G VYDASAGRHLYGP GEYSE AGHD+S+RVA G R SS LDDLSLEGL RFE+MTL GWED F AR YP +GRVVA P PPRLFSR EL+ FDGR E + SLP YA PIY+GV DKVFDVS+GGSEFY EGG YECLAGRDASRVLAKMSM+ ED+ G+LDYS LT +E KNL DWV++L + G + R CG+SF
Sbjct: 24 GDAEATKLVR--RNFTVRQLNAFDGGCSAPRMRGGEARAVKQRPIYIALKGEVYDASAGRHLYGPGGEYSEFAGHDISRRVAHGASRSDRSSSTL----LDDLSLEGLGRFEQMTLRGWEDTFRARGYPSLGRVVA---PPPPRLFSRAELRAFDGRPADVAASEHGETERGAGAGGGEREVGGGEPGEQAAVLARQEEQPAESLPPEQEAKATANAVYFSNYAAQPIYMGVKDKVFDVSFGGSEFYLEGGPYECLAGRDASRVLAKMSMASEDIEGVLDYSCLTDREEKNLADWVEKLGEGGKGYLPRHPTDRPGVRCGISF 337
BLAST of mRNA_A-nodosum_M_contig1162.17.1 vs. uniprot
Match: A0A7S1ZS28_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZS28_TRICV) HSP 1 Score: 184 bits (468), Expect = 4.370e-49 Identity = 108/256 (42.19%), Postives = 146/256 (57.03%), Query Frame = 3
Query: 1161 DMASELRNFTIAQLNPFDGGIEKEVERGGVVKAGKTRPIYIALRGWVYDASAGRHLYGPSGEYSELAGHDVSKRVARGLRGQGSSREAGKGDLDDLSLEGLSRFEEMTLAGW-EDIFVARSYPVVGRVV-AIVTPTPPRLFSREELQMFDGRRVTSELRNGFSLPRGYAVPPIYIGVMDKVFDVSYGGSEFYSEGGAYECLAGRDASRVLAKMSMSPEDVGGLLDYSRLTAKELKNLVDWVQRLE-KKGYPEVGRL 1919
D L NFT QL FDGG + ++ G +P+Y++++G VYDAS GRHLYGP G + AG + +ARG Q DLD++S + LS E+ L GW E + + YPV+GR++ P+ R+ S+EEL +DG+ +P GYA PIY+ KV+D+S+GG FY +GGAY C AG+DASR LAKMS+ P D S L+ KE+K L DWV+ E +K YP VGRL
Sbjct: 11 DEPDPLNNFTSVQLLHFDGGEDSVGKKKG------EKPVYLSVKGVVYDASKGRHLYGPGGPFEVYAGRECGAALARGSLDQS--------DLDNISCDDLSMNEQTELEGWVERLKSSLCYPVLGRLIPGDALPSEDRVVSKEELAQYDGKIQ--------DIPEGYAAAPIYLAAKGKVYDMSFGGVSFYGKGGAYNCFAGKDASRALAKMSLDPADTENT-STSDLSEKEIKVLNDWVKTFEERKKYPCVGRL 243
BLAST of mRNA_A-nodosum_M_contig1162.17.1 vs. uniprot
Match: A0A7S0CLZ8_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CLZ8_9STRA) HSP 1 Score: 173 bits (439), Expect = 1.290e-44 Identity = 111/269 (41.26%), Postives = 149/269 (55.39%), Query Frame = 3
Query: 1125 SEGKLPGDAEVGDMASELRNFTIAQLNPFDGGIEKEVERGGVVKAGKTRPIYIALRGWVYDASAGRHLYGPSGEYSELAGHDVSKRVARGLRGQGSSREAGKGDLDDLS-LEGLSRFEEMTLAGWEDIFVA-RSYPVVGRVVAIVTPTPP-RLFSREELQMFDGRRVTSELRNGFSLPRGYAVPPIYIGVMDKVFDVSYGGSEFYSEGGAYECLAGRDASRVLAKMSMSPEDVGGLLDYSRLTAKELKNLVDWVQRL-EKKGYPEVGRL 1919
S+G D D RN+T AQL F+G I+K + T+ +Y++L G V+D + G++ YGP G Y AGH+ A+ LDD+ E L+ E+ L GW + F R+YPV G ++ +P R+ S+EE+ DG NG ++P GYAV PIYIGV ++VFDVS+GG EFY +GGAYE AG+DASR LAKMS P D D S L+ KELK L DWV+ E+KGYP VG++
