mRNA_A-nodosum_M_contig1160.16.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1160.16.1
Unique NamemRNA_A-nodosum_M_contig1160.16.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig1160.16.1 vs. uniprot
Match: A0A6H5J7E3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7E3_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 2.040e-7
Identity = 26/37 (70.27%), Postives = 33/37 (89.19%), Query Frame = 1 
Query:  190 LRELSEKHGILIKFVDDGDASGVAQVAALAKAHGICI 300
            +R L+EKHGI+++FVDDG ASGV+QV ALA+AHGI I
Sbjct:  318 IRNLAEKHGIVVRFVDDGAASGVSQVRALARAHGIRI 354
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1160.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5J7E3_9PHAE2.040e-770.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1160contigA-nodosum_M_contig1160:90615..90917 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size305
Hectar predicted targeting categoryother localisation
Exons1
Cds size303
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866565.3008184-CDS-A-nodosum_M_contig1160:90614..909171680866565.3008184-CDS-A-nodosum_M_contig1160:90614..90917Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1160 90615..90917 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1160.16.1prot_A-nodosum_M_contig1160.16.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1160 90615..90917 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1160.16.1

>prot_A-nodosum_M_contig1160.16.1 ID=prot_A-nodosum_M_contig1160.16.1|Name=mRNA_A-nodosum_M_contig1160.16.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=101bp
TSSSSRAPGPVSASASSSANGAPAYIESERSEGSDHGEPTVIAKPDDHGE
PTGTQGVRGIEECLRELSEKHGILIKFVDDGDASGVAQVAALAKAHGICI
R
back to top

mRNA from alignment at A-nodosum_M_contig1160:90615..90917+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1160.16.1 ID=mRNA_A-nodosum_M_contig1160.16.1|Name=mRNA_A-nodosum_M_contig1160.16.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=303bp|location=Sequence derived from alignment at A-nodosum_M_contig1160:90615..90917+ (Ascophyllum nodosum dioecious)
ACTTCGAGTTCTTCAAGAGCGCCTGGACCTGTATCGGCTTCTGCTTCGTC
GAGCGCAAACGGAGCTCCAGCTTACATCGAAAGCGAGCGATCTGAAGGGT
CGGACCATGGCGAGCCTACAGTAATCGCTAAACCGGATGACCATGGCGAG
CCTACAGGCACGCAGGGGGTCCGCGGAATTGAAGAATGCCTCCGGGAGCT
GTCAGAAAAACATGGAATCTTGATCAAGTTCGTCGATGACGGCGATGCCT
CGGGCGTTGCGCAGGTCGCAGCCTTGGCCAAGGCTCACGGAATCTGCATT
CGT
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig1160:90615..90917+

>mRNA_A-nodosum_M_contig1160.16.1 ID=mRNA_A-nodosum_M_contig1160.16.1|Name=mRNA_A-nodosum_M_contig1160.16.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=303bp|location=Sequence derived from alignment at A-nodosum_M_contig1160:90615..90917+ (Ascophyllum nodosum dioecious)
ACTTCGAGTTCTTCAAGAGCGCCTGGACCTGTATCGGCTTCTGCTTCGTC
GAGCGCAAACGGAGCTCCAGCTTACATCGAAAGCGAGCGATCTGAAGGGT
CGGACCATGGCGAGCCTACAGTAATCGCTAAACCGGATGACCATGGCGAG
CCTACAGGCACGCAGGGGGTCCGCGGAATTGAAGAATGCCTCCGGGAGCT
GTCAGAAAAACATGGAATCTTGATCAAGTTCGTCGATGACGGCGATGCCT
CGGGCGTTGCGCAGGTCGCAGCCTTGGCCAAGGCTCACGGAATCTGCATT
CGT
back to top