mRNA_A-nodosum_M_contig1160.19.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig1160.19.1 vs. uniprot
Match: A0A1R3JQF5_COCAP (Uncharacterized protein n=1 Tax=Corchorus capsularis TaxID=210143 RepID=A0A1R3JQF5_COCAP) HSP 1 Score: 109 bits (273), Expect = 1.160e-25 Identity = 56/109 (51.38%), Postives = 67/109 (61.47%), Query Frame = 1
Query: 31 DEPTTLHEAKVSPEWPQWRGALKREMDGQIARGVWKVVDRPKGKTVLGTKTVFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMALLDWE 357
DEPTT EA PE +W A+K EMD A VW +VD PKG +G K +FK+K DG V YK RFVAKGFRQI G+ Y E+ SP SIR+ LA+ A D+E
Sbjct: 396 DEPTTYQEAVAGPESEKWLEAMKSEMDSMYANQVWTLVDPPKGIKPIGCKWLFKKKTDMDGNVHTYKGRFVAKGFRQIHGVDYDETFSPVAMLKSIRILLAIAAFYDYE 504
BLAST of mRNA_A-nodosum_M_contig1160.19.1 vs. uniprot
Match: A0A8J5YBS1_9ROSI (Uncharacterized protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5YBS1_9ROSI) HSP 1 Score: 108 bits (269), Expect = 6.000e-25 Identity = 55/109 (50.46%), Postives = 69/109 (63.30%), Query Frame = 1
Query: 31 DEPTTLHEAKVSPEWPQWRGALKREMDGQIARGVWKVVDRPKGKTVLGTKTVFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMALLDWE 357
DEP T EA SPE +W AL+ EMD VW +VD PKG +G K VFK+K+ DG V+ YK R VAKGFRQI G++Y E+ SP SIR++LA+ A D+E
Sbjct: 444 DEPRTYQEAVASPESEKWLEALRSEMDSMYENQVWTLVDPPKGVKPIGCKWVFKKKIDMDGNVQTYKGRLVAKGFRQIHGVNYDETFSPVAMFKSIRISLAIAAFHDYE 552
BLAST of mRNA_A-nodosum_M_contig1160.19.1 vs. uniprot
Match: A0A6P4M1H2_GOSAR (uncharacterized mitochondrial protein AtMg00820-like n=1 Tax=Gossypium arboreum TaxID=29729 RepID=A0A6P4M1H2_GOSAR) HSP 1 Score: 96.3 bits (238), Expect = 4.520e-23 Identity = 51/109 (46.79%), Postives = 64/109 (58.72%), Query Frame = 1
Query: 31 DEPTTLHEAKVSPEWPQWRGALKREMDGQIARGVWKVVDRPKGKTVLGTKTVFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMALLDWE 357
DEP T EA SP+ +W A+ EMD VW +VD P+G +G K VFK+K DG VE Y R VAKGFRQI G+ Y E+ SP SIR+ LA+ A ++E
Sbjct: 35 DEPRTDQEAVASPDSEKWLEAMISEMDSMYENQVWTLVDPPEGVKPIGCKWVFKKKTDMDGNVETYNGRLVAKGFRQIHGVDYDETFSPVAMFKSIRILLAIAAFHNYE 143
BLAST of mRNA_A-nodosum_M_contig1160.19.1 vs. uniprot
Match: Q7XLR4_ORYSJ (OSJNBb0093G06.7 protein n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q7XLR4_ORYSJ) HSP 1 Score: 102 bits (253), Expect = 8.680e-23 Identity = 50/109 (45.87%), Postives = 66/109 (60.55%), Query Frame = 1
Query: 31 DEPTTLHEAKVSPEWPQWRGALKREMDGQIARGVWKVVDRPKGKTVLGTKTVFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMALLDWE 357
DEPTT E V P+ +W GA+K E++ VW +VD P G + K VFK+K+ DG V YK + VAKGFRQI+G+ Y E+ SP SIR+ LA+ A D+E
Sbjct: 676 DEPTTYEETMVGPDSEKWLGAMKSEIESMHVNQVWNLVDPPDGVKAIECKWVFKKKIDIDGNVHMYKAQLVAKGFRQIQGVDYDETFSPIAMLKSIRIVLAIAAYFDYE 784
BLAST of mRNA_A-nodosum_M_contig1160.19.1 vs. uniprot
Match: A0A2I0J8X0_PUNGR (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Punica granatum TaxID=22663 RepID=A0A2I0J8X0_PUNGR) HSP 1 Score: 99.8 bits (247), Expect = 9.920e-23 Identity = 49/109 (44.95%), Postives = 67/109 (61.47%), Query Frame = 1
Query: 31 DEPTTLHEAKVSPEWPQWRGALKREMDGQIARGVWKVVDRPKGKTVLGTKTVFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMALLDWE 357
DEPTT EA + P+ +W A++ EM+ VW +VD P+G ++G K VFK+K DG V +K R VAKGFRQ+ G+ Y E+ SP SIR+ LA+ A D+E
Sbjct: 70 DEPTTYAEAVIGPDSEKWLVAMRSEMESMYTNQVWTLVDPPEGAKLIGYKWVFKKKTDMDGNVITFKRRLVAKGFRQVHGVDYDETFSPVAMLKSIRILLAIAAYYDYE 178
BLAST of mRNA_A-nodosum_M_contig1160.19.1 vs. uniprot
Match: A0A5N6P523_9ASTR (Integrase catalytic domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6P523_9ASTR) HSP 1 Score: 99.8 bits (247), Expect = 2.400e-22 Identity = 50/108 (46.30%), Postives = 68/108 (62.96%), Query Frame = 1
Query: 34 EPTTLHEAKVSPEWPQWRGALKREMDGQIARGVWKVVDRPKGKTVLGTKTVFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMALLDWE 357
EP T EA S E PQW+ A+K E+D + W++VD P G LG + +FKRK+ DG ++KYK R V KGFRQ +G+ Y ++ SP +SIR+ LA+ AL D E
Sbjct: 240 EPQTYREAVTSSEGPQWKEAIKNEIDSILQNHTWELVDLPSGFKPLGYRWIFKRKMKADGSIDKYKARLVIKGFRQKEGLDYFDTYSPVTRITSIRLMLAIAALRDLE 347
BLAST of mRNA_A-nodosum_M_contig1160.19.1 vs. uniprot
Match: A0A8J5ZF83_9ROSI (Uncharacterized protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5ZF83_9ROSI) HSP 1 Score: 99.4 bits (246), Expect = 6.090e-22 Identity = 50/109 (45.87%), Postives = 65/109 (59.63%), Query Frame = 1
Query: 31 DEPTTLHEAKVSPEWPQWRGALKREMDGQIARGVWKVVDRPKGKTVLGTKTVFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMALLDWE 357
DEP T E SP+ +W A++ EMD VW +VD P+G +G K VF++K DG V+ YK R VAKGFRQI G+ Y E+ SP SIR+ LA+ A D+E
Sbjct: 36 DEPRTYQEVVASPDSEKWLEAMRSEMDSMYENQVWTLVDPPEGVKPIGCKWVFRKKTDMDGNVQTYKRRLVAKGFRQIHGVDYDETFSPVAMFKSIRILLAIAAFHDYE 144
BLAST of mRNA_A-nodosum_M_contig1160.19.1 vs. uniprot
Match: A0A5N6PND6_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6PND6_9ASTR) HSP 1 Score: 97.8 bits (242), Expect = 7.150e-22 Identity = 50/118 (42.37%), Postives = 71/118 (60.17%), Query Frame = 1
Query: 4 PTGLASYLPDEPTTLHEAKVSPEWPQWRGALKREMDGQIARGVWKVVDRPKGKTVLGTKTVFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMALLDWE 357
P L + EP T +A S E PQW+ A+K E+D + W++VD P G LG + +FKRK+ DG ++KYK R V KGFRQ +G+ Y ++ SP +SIR+ LA+ AL + E
Sbjct: 60 PDFLTYMVEGEPQTYRDAVTSSEGPQWKEAIKNEIDSILQNHTWELVDLPPGCKPLGYRWIFKRKMKADGSIDKYKARLVIKGFRQKEGVDYFDTYSPVTRITSIRLVLAIAALRNLE 177
BLAST of mRNA_A-nodosum_M_contig1160.19.1 vs. uniprot
Match: A0A5N6PKD3_9ASTR (Integrase catalytic domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6PKD3_9ASTR) HSP 1 Score: 99.4 bits (246), Expect = 7.520e-22 Identity = 51/118 (43.22%), Postives = 74/118 (62.71%), Query Frame = 1
Query: 7 TGLASYLPD-EPTTLHEAKVSPEWPQWRGALKREMDGQIARGVWKVVDRPKGKTVLGTKTVFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMALLDWE 357
T +Y+ + EP T EA S E PQW+ A+K E+D + +W++VD P G LG + +FKRK+ DG ++KYK R V KGFRQ +G+ Y ++ SP +SIR+ LA+ AL + E
Sbjct: 281 TDFLTYMVEGEPQTYREAVTSSEGPQWKEAIKNEIDSILQNHIWELVDLPPGCKPLGYRWIFKRKMKADGSIDKYKARLVIKGFRQKEGLDYFDTYSPVTRITSIRLVLAIAALRNLE 398
BLAST of mRNA_A-nodosum_M_contig1160.19.1 vs. uniprot
Match: Q7Y1M7_ORYSJ (Putative polyprotein n=2 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q7Y1M7_ORYSJ) HSP 1 Score: 99.4 bits (246), Expect = 7.740e-22 Identity = 49/109 (44.95%), Postives = 64/109 (58.72%), Query Frame = 1
Query: 31 DEPTTLHEAKVSPEWPQWRGALKREMDGQIARGVWKVVDRPKGKTVLGTKTVFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMALLDWE 357
DEPTT EA V P+ +W GA+K E++ VW +VD P G + K +FK+ DG V Y R VAKGFRQI+G+ Y E+ SP SIR+ LA+ A D+E
Sbjct: 655 DEPTTYEEAMVGPDTEKWLGAMKSEIESMHVNQVWNLVDPPDGVKAIECKWIFKKMTDVDGTVHIYNARLVAKGFRQIQGVDYDETFSPVAMLKSIRIVLAIAAYFDYE 763 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1160.19.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig1160.19.1 >prot_A-nodosum_M_contig1160.19.1 ID=prot_A-nodosum_M_contig1160.19.1|Name=mRNA_A-nodosum_M_contig1160.19.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=119bp MPTGLASYLPDEPTTLHEAKVSPEWPQWRGALKREMDGQIARGVWKVVDRback to top mRNA from alignment at A-nodosum_M_contig1160:122966..123322+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig1160.19.1 ID=mRNA_A-nodosum_M_contig1160.19.1|Name=mRNA_A-nodosum_M_contig1160.19.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=357bp|location=Sequence derived from alignment at A-nodosum_M_contig1160:122966..123322+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig1160:122966..123322+ >mRNA_A-nodosum_M_contig1160.19.1 ID=mRNA_A-nodosum_M_contig1160.19.1|Name=mRNA_A-nodosum_M_contig1160.19.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=357bp|location=Sequence derived from alignment at A-nodosum_M_contig1160:122966..123322+ (Ascophyllum nodosum dioecious)back to top |