mRNA_A-nodosum_M_contig116.62.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig116.62.1 vs. uniprot
Match: A0A1R3JQF5_COCAP (Uncharacterized protein n=1 Tax=Corchorus capsularis TaxID=210143 RepID=A0A1R3JQF5_COCAP) HSP 1 Score: 105 bits (263), Expect = 2.520e-24 Identity = 55/115 (47.83%), Postives = 68/115 (59.13%), Query Frame = 1
Query: 1 EPTTLHEAKVSPEWPQWRGALKREMDGQITRGVWKVVDRPKGKTVLGTKTVFKRKVGRDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSTRMALAVMGLLDWEGRQLDVE 345
EPTT EA PE +W A+K EMD VW +VD PKG +G K +FK+K DG V YK RFVAKGFRQI G+ Y E+ SP S R+ LA+ D+E Q+DV+
Sbjct: 397 EPTTYQEAVAGPESEKWLEAMKSEMDSMYANQVWTLVDPPKGIKPIGCKWLFKKKTDMDGNVHTYKGRFVAKGFRQIHGVDYDETFSPVAMLKSIRILLAIAAFYDYEIWQMDVK 511
BLAST of mRNA_A-nodosum_M_contig116.62.1 vs. uniprot
Match: A0A8J5YBS1_9ROSI (Uncharacterized protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5YBS1_9ROSI) HSP 1 Score: 105 bits (263), Expect = 3.450e-24 Identity = 55/115 (47.83%), Postives = 71/115 (61.74%), Query Frame = 1
Query: 1 EPTTLHEAKVSPEWPQWRGALKREMDGQITRGVWKVVDRPKGKTVLGTKTVFKRKVGRDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSTRMALAVMGLLDWEGRQLDVE 345
EP T EA SPE +W AL+ EMD VW +VD PKG +G K VFK+K+ DG V+ YK R VAKGFRQI G++Y E+ SP S R++LA+ D+E Q+DV+
Sbjct: 445 EPRTYQEAVASPESEKWLEALRSEMDSMYENQVWTLVDPPKGVKPIGCKWVFKKKIDMDGNVQTYKGRLVAKGFRQIHGVNYDETFSPVAMFKSIRISLAIAAFHDYEIWQMDVK 559
BLAST of mRNA_A-nodosum_M_contig116.62.1 vs. uniprot
Match: UPI0015A81C6A (uncharacterized mitochondrial protein AtMg00820-like n=1 Tax=Stegodyphus dumicola TaxID=202533 RepID=UPI0015A81C6A) HSP 1 Score: 96.3 bits (238), Expect = 5.010e-23 Identity = 47/112 (41.96%), Postives = 70/112 (62.50%), Query Frame = 1
Query: 1 EPTTLHEAKVSPEWPQWRGALKREMDGQITRGVWKVVDRPKGKTVLGTKTVFKRKVGRDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSTRMALAVMGLLDWEGRQL 336
+P TL EA SP+ +W+ A++ E++ W +V RP+G+ V+ K VFKRK+ +DG+VE+YK R VA+G+ Q++GI Y+E+ SP S R LA DW+ QL
Sbjct: 30 DPETLEEALTSPDAEKWKLAMEEELENLKRNETWDIVPRPEGRKVVKCKWVFKRKLNKDGQVERYKARLVARGYTQVEGIDYKETFSPVIKTKSIRTLLAFSVEQDWQVHQL 141
BLAST of mRNA_A-nodosum_M_contig116.62.1 vs. uniprot
Match: A0A2I0J8X0_PUNGR (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Punica granatum TaxID=22663 RepID=A0A2I0J8X0_PUNGR) HSP 1 Score: 99.4 bits (246), Expect = 1.240e-22 Identity = 50/115 (43.48%), Postives = 70/115 (60.87%), Query Frame = 1
Query: 1 EPTTLHEAKVSPEWPQWRGALKREMDGQITRGVWKVVDRPKGKTVLGTKTVFKRKVGRDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSTRMALAVMGLLDWEGRQLDVE 345
EPTT EA + P+ +W A++ EM+ T VW +VD P+G ++G K VFK+K DG V +K R VAKGFRQ+ G+ Y E+ SP S R+ LA+ D+E Q+DV+
Sbjct: 71 EPTTYAEAVIGPDSEKWLVAMRSEMESMYTNQVWTLVDPPEGAKLIGYKWVFKKKTDMDGNVITFKRRLVAKGFRQVHGVDYDETFSPVAMLKSIRILLAIAAYYDYEIWQMDVK 185
BLAST of mRNA_A-nodosum_M_contig116.62.1 vs. uniprot
Match: A0A5N6PKD3_9ASTR (Integrase catalytic domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6PKD3_9ASTR) HSP 1 Score: 100 bits (250), Expect = 1.940e-22 Identity = 50/115 (43.48%), Postives = 72/115 (62.61%), Query Frame = 1
Query: 1 EPTTLHEAKVSPEWPQWRGALKREMDGQITRGVWKVVDRPKGKTVLGTKTVFKRKVGRDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSTRMALAVMGLLDWEGRQLDVE 345
EP T EA S E PQW+ A+K E+D + +W++VD P G LG + +FKRK+ DG ++KYK R V KGFRQ +G+ Y ++ SP +S R+ LA+ L + E Q+DV+
Sbjct: 291 EPQTYREAVTSSEGPQWKEAIKNEIDSILQNHIWELVDLPPGCKPLGYRWIFKRKMKADGSIDKYKARLVIKGFRQKEGLDYFDTYSPVTRITSIRLVLAIAALRNLEVHQMDVK 405
BLAST of mRNA_A-nodosum_M_contig116.62.1 vs. uniprot
Match: A0A5N6PND6_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6PND6_9ASTR) HSP 1 Score: 99.0 bits (245), Expect = 2.370e-22 Identity = 49/115 (42.61%), Postives = 71/115 (61.74%), Query Frame = 1
Query: 1 EPTTLHEAKVSPEWPQWRGALKREMDGQITRGVWKVVDRPKGKTVLGTKTVFKRKVGRDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSTRMALAVMGLLDWEGRQLDVE 345
EP T +A S E PQW+ A+K E+D + W++VD P G LG + +FKRK+ DG ++KYK R V KGFRQ +G+ Y ++ SP +S R+ LA+ L + E Q+DV+
Sbjct: 70 EPQTYRDAVTSSEGPQWKEAIKNEIDSILQNHTWELVDLPPGCKPLGYRWIFKRKMKADGSIDKYKARLVIKGFRQKEGVDYFDTYSPVTRITSIRLVLAIAALRNLEVHQMDVK 184
BLAST of mRNA_A-nodosum_M_contig116.62.1 vs. uniprot
Match: A0A5N6P275_9ASTR (Integrase catalytic domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6P275_9ASTR) HSP 1 Score: 100 bits (248), Expect = 2.680e-22 Identity = 50/115 (43.48%), Postives = 71/115 (61.74%), Query Frame = 1
Query: 1 EPTTLHEAKVSPEWPQWRGALKREMDGQITRGVWKVVDRPKGKTVLGTKTVFKRKVGRDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSTRMALAVMGLLDWEGRQLDVE 345
EP T +A S E PQW+ A+K E+D + W++VD P G LG + +FKRK+ DG ++KYK R V KGFRQ +G+ Y +S SP +S R+ LA+ L + E Q+DV+
Sbjct: 284 EPQTYRDAVTSSEGPQWKEAIKNEIDSILQNHTWELVDLPPGCKPLGYRWIFKRKMKADGSIDKYKARLVIKGFRQKEGVDYFDSYSPVTRITSIRLVLAIAALRNLEVHQMDVK 398
BLAST of mRNA_A-nodosum_M_contig116.62.1 vs. uniprot
Match: Q7XLR4_ORYSJ (OSJNBb0093G06.7 protein n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q7XLR4_ORYSJ) HSP 1 Score: 100 bits (248), Expect = 3.660e-22 Identity = 50/115 (43.48%), Postives = 68/115 (59.13%), Query Frame = 1
Query: 1 EPTTLHEAKVSPEWPQWRGALKREMDGQITRGVWKVVDRPKGKTVLGTKTVFKRKVGRDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSTRMALAVMGLLDