mRNA_A-nodosum_M_contig11607.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig11607.2.1
Unique NamemRNA_A-nodosum_M_contig11607.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig11607.2.1 vs. uniprot
Match: A0A6H5KVU5_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVU5_9PHAE)

HSP 1 Score: 137 bits (345), Expect = 2.940e-35
Identity = 76/112 (67.86%), Postives = 89/112 (79.46%), Query Frame = 1 
Query:    1 YPNMARVARVLLSMPASAAVLERDFSTAGRLITGSRSRMAGEYVEMTLFLNGNKEYIPVEVPSLPESQMKEAVPRRLTNPRAEVAALSTGVEDVVPVVVFDANINDEYAAEA 336
            YPNMAR ARVLLS+PAS+AVLERDFSTAGRLITG+RSR++  YVEM LFLNGN+EYIP+EVP L +SQ +EAVPRRL+NP  E   LS G  +VVP    D N  DE+A E+
Sbjct:  724 YPNMARAARVLLSVPASSAVLERDFSTAGRLITGARSRLSAAYVEMVLFLNGNQEYIPMEVPKLSKSQGQEAVPRRLSNPNEETERLSVG--EVVP----DTN-TDEFAEES 828
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BLAST of mRNA_A-nodosum_M_contig11607.2.1 vs. uniprot
Match: A0A6H5JZ82_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ82_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 6.210e-19
Identity = 52/106 (49.06%), Postives = 68/106 (64.15%), Query Frame = 1 
Query:    1 YPNMARVARVLLSMPASAAVLERDFSTAGRLITGSRSRMAGEYVEMTLFLNGNKEYIPVEVPSLPESQMKEAVPRRLTNPRAEVAALSTGVEDVVPVVVFDANIND 318
            YP +ARVARV+   PASAAVLERDFS AGR++T SRS M  +YVEM +FL+GN + IP ++  L E+  +  +P RL NP   +  L  GV    PV + D   +D
Sbjct:  618 YPLLARVARVVFGAPASAAVLERDFSNAGRMMTSSRSTMDSKYVEMIMFLHGNLDLIPEDITKLTEAAARTKIPGRLANPVERLEQLD-GV--FAPVDLTDEEASD 720
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BLAST of mRNA_A-nodosum_M_contig11607.2.1 vs. uniprot
Match: A0A6H5KCJ3_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCJ3_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 7.680e-19
Identity = 45/81 (55.56%), Postives = 57/81 (70.37%), Query Frame = 1 
Query:    1 YPNMARVARVLLSMPASAAVLERDFSTAGRLITGSRSRM-AGEYVEMTLFLNGNKEYIPVEVPSLPESQMKEAVPRRLTNP 240
            YP +ARVARV+   PASAAVLERDFS AGR++T SR  M +  YVEM LFL+GN + IP ++  L E+  +  +P RL NP
Sbjct:    6 YPLLARVARVVFGAPASAAVLERDFSNAGRMMTSSRRTMDSTTYVEMILFLHGNLDLIPEDITKLTEAVARSKIPGRLANP 86
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BLAST of mRNA_A-nodosum_M_contig11607.2.1 vs. uniprot
Match: A0A6H5JNY1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNY1_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 3.180e-17
Identity = 44/80 (55.00%), Postives = 57/80 (71.25%), Query Frame = 1 
Query:    1 YPNMARVARVLLSMPASAAVLERDFSTAGRLITGSRSRMAGEYVEMTLFLNGNKEYIPVEVPSLPESQMKEAVPRRLTNP 240
            YP +ARVARV++   ASAAVLE DFS AGR++T SRS M  +YVEM LFL+GN + IP ++  L E+  +  +P RL NP
Sbjct:  391 YPLLARVARVVIGALASAAVLEHDFSNAGRMMTSSRSTMDSKYVEMILFLHGNLDLIPEDITKLTEAVARTKIPGRLANP 470
[Close]
BLAST of mRNA_A-nodosum_M_contig11607.2.1 vs. uniprot
Match: D8LBK4_ECTSI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK4_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 1.460e-15
Identity = 42/87 (48.28%), Postives = 58/87 (66.67%), Query Frame = 1 
Query:    1 YPNMARVARVLLSMPASAAVLERDFSTAGRLITGSRSRMAGEYVEMTLFLNGNKEYIPVEVPSLPESQMKEAVPRRLTNPRAEVAAL 261
            YP +AR ARV+   PASAAVLERDF+ A  ++  SRS    +YVEM LFL+GN + IP ++P L +  ++  +P RL+NP  E+  L
Sbjct:  558 YPLLARAARVVFGAPASAAVLERDFTDAWCMMASSRSAGDAKYVEMVLFLHGNLDLIPEQIPELRDEDVQAKIPGRLSNPIPELHGL 644
[Close]
BLAST of mRNA_A-nodosum_M_contig11607.2.1 vs. uniprot