Sbjct: 45 SKGSKSNDETEDDGPEPARNYTEAQLLKFNGSIDK------TGRFEVTQQVYLSLNGTVFDVTEGKNFYGPGGPYELFAGHECGVAFAK--------MSFDNDHLDDMDGCEKLTNSEKHELIGWMEKFTYYRAYPVKGSLIPNNKLSPSDRILSKEEIAKHDG--------NG-TVPEGYAVAPIYIGVGERVFDVSFGGVEFYGKGGAYERFAGKDASRALAKMSFDPADTANT-DTSDLSEKELKVLNDWVKTFDERKGYPVVGKI 289
BLAST of mRNA_A-nodosum_M_contig1162.17.1 vs. uniprot
Match: A0A7S4NEZ3_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NEZ3_9STRA) HSP 1 Score: 159 bits (403), Expect = 6.450e-40 Identity = 107/271 (39.48%), Postives = 140/271 (51.66%), Query Frame = 3
Query: 1131 GKLPGDAEVGDMASEL----RNFTIAQLNPFDGGIEKEVERGGVVKAGKTRPIYIALRGWVYDASAGRHLYGPSGEYSELAGHDVSKRVARGLRGQGSSREAGKGDLDDLSLEGLSRFEEMTLAGWEDIF-VARSYPVVGRVVAIVT-PTPPRLFSREELQMFDGRRVTSELRNGFSLPRGYAVPPIYIGVMDKVFDVSYGGSEFYSEGGAYECLAGRDASRVLAKMSMSPEDVGGLLDYSRLTAKELKNLVDWVQRL-EKKGYPEVGRLE 1922
G D EV + A E RNFT QL FDG ++ K G+ +P+Y+A++G V+D S+GR YGP G Y +GH+ +A+ + +DD S E L+ E+ L GW + F RSYPV GR+V + P + S EEL DG +P GYA PIY+ KVFDVS+GG FY + GAY AG DASR LAKMS P D+ + LT KE K L DW++ E+K YP VG L+
Sbjct: 36 GSGRNDVEVEEEAVEEEEPPRNFTAMQLKHFDGTKDE--------KTGEDKPVYLAVKGIVFDVSSGRDFYGPGGAYEMFSGHECGVALAK--------MSFDEKYIDDFSWESLNFGEKTELDGWIEKFQYYRSYPVKGRLVPEKSIPPSDKTVSTEELAKNDG---------SMEIPEGYAAAPIYVAAGGKVFDVSFGGVTFYGKDGAYSSFAGVDASRALAKMSFDPSDIENPT-INDLTEKEKKCLDDWIKTFGERKQYPVVGILK 280
BLAST of mRNA_A-nodosum_M_contig1162.17.1 vs. uniprot
Match: A0A7S3Y4U5_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y4U5_HETAK) HSP 1 Score: 158 bits (400), Expect = 1.670e-39 Identity = 106/247 (42.91%), Postives = 130/247 (52.63%), Query Frame = 3
Query: 1179 RNFTIAQLNPFDGGIEKEVERGGVVKAGKTRPIYIALRGWVYDASAGRHLYGPSGEYSELAGHDVSKRVARGLRGQGSSREAGKGDLDDLSLEGLSRFEEMTLAGWEDIFVA-RSYPVVGRVVAIVTPTPPRLFSREELQMFDGRRVTSELRNGFSLPRGYAVPPIYIGVMDKVFDVSYGGSEFYSEGGAYECLAGRDASRVLAKMSMSPEDVGGLLDYSRLTAKELKNLVDWVQRLE-KKGYPEVG 1913
RNFT QL +DG E E PIY+ALRG V+D S+ YG G Y+ AGHD ++ +A+ S E + DL+ S EG S E +L GW F + YP+VGRVV P PR SREELQ E+R + P GYA PI I V V+DVS+GG FY EG AY AG+DASR LAKMS EDV + L+ KELK L DW + +K YP +G
Sbjct: 65 RNFTFEQLKKYDGSEEDE-------------PIYVALRGVVFDVSSAPTHYGKDGAYNLFAGHDATRNLAK------MSFE--EDDLNKPSTEGFSVSEIDSLDGWYTTFKEYKQYPIVGRVVE---PPKPRKISREELQ---------EMRGKQTCPEGYATAPICISVKGNVYDVSFGGVTFYMEGAAYHLFAGKDASRALAKMSFKDEDVNST-ELKDLSEKELKVLDDWENTFKNRKKYPIIG 277
BLAST of mRNA_A-nodosum_M_contig1162.17.1 vs. uniprot
