mRNA_A-nodosum_M_contig1162.14.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig1162.14.1 vs. uniprot
Match: A0A6H5JR22_9PHAE (Lipoyl-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR22_9PHAE) HSP 1 Score: 156 bits (395), Expect = 6.720e-41 Identity = 78/128 (60.94%), Postives = 93/128 (72.66%), Query Frame = 3
Query: 633 LYLPMPKLSPSMTEGTITAWHKAEGDEVDEYDTMMEITTDSLYAAGDGG-EGGPVKMVIEVVEAGFVGKLLAAQGDTVKVGRPVMVMCEEEENVDTLRAAPTPPIDLYGDDASKFRMATYQGYLQEST 1013
LYLPMPKLSPSMT T+T W KAEGDE++EYD ++E++TDSLYA GD EGG V MV+E+ E GFVGKL A+GDTV+VG+ VM MCEE ENV L +P +D YG R+ATYQGYL T
Sbjct: 59 LYLPMPKLSPSMTRATVTKWLKAEGDEINEYDAILELSTDSLYALGDAPVEGGTVDMVVELAECGFVGKLFVAEGDTVEVGQAVMAMCEEVENVRALSGVTSPGVDCYGGAGEGLRIATYQGYLNHKT 186
BLAST of mRNA_A-nodosum_M_contig1162.14.1 vs. uniprot
Match: D7FRP6_ECTSI (Pyruvate dehydrogenase E1 component subunit beta n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRP6_ECTSI) HSP 1 Score: 151 bits (382), Expect = 6.550e-40 Identity = 75/125 (60.00%), Postives = 91/125 (72.80%), Query Frame = 3
Query: 645 MPKLSPSMTEGTITAWHKAEGDEVDEYDTMMEITTDSLYAAGDGG-EGGPVKMVIEVVEAGFVGKLLAAQGDTVKVGRPVMVMCEEEENVDTLRAAPTPPIDLYGDDASKFRMATYQGYLQESTQ 1016
MPKLSPSMT T+T W KAEGDE++EYD ++E++TDSLYA GD EG V MV+E+ E GFVGKL A+GDTV+VG+ VM MCEEEENV L A +P +D Y FR+ATYQGYL T+
Sbjct: 1 MPKLSPSMTRATVTKWLKAEGDEINEYDAILELSTDSLYAPGDAPVEGSTVDMVVELAECGFVGKLFVAEGDTVEVGQAVMAMCEEEENVRALSGATSPSVDCYSGAGEGFRIATYQGYLNHKTE 125
BLAST of mRNA_A-nodosum_M_contig1162.14.1 vs. uniprot
Match: A0A836CE97_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE97_9STRA) HSP 1 Score: 106 bits (264), Expect = 5.170e-23 Identity = 57/128 (44.53%), Postives = 81/128 (63.28%), Query Frame = 3
Query: 555 VGCRRKPAHGNIWGSRRASSA--MPDDALYLPMPKLSPSMTEGTITAWHKAEGDEVDEYDTMMEITTDSLYAAG--DGGEGGPVKMVIEVVEAGFVGKLLAAQGDTVKVGRPVMVMCEEEENVDTLRA 926
GC+ A + R +S+A MP D L+LPMP+LSPSM GTI W + GDE EY+ + I TD+L A G G MV+E++EAGF+ KLL +G+TV+VG P+ ++CEEE++V L++
Sbjct: 7 AGCQAVRAAKQVCALRASSTAKGMPHDTLWLPMPRLSPSMKTGTIKKWLLSPGDEFGEYEAALTIDTDTLVAEGLKTPESSGSTSMVVELLEAGFMAKLLRKEGETVRVGEPIALLCEEEDSVSALQS 134
BLAST of mRNA_A-nodosum_M_contig1162.14.1 vs. uniprot
Match: A0A8J9WR07_9CHLO (Probable dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial at N-terminal half n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9WR07_9CHLO) HSP 1 Score: 90.1 bits (222), Expect = 4.480e-17 Identity = 56/133 (42.11%), Postives = 78/133 (58.65%), Query Frame = 3
Query: 612 SAMPDDALYLPMPKLSPSMTEGTITAWHKAEGDEVDEYDTMMEITTDSLYAAGD--GGEGGPVKMVIEVVEAGFVGKLLAAQGDTVKVGRPVMVMCEEEENVDTLRAAPTPPIDLYGDDASKFRMATYQGYLQ 1004
SA + + +PMPKLSPSMTEGTI+ W KA GDE+ EYD +ME+ T L A G G V +++E E G + L QG VKVG PV +M E+ +++ L PP ++Y + S+ R +Q YL+
Sbjct: 2 SADSSNVIVVPMPKLSPSMTEGTISRWLKAPGDEIVEYDIIMEVDTQELTEAAYKVGKFAGSVTLLVEAQEDGIMHSHLVPQGKQVKVGTPVALMAEQGQSLPDLDGY-KPPENVYAE-GSQDRTLIWQSYLK 132
BLAST of mRNA_A-nodosum_M_contig1162.14.1 vs. uniprot
Match: A0A836C7G3_9CHLO (Ion_trans domain-containing protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836C7G3_9CHLO) HSP 1 Score: 77.8 bits (190), Expect = 4.480e-11 Identity = 41/94 (43.62%), Postives = 59/94 (62.77%), Query Frame = 3
Query: 630 ALYLPMPKLSPSMTEGTITAWHKAEGDEVDEYDTMMEITTDSLYAAGDGGEG--GPVKMVIEVVEAGFVGKLLAAQGDTVKVGRPVMVMCEEEE 905
A+ LPMPKLS +MT G I WH EGD V EYD ++ + T++L + G V +++E E G V +L+AA+G+ V VGRP+M++ E E
Sbjct: 54 AIVLPMPKLSHNMTSGRIERWHVREGDVVKEYDVVLTVATETLVEEAYRLDQFKGTVSLLVESQEEGVVARLMAAEGEEVPVGRPIMLLAEGSE 147
BLAST of mRNA_A-nodosum_M_contig1162.14.1 vs. uniprot
Match: A0A7S2Z4P7_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chloropicon laureae TaxID=464258 RepID=A0A7S2Z4P7_9CHLO) HSP 1 Score: 68.9 bits (167), Expect = 2.710e-10 Identity = 40/109 (36.70%), Postives = 63/109 (57.80%), Query Frame = 3
Query: 588 IWGSRRASSAMPDDALYLPMPKLSPSMTEGTITAWHKAEGDEVDEYDTMMEITTDSLYAAGDGGEGGPVKMVIEVVEAGFVGKLLAAQGDT-VKVGRPVMVMCEEEENV 911
+ G+R SS P L MP LSP+MT+GT++AW K+EG+ ++ D + E+ TD + E V++GF+ K+L G + + +G PV V+CEEEE++
Sbjct: 34 LGGARAFSSDYPPHTA-LGMPSLSPTMTQGTLSAWKKSEGEAIEAGDILAEVETDKA------------SIEWEAVDSGFLAKILVQDGASDLDIGVPVAVVCEEEEDI 129
BLAST of mRNA_A-nodosum_M_contig1162.14.1 vs. uniprot
Match: A0A7X5Q5R3_9BACT (Dihydrolipoyllysine-residue acetyltransferase n=1 Tax=Chlamydiae bacterium TaxID=2081524 RepID=A0A7X5Q5R3_9BACT) HSP 1 Score: 68.2 bits (165), Expect = 3.920e-10 Identity = 43/135 (31.85%), Postives = 69/135 (51.11%), Query Frame = 3
Query: 639 LPMPKLSPSMTEGTITAWHKAEGDEVDEYDTMMEITTDSLYAAGDGGEGGPVKMVIE--VVEAGFVGKLLAAQGDTVKVGRPVMVMCEE-EENVDTLR----AAPTPPIDLYGDDASKFRMATYQGYLQESTQEK 1022
L MPKLSP+M EGT+ WH EGD V+ D ++E+ TD K +E ++AG+V K+L ++G T +V +P+ + E +E+++ A P PP++ G R+ L+ + EK
Sbjct: 5 LTMPKLSPTMEEGTLVKWHVKEGDHVEVGDVLIEVATD--------------KATVEHSALDAGYVRKILISEGSTARVNQPIAIFTESADESIEGYEPEGEAPPPPPVETSGRPQYTLRLEIVLMCLKNVSAEK 125
BLAST of mRNA_A-nodosum_M_contig1162.14.1 vs. uniprot
Match: A0A7S3UBB1_9CHLO (Hypothetical protein n=1 Tax=Picocystis salinarum TaxID=88271 RepID=A0A7S3UBB1_9CHLO) HSP 1 Score: 70.9 bits (172), Expect = 9.740e-10 Identity = 46/122 (37.70%), Postives = 63/122 (51.64%), Query Frame = 3
Query: 549 VFVGCRRKPAHGNIWGSRRASSAMPDDALYLPMPKLSPSMTEGTITAWHKAEGDEVDEYDTMMEITTDSLYAAGDGGEGGPVKMVIEVVEAGFVGKLLAAQGDT-VKVGRPVMVMCEEEENV 911