Match: A0A6H5L5L6_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5L6_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 2.040e-14
Identity = 41/79 (51.90%), Postives = 52/79 (65.82%), Query Frame = 1 
Query:    1 YPNMARVARVLLSMPASAAVLERDFSTAGRLITGSRSRMAGEYVEMTLFLNGNKEYIPVEVPSLPESQMKEAVPRRLTN 237
            YP +AR ARV+   PASAAVLE DF  AGR++T SRS    +YVEM LFL+GN + IP ++P+   +    A   RLTN
Sbjct:   48 YPLLARAARVVFGAPASAAVLEGDFGDAGRIMTSSRSTTDAKYVEMILFLHGNLDLIPEDIPACQPT----APSARLTN 122
[Close]
BLAST of mRNA_A-nodosum_M_contig11607.2.1 vs. uniprot
Match: H3GTQ6_PHYRM (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GTQ6_PHYRM)

HSP 1 Score: 60.8 bits (146), Expect = 1.620e-9
Identity = 36/103 (34.95%), Postives = 58/103 (56.31%), Query Frame = 1 
Query:   19 VARVLLSMPASAAVLERDFSTAGRLITGSRSRMAGEYVEMTLFLNGNKEYIPV-EVPSLPESQMKEAVPRR-LTNPRAEVAALSTGVEDVVPVVVFDANINDE 321
            VARV+ S+P+S+A +ERDF TAGR++T  R+ +A   V+MT FLN N+ Y+ + + P +  +   E VP   + N   E       + +      FD  ++D+
Sbjct:   10 VARVVFSLPSSSAQIERDFGTAGRMVTPQRNSLASHNVDMTTFLNCNRCYVNIAQCPKVSAAAASERVPSNVMVNILQEQDDNWNSLAEFFSATSFDLGVSDD 112
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BLAST of mRNA_A-nodosum_M_contig11607.2.1 vs. uniprot
Match: A0A225UGF7_9STRA (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UGF7_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 1.940e-9
Identity = 35/73 (47.95%), Postives = 48/73 (65.75%), Query Frame = 1 
Query:   19 VARVLLSMPASAAVLERDFSTAGRLITGSRSRMAGEYVEMTLFLNGNKEYIPVEVPSLPESQMKEAVPRRLTN 237
            VARVL S+P+S+A +ERDF TAGR++T  RS +A   V+MT FLN N+ Y  V++   P+     A  RR +N
Sbjct:   42 VARVLFSIPSSSAQIERDFGTAGRMVTSQRSSLAPCNVDMTTFLNCNRTY--VDITQCPKLSPNTADERRPSN 112
[Close]
BLAST of mRNA_A-nodosum_M_contig11607.2.1 vs. uniprot
Match: A0A662XG42_9STRA (Dimer_Tnp_hAT domain-containing protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XG42_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 8.720e-9
Identity = 33/69 (47.83%), Postives = 46/69 (66.67%), Query Frame = 1 
Query:   19 VARVLLSMPASAAVLERDFSTAGRLITGSRSRMAGEYVEMTLFLNGNKEYIPV-EVPSLPESQMKEAVP 222
            VARVL SMP+S+A +ERDF TAGR++T  RS +A   V+M  FL+ N  Y+ + + P L +S   E +P
Sbjct:  151 VARVLFSMPSSSAQIERDFGTAGRMVTPQRSSLAPYNVDMATFLSCNTSYVDITQCPKLSQSTATERLP 219
[Close]
BLAST of mRNA_A-nodosum_M_contig11607.2.1 vs. uniprot
Match: A0A662XSL6_9STRA (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XSL6_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 3.300e-8
Identity = 32/69 (46.38%), Postives = 46/69 (66.67%), Query Frame = 1 
Query:   19 VARVLLSMPASAAVLERDFSTAGRLITGSRSRMAGEYVEMTLFLNGNKEYIPV-EVPSLPESQMKEAVP 222
            VARVL S P+S+A +ERDF TAGR++T  RS +A   V+M  FL+ N+ Y+ + + P L +S   E +P
Sbjct:  232 VARVLFSKPSSSAQIERDFGTAGRMVTPQRSSLAPYNVDMATFLSCNRSYVDITQCPKLSQSTATERLP 300
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig11607.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KVU5_9PHAE2.940e-3567.86Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JZ82_9PHAE6.210e-1949.06Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KCJ3_9PHAE7.680e-1955.56Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JNY1_9PHAE3.180e-1755.00Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
D8LBK4_ECTSI1.460e-1548.28Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5L5L6_9PHAE2.040e-1451.90Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
H3GTQ6_PHYRM1.620e-934.95Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ph... [more]
A0A225UGF7_9STRA1.940e-947.95Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ph... [more]
A0A662XG42_9STRA8.720e-947.83Dimer_Tnp_hAT domain-containing protein (Fragment)... [more]
A0A662XSL6_9STRA3.300e-846.38Dimer_Tnp_hAT domain-containing protein n=1 Tax=No... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig11607contigA-nodosum_M_contig11607:10214..10561 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog164328.Phyra80540
Model size348
Max annot lvl4776|Peronosporales
Hectar predicted targeting categorysignal peptide
Exons1
Evalue2.42e-10
EggNOG OGs299R4@1|root,2RGTA@2759|Eukaryota,3QIGE@4776|Peronosporales
Cds size339
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866566.2117064-UTR-A-nodosum_M_contig11607:10213..102221680866566.2117064-UTR-A-nodosum_M_contig11607:10213..10222Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig11607 10214..10222 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866566.2219434-CDS-A-nodosum_M_contig11607:10222..105611680866566.2219434-CDS-A-nodosum_M_contig11607:10222..10561Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig11607 10223..10561 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig11607.2.1prot_A-nodosum_M_contig11607.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig11607 10223..10561 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig11607.2.1

>prot_A-nodosum_M_contig11607.2.1 ID=prot_A-nodosum_M_contig11607.2.1|Name=mRNA_A-nodosum_M_contig11607.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=113bp
MARVARVLLSMPASAAVLERDFSTAGRLITGSRSRMAGEYVEMTLFLNGN
KEYIPVEVPSLPESQMKEAVPRRLTNPRAEVAALSTGVEDVVPVVVFDAN
INDEYAAEATSV*
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mRNA from alignment at A-nodosum_M_contig11607:10214..10561+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig11607.2.1 ID=mRNA_A-nodosum_M_contig11607.2.1|Name=mRNA_A-nodosum_M_contig11607.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=348bp|location=Sequence derived from alignment at A-nodosum_M_contig11607:10214..10561+ (Ascophyllum nodosum dioecious)
TACCCGAACATGGCGCGCGTGGCTCGAGTTCTTCTGTCTATGCCGGCATC
TGCTGCCGTCCTCGAGAGGGACTTCAGCACGGCCGGGCGCCTCATCACCG
GGTCCCGTAGCCGGATGGCgGGTGAATACGTGGAGATGACGCTGTTTCTC
AACGGCAACAAGGAATACATCCCCGTGGAGGTGCCCTCCCTGCCAGAAAG
TCAGATGAAGGAGGCGGTGCCTCGTCGGCTCACCAACCCCAGGGCAGAGG
TGGCGGCCCTCTCTACCGGCGTGGAGGACGTCGTTCCCGTCGTGGTCTTC
GACGCCAACATCAACGACGAGTACGCGGCAGAGGCTACCTCCGTCTAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig11607:10214..10561+

>mRNA_A-nodosum_M_contig11607.2.1 ID=mRNA_A-nodosum_M_contig11607.2.1|Name=mRNA_A-nodosum_M_contig11607.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=339bp|location=Sequence derived from alignment at A-nodosum_M_contig11607:10214..10561+ (Ascophyllum nodosum dioecious)
ATGGCGCGCGTGGCTCGAGTTCTTCTGTCTATGCCGGCATCTGCTGCCGT
CCTCGAGAGGGACTTCAGCACGGCCGGGCGCCTCATCACCGGGTCCCGTA
GCCGGATGGCgGGTGAATACGTGGAGATGACGCTGTTTCTCAACGGCAAC
AAGGAATACATCCCCGTGGAGGTGCCCTCCCTGCCAGAAAGTCAGATGAA
GGAGGCGGTGCCTCGTCGGCTCACCAACCCCAGGGCAGAGGTGGCGGCCC
TCTCTACCGGCGTGGAGGACGTCGTTCCCGTCGTGGTCTTCGACGCCAAC
ATCAACGACGAGTACGCGGCAGAGGCTACCTCCGTCTAG
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