Match: A0A836C9I0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9I0_9STRA) HSP 1 Score: 154 bits (388), Expect = 7.180e-38 Identity = 101/252 (40.08%), Postives = 128/252 (50.79%), Query Frame = 3
Query: 1176 LRNFTIAQLNPFDGGIEKEVERGGVVKAGKTRPIYIALRGWVYDASAGRHLYGPSGEYSELAGHDVSKRVARGLRGQGSSREAGKGDLDDLSLEGLSRFEEMTLAGWEDIFVA-RSYPVVGRVVAIVTPTPPRLFSREELQMFDGRRVTSELRNGFSLPRGYAVPPIYIGVMDKVFDVSYGGSEFYSEGGAYECLAGRDASRVLAKMSMSPEDVGGLLDYSRLTAKELKNLVDWVQRLEKKGYPEVGRLEIC 1928
LRNFT+ QL F G K + V PIY+ALRG V+D S RH YG G Y AGHD S +AR S +A DL+ ++ E LS E TL GW F + YP+VGRVV P P ++++E+L G +P G A P+ + V KVFDVSYGG+ Y +G Y GRDASR LAKMS E++ + L+ E+ + DW R EKKGY VG C
Sbjct: 60 LRNFTLEQLKAFTGVNAKGEDDEDV-------PIYVALRGEVFDVSQARHAYGKEGNYHIFAGHDASVSLAR------HSLDAS--DLNKMTWEELSHGERDTLDGWIQQFRDYKGYPMVGRVVTAPLPDPLPVYTKEQLAAGTGEGP---------IPDGAAAAPMLVAVAGKVFDVSYGGAPHYGKGCPYNLFVGRDASRALAKMSFDAENLDNP-SIADLSLAEVGVMNDWAARFEKKGYRVVGTYPTC 286
BLAST of mRNA_A-nodosum_M_contig1162.17.1 vs. uniprot
Match: A0A6H5JR28_9PHAE (Cytochrome b5 heme-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR28_9PHAE) HSP 1 Score: 136 bits (342), Expect = 1.040e-31 Identity = 75/123 (60.98%), Postives = 88/123 (71.54%), Query Frame = 3
Query: 1176 LRNFTIAQLNPFDGGIEKEVERGGVVKAGKTRPIYIALRGWVYDASAGRHLYGPSGEYSELAGHDVSKRVARGLRGQGSSREAGKGDLDDLSLEGLSRFEEMTLAGWEDIFVARSYPVVGRVV 1544
LR+FTIA+LN FDGG E + R K PI+I+L G VYDAS GR +YGPSGE + AGHDVS+ VARGL +S++ GK DLDDLSL GL+R E MTLAGWE+ F A YPVVGRVV
Sbjct: 177 LRDFTIAELNTFDGG-ESPLSR-------KPHPIFISLGGTVYDASNGRGIYGPSGELAAFAGHDVSRWVARGLV---ASKDDGKSDLDDLSLTGLNRIERMTLAGWEERFKACGYPVVGRVV 288
BLAST of mRNA_A-nodosum_M_contig1162.17.1 vs. uniprot
Match: A0A7S3USF5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3USF5_HETAK) HSP 1 Score: 136 bits (342), Expect = 5.020e-31 Identity = 92/252 (36.51%), Postives = 122/252 (48.41%), Query Frame = 3
Query: 1179 RNFTIAQLNPFDGGIEKEVERGGVVKAGKTRPIYIALRGWVYDASAGRHLYGPSGEYSELAGHDVSK-----RVARGLRGQGSSREAGKGDLDDLSLEGLSRFEEMTLAGWEDIFVA-RSYPVVGRVVAIVTPTPPRLFSREELQMFDGRRVTSELRNGFSLPRGYAVPPIYIGVMDKVFDVSYGGSEFYSEGGAYECLAGRDASRVLAKMSMSPEDVGGLLDYSRLTAKELKNLVDWVQRL-EKKGYPEVG 1913
RNFT QL F G PI IA+ G V+D S R +GP G+YS LAG D+S R+ GL G D + L++ E L W ++ + +P+ GR+VA P P R F++ EL + GR+ P GYA PI +GV +V+DVS+GG +FY EG Y AGRDASR LA++S + D+G + L KE L DW + KK YP VG
Sbjct: 139 RNFTHQQLERFTGE--------------DNSPILIAINGDVFDVSRSRRFFGPGGQYSMLAGRDISVCLAKLRLEEGLLGA------------DPATAALTKKERRDLRSWHKVYGGYKEFPLAGRLVA---PPPARAFAKAELMSYTGRQPA---------PAGYARAPILVGVAGRVYDVSFGGWQFYGEGAPYHLFAGRDASRALARLSFAAADLGSP-ELGDLGEKERGVLADWERTFARKKRYPVVG 351
BLAST of mRNA_A-nodosum_M_contig1162.17.1 vs. uniprot
Match: A0A7S2R2U9_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R2U9_9STRA) HSP 1 Score: 133 bits (334), Expect = 2.370e-30 Identity = 89/266 (33.46%), Postives = 132/266 (49.62%), Query Frame = 3
Query: 1179 RNFTIAQLNPFDGGIEKEVERGGVV--KAGKTRPIYIALRGWVYDASAGRHLYGPSGEYSELAGHDVSKRVARGLRGQGSSREAGKGDLDDLSLEGLSRFEEMTLAGWEDIFV-ARSYPVVGRVVAIVT-PTPPRLFSREELQMFDGR--------------RVTSELRNGFSLPRGYAVPPIYIGVMDKVFDVSYGGSEFYSEGGAYECLAGRDASRVLAKMSMSPEDVGGLLDYSRLTAKELKNLVDWVQRLE-KKGYPEVGRL 1919
RNFT QL +DG +++ + + V+ ++ +P+Y++L+G V+D S + YGP G Y AG + +A+ S + + D SL L+ E LA W F R YP++GR+V+ P P RL ++++L DG +P GY PIY+GV VFDVS+GG E+Y +G Y AG+D SR LAKMS+ ++ + L KE K L DW + K+ YP VG+L
Sbjct: 59 RNFTSEQLAYYDGTVDETIPKRKVLVKESDNKKPVYLSLKGIVFDVSEATNFYGPGGPYESFAGRECGMALAKRNMYDASLLD----EAVDSSL--LNEKERTQLAEWIHKFQKVRCYPIMGRLVSSSQLPDPDRLLTKDDLLANDGTIHXXXXXXXXXXXXXXXXXXXGDVVIPEGYGTVPIYLGVDGTVFDVSFGGLEYYGKGCPYHPFAGKDVSRALAKMSLDVAEIDNCAVHD-LNEKECKTLKDWKTSFQDKRKYPIVGQL 317 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1162.17.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1162.17.1 >prot_A-nodosum_M_contig1162.17.1 ID=prot_A-nodosum_M_contig1162.17.1|Name=mRNA_A-nodosum_M_contig1162.17.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=582bp MLWRSCWSTAVRATYVIVLRSVWTKIENLMCSATEIAAFLRQVQILVAIGback to top mRNA from alignment at A-nodosum_M_contig1162:131351..136583+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig1162.17.1 ID=mRNA_A-nodosum_M_contig1162.17.1|Name=mRNA_A-nodosum_M_contig1162.17.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=5233bp|location=Sequence derived from alignment at A-nodosum_M_contig1162:131351..136583+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1162:131351..136583+ >mRNA_A-nodosum_M_contig1162.17.1 ID=mRNA_A-nodosum_M_contig1162.17.1|Name=mRNA_A-nodosum_M_contig1162.17.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1746bp|location=Sequence derived from alignment at A-nodosum_M_contig1162:131351..136583+ (Ascophyllum nodosum dioecious)back to top |