mRNA_A-nodosum_M_contig1160.19.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1160.19.1
Unique NamemRNA_A-nodosum_M_contig1160.19.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig1160.19.1 vs. uniprot
Match: A0A1R3JQF5_COCAP (Uncharacterized protein n=1 Tax=Corchorus capsularis TaxID=210143 RepID=A0A1R3JQF5_COCAP)

HSP 1 Score: 109 bits (273), Expect = 1.160e-25
Identity = 56/109 (51.38%), Postives = 67/109 (61.47%), Query Frame = 1
Query:   31 DEPTTLHEAKVSPEWPQWRGALKREMDGQIARGVWKVVDRPKGKTVLGTKTVFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMALLDWE 357
            DEPTT  EA   PE  +W  A+K EMD   A  VW +VD PKG   +G K +FK+K   DG V  YK RFVAKGFRQI G+ Y E+ SP     SIR+ LA+ A  D+E
Sbjct:  396 DEPTTYQEAVAGPESEKWLEAMKSEMDSMYANQVWTLVDPPKGIKPIGCKWLFKKKTDMDGNVHTYKGRFVAKGFRQIHGVDYDETFSPVAMLKSIRILLAIAAFYDYE 504          
BLAST of mRNA_A-nodosum_M_contig1160.19.1 vs. uniprot
Match: A0A8J5YBS1_9ROSI (Uncharacterized protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5YBS1_9ROSI)

HSP 1 Score: 108 bits (269), Expect = 6.000e-25
Identity = 55/109 (50.46%), Postives = 69/109 (63.30%), Query Frame = 1
Query:   31 DEPTTLHEAKVSPEWPQWRGALKREMDGQIARGVWKVVDRPKGKTVLGTKTVFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMALLDWE 357
            DEP T  EA  SPE  +W  AL+ EMD      VW +VD PKG   +G K VFK+K+  DG V+ YK R VAKGFRQI G++Y E+ SP     SIR++LA+ A  D+E
Sbjct:  444 DEPRTYQEAVASPESEKWLEALRSEMDSMYENQVWTLVDPPKGVKPIGCKWVFKKKIDMDGNVQTYKGRLVAKGFRQIHGVNYDETFSPVAMFKSIRISLAIAAFHDYE 552          
BLAST of mRNA_A-nodosum_M_contig1160.19.1 vs. uniprot
Match: A0A6P4M1H2_GOSAR (uncharacterized mitochondrial protein AtMg00820-like n=1 Tax=Gossypium arboreum TaxID=29729 RepID=A0A6P4M1H2_GOSAR)

HSP 1 Score: 96.3 bits (238), Expect = 4.520e-23
Identity = 51/109 (46.79%), Postives = 64/109 (58.72%), Query Frame = 1
Query:   31 DEPTTLHEAKVSPEWPQWRGALKREMDGQIARGVWKVVDRPKGKTVLGTKTVFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMALLDWE 357
            DEP T  EA  SP+  +W  A+  EMD      VW +VD P+G   +G K VFK+K   DG VE Y  R VAKGFRQI G+ Y E+ SP     SIR+ LA+ A  ++E
Sbjct:   35 DEPRTDQEAVASPDSEKWLEAMISEMDSMYENQVWTLVDPPEGVKPIGCKWVFKKKTDMDGNVETYNGRLVAKGFRQIHGVDYDETFSPVAMFKSIRILLAIAAFHNYE 143          
BLAST of mRNA_A-nodosum_M_contig1160.19.1 vs. uniprot
Match: Q7XLR4_ORYSJ (OSJNBb0093G06.7 protein n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q7XLR4_ORYSJ)

HSP 1 Score: 102 bits (253), Expect = 8.680e-23
Identity = 50/109 (45.87%), Postives = 66/109 (60.55%), Query Frame = 1
Query:   31 DEPTTLHEAKVSPEWPQWRGALKREMDGQIARGVWKVVDRPKGKTVLGTKTVFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMALLDWE 357
            DEPTT  E  V P+  +W GA+K E++      VW +VD P G   +  K VFK+K+  DG V  YK + VAKGFRQI+G+ Y E+ SP     SIR+ LA+ A  D+E
Sbjct:  676 DEPTTYEETMVGPDSEKWLGAMKSEIESMHVNQVWNLVDPPDGVKAIECKWVFKKKIDIDGNVHMYKAQLVAKGFRQIQGVDYDETFSPIAMLKSIRIVLAIAAYFDYE 784          
BLAST of mRNA_A-nodosum_M_contig1160.19.1 vs. uniprot
Match: A0A2I0J8X0_PUNGR (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Punica granatum TaxID=22663 RepID=A0A2I0J8X0_PUNGR)

HSP 1 Score: 99.8 bits (247), Expect = 9.920e-23
Identity = 49/109 (44.95%), Postives = 67/109 (61.47%), Query Frame = 1
Query:   31 DEPTTLHEAKVSPEWPQWRGALKREMDGQIARGVWKVVDRPKGKTVLGTKTVFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMALLDWE 357
            DEPTT  EA + P+  +W  A++ EM+      VW +VD P+G  ++G K VFK+K   DG V  +K R VAKGFRQ+ G+ Y E+ SP     SIR+ LA+ A  D+E
Sbjct:   70 DEPTTYAEAVIGPDSEKWLVAMRSEMESMYTNQVWTLVDPPEGAKLIGYKWVFKKKTDMDGNVITFKRRLVAKGFRQVHGVDYDETFSPVAMLKSIRILLAIAAYYDYE 178          
BLAST of mRNA_A-nodosum_M_contig1160.19.1 vs. uniprot
Match: A0A5N6P523_9ASTR (Integrase catalytic domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6P523_9ASTR)

HSP 1 Score: 99.8 bits (247), Expect = 2.400e-22
Identity = 50/108 (46.30%), Postives = 68/108 (62.96%), Query Frame = 1
Query:   34 EPTTLHEAKVSPEWPQWRGALKREMDGQIARGVWKVVDRPKGKTVLGTKTVFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMALLDWE 357
            EP T  EA  S E PQW+ A+K E+D  +    W++VD P G   LG + +FKRK+  DG ++KYK R V KGFRQ +G+ Y ++ SP    +SIR+ LA+ AL D E
Sbjct:  240 EPQTYREAVTSSEGPQWKEAIKNEIDSILQNHTWELVDLPSGFKPLGYRWIFKRKMKADGSIDKYKARLVIKGFRQKEGLDYFDTYSPVTRITSIRLMLAIAALRDLE 347          
BLAST of mRNA_A-nodosum_M_contig1160.19.1 vs. uniprot
Match: A0A8J5ZF83_9ROSI (Uncharacterized protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5ZF83_9ROSI)

HSP 1 Score: 99.4 bits (246), Expect = 6.090e-22
Identity = 50/109 (45.87%), Postives = 65/109 (59.63%), Query Frame = 1
Query:   31 DEPTTLHEAKVSPEWPQWRGALKREMDGQIARGVWKVVDRPKGKTVLGTKTVFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMALLDWE 357
            DEP T  E   SP+  +W  A++ EMD      VW +VD P+G   +G K VF++K   DG V+ YK R VAKGFRQI G+ Y E+ SP     SIR+ LA+ A  D+E
Sbjct:   36 DEPRTYQEVVASPDSEKWLEAMRSEMDSMYENQVWTLVDPPEGVKPIGCKWVFRKKTDMDGNVQTYKRRLVAKGFRQIHGVDYDETFSPVAMFKSIRILLAIAAFHDYE 144          
BLAST of mRNA_A-nodosum_M_contig1160.19.1 vs. uniprot
Match: A0A5N6PND6_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6PND6_9ASTR)

HSP 1 Score: 97.8 bits (242), Expect = 7.150e-22
Identity = 50/118 (42.37%), Postives = 71/118 (60.17%), Query Frame = 1
Query:    4 PTGLASYLPDEPTTLHEAKVSPEWPQWRGALKREMDGQIARGVWKVVDRPKGKTVLGTKTVFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMALLDWE 357
            P  L   +  EP T  +A  S E PQW+ A+K E+D  +    W++VD P G   LG + +FKRK+  DG ++KYK R V KGFRQ +G+ Y ++ SP    +SIR+ LA+ AL + E
Sbjct:   60 PDFLTYMVEGEPQTYRDAVTSSEGPQWKEAIKNEIDSILQNHTWELVDLPPGCKPLGYRWIFKRKMKADGSIDKYKARLVIKGFRQKEGVDYFDTYSPVTRITSIRLVLAIAALRNLE 177          
BLAST of mRNA_A-nodosum_M_contig1160.19.1 vs. uniprot
Match: A0A5N6PKD3_9ASTR (Integrase catalytic domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6PKD3_9ASTR)

HSP 1 Score: 99.4 bits (246), Expect = 7.520e-22
Identity = 51/118 (43.22%), Postives = 74/118 (62.71%), Query Frame = 1
Query:    7 TGLASYLPD-EPTTLHEAKVSPEWPQWRGALKREMDGQIARGVWKVVDRPKGKTVLGTKTVFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMALLDWE 357
            T   +Y+ + EP T  EA  S E PQW+ A+K E+D  +   +W++VD P G   LG + +FKRK+  DG ++KYK R V KGFRQ +G+ Y ++ SP    +SIR+ LA+ AL + E
Sbjct:  281 TDFLTYMVEGEPQTYREAVTSSEGPQWKEAIKNEIDSILQNHIWELVDLPPGCKPLGYRWIFKRKMKADGSIDKYKARLVIKGFRQKEGLDYFDTYSPVTRITSIRLVLAIAALRNLE 398          
BLAST of mRNA_A-nodosum_M_contig1160.19.1 vs. uniprot
Match: Q7Y1M7_ORYSJ (Putative polyprotein n=2 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q7Y1M7_ORYSJ)

HSP 1 Score: 99.4 bits (246), Expect = 7.740e-22
Identity = 49/109 (44.95%), Postives = 64/109 (58.72%), Query Frame = 1
Query:   31 DEPTTLHEAKVSPEWPQWRGALKREMDGQIARGVWKVVDRPKGKTVLGTKTVFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSIRMALAVMALLDWE 357
            DEPTT  EA V P+  +W GA+K E++      VW +VD P G   +  K +FK+    DG V  Y  R VAKGFRQI+G+ Y E+ SP     SIR+ LA+ A  D+E
Sbjct:  655 DEPTTYEEAMVGPDTEKWLGAMKSEIESMHVNQVWNLVDPPDGVKAIECKWIFKKMTDVDGTVHIYNARLVAKGFRQIQGVDYDETFSPVAMLKSIRIVLAIAAYFDYE 763          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1160.19.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1R3JQF5_COCAP1.160e-2551.38Uncharacterized protein n=1 Tax=Corchorus capsular... [more]
A0A8J5YBS1_9ROSI6.000e-2550.46Uncharacterized protein n=1 Tax=Gossypium anomalum... [more]
A0A6P4M1H2_GOSAR4.520e-2346.79uncharacterized mitochondrial protein AtMg00820-li... [more]
Q7XLR4_ORYSJ8.680e-2345.87OSJNBb0093G06.7 protein n=1 Tax=Oryza sativa subsp... [more]
A0A2I0J8X0_PUNGR9.920e-2344.95Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5N6P523_9ASTR2.400e-2246.30Integrase catalytic domain-containing protein n=1 ... [more]
A0A8J5ZF83_9ROSI6.090e-2245.87Uncharacterized protein n=1 Tax=Gossypium anomalum... [more]
A0A5N6PND6_9ASTR7.150e-2242.37Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5N6PKD3_9ASTR7.520e-2243.22Integrase catalytic domain-containing protein n=1 ... [more]
Q7Y1M7_ORYSJ7.740e-2244.95Putative polyprotein n=2 Tax=Oryza sativa subsp. j... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1160contigA-nodosum_M_contig1160:122966..123322 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog15368.BRADI5G07075.1
PFAMsRVT_2
Model size357
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.94e-21
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,37YYP@33090|Viridiplantae,3GQD7@35493|Streptophyta,3M3FD@4447|Liliopsida,3IKKZ@38820|Poales
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
Cds size357
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866565.481346-CDS-A-nodosum_M_contig1160:122965..1233221680866565.481346-CDS-A-nodosum_M_contig1160:122965..123322Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1160 122966..123322 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1160.19.1prot_A-nodosum_M_contig1160.19.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1160 122966..123322 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1160.19.1

>prot_A-nodosum_M_contig1160.19.1 ID=prot_A-nodosum_M_contig1160.19.1|Name=mRNA_A-nodosum_M_contig1160.19.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=119bp
MPTGLASYLPDEPTTLHEAKVSPEWPQWRGALKREMDGQIARGVWKVVDR
PKGKTVLGTKTVFKRKVGQDGRVEKYKCRFVAKGFRQIKGIHYQESSSPT
PTQSSIRMALAVMALLDWE
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mRNA from alignment at A-nodosum_M_contig1160:122966..123322+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1160.19.1 ID=mRNA_A-nodosum_M_contig1160.19.1|Name=mRNA_A-nodosum_M_contig1160.19.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=357bp|location=Sequence derived from alignment at A-nodosum_M_contig1160:122966..123322+ (Ascophyllum nodosum dioecious)
ATGCCGACTGGTCTCGCGAGCTACCTACCGGACGAGCCTACCACCCTGCA CGAGGCTAAGGTGTCTCCCGAGTGGCCGCAATGGCGCGGCGCGCTCAAGC GCGAGATGGACGGCCAGATTGCGCGTGGTGTGTGGAAGGTCGTTGATCGA CCCAAAGGAAAAACCGTACTCGGCACCAAGACCGTTTTTAAACGGAAGGT CGGCCAGGATGGCCGTGTAGAAAAGTACAAATGCCGCTTCGTGGCCAAGG GTTTCCGCCAGATCAAGGGGATTCATTACCAAGAGTCATCGTCGCCGACA CCTACACAGTCGAGCATCCGGATGGCGCTGGCGGTGATGGCCCTGTTGGA CTGGGAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1160:122966..123322+

>mRNA_A-nodosum_M_contig1160.19.1 ID=mRNA_A-nodosum_M_contig1160.19.1|Name=mRNA_A-nodosum_M_contig1160.19.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=357bp|location=Sequence derived from alignment at A-nodosum_M_contig1160:122966..123322+ (Ascophyllum nodosum dioecious)
ATGCCGACTGGTCTCGCGAGCTACCTACCGGACGAGCCTACCACCCTGCA
CGAGGCTAAGGTGTCTCCCGAGTGGCCGCAATGGCGCGGCGCGCTCAAGC
GCGAGATGGACGGCCAGATTGCGCGTGGTGTGTGGAAGGTCGTTGATCGA
CCCAAAGGAAAAACCGTACTCGGCACCAAGACCGTTTTTAAACGGAAGGT
CGGCCAGGATGGCCGTGTAGAAAAGTACAAATGCCGCTTCGTGGCCAAGG
GTTTCCGCCAGATCAAGGGGATTCATTACCAAGAGTCATCGTCGCCGACA
CCTACACAGTCGAGCATCCGGATGGCGCTGGCGGTGATGGCCCTGTTGGA
CTGGGAG
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