VG R PA G A+ +P + LPMP LSP+M EGT++AW K EGD V+ D + +I TD M +E +E GF+ K+LA G V VG PV ++ EE++
Sbjct: 88 AVVGKRALPASGVSHTRGFAAGTLPPHEV-LPMPALSPTMVEGTVSAWKKQEGDAVNTGDVLADIETDKAT------------MEMETMEDGFLAKILAPAGSANVAVGTPVAILVTSEEDI 196
BLAST of mRNA_A-nodosum_M_contig1162.14.1 vs. uniprot
Match: A0A6I7PHP1_9PROT (Acetyltransferase component of pyruvate dehydrogenase complex n=1 Tax=Geminicoccaceae bacterium TaxID=2448052 RepID=A0A6I7PHP1_9PROT) HSP 1 Score: 70.5 bits (171), Expect = 3.400e-9 Identity = 45/109 (41.28%), Postives = 57/109 (52.29%), Query Frame = 3
Query: 645 MPKLSPSMTEGTITAWHKAEGDEVDEYDTMMEITTDSLYAAGDGGEGGPVKMVIEVVEAGFVGKLLAAQG-DTVKVGRPVMVMCEEEENVDTL---------RAAPTPP 941
MP LSP+MTEGT+ AWHKAEGD V D + EI TD M +E V+ G +GK+L G D V V P+ ++ EE E+ +L AAPT P
Sbjct: 7 MPALSPTMTEGTLAAWHKAEGDAVKAGDVLAEIETDKAT------------MEVEAVDEGTLGKILVPAGADNVAVNTPIALLLEEGEDAASLADAQAKRPKEAAPTAP 103
BLAST of mRNA_A-nodosum_M_contig1162.14.1 vs. uniprot
Match: UPI0013A6A948 (pyruvate dehydrogenase complex E1 component subunit beta n=1 Tax=Lentilitoribacter sp. Alg239-R112 TaxID=2305987 RepID=UPI0013A6A948) HSP 1 Score: 70.5 bits (171), Expect = 3.900e-9 Identity = 40/98 (40.82%), Postives = 56/98 (57.14%), Query Frame = 3
Query: 645 MPKLSPSMTEGTITAWHKAEGDEVDEYDTMMEITTDSLYAAGDGGEGGPVKMVIEVVEAGFVGKLLAAQG-DTVKVGRPVMVMCEEEENVDTLRAAPT 935
MP LSP+M EG +T W KAEGD V D + EI TD M +E V+ G +GK++ A+G ++VKV + V+ EE E+ D + +APT
Sbjct: 7 MPALSPTMEEGNLTKWLKAEGDAVSSGDILAEIETDKAT------------MEVEAVDEGVIGKIMVAEGTESVKVNSVIAVLLEEGESADAIGSAPT 92 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1162.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1162.14.1 >prot_A-nodosum_M_contig1162.14.1 ID=prot_A-nodosum_M_contig1162.14.1|Name=mRNA_A-nodosum_M_contig1162.14.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=192bp MRIQVVRSFQAAARSQHLSSCPRVLCGSQGKGAVFVGCRRKPAHGNIWGSback to top mRNA from alignment at A-nodosum_M_contig1162:87326..91696- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig1162.14.1 ID=mRNA_A-nodosum_M_contig1162.14.1|Name=mRNA_A-nodosum_M_contig1162.14.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=4371bp|location=Sequence derived from alignment at A-nodosum_M_contig1162:87326..91696- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1162:87326..91696- >mRNA_A-nodosum_M_contig1162.14.1 ID=mRNA_A-nodosum_M_contig1162.14.1|Name=mRNA_A-nodosum_M_contig1162.14.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=576bp|location=Sequence derived from alignment at A-nodosum_M_contig1162:87326..91696- (Ascophyllum nodosum dioecious)back to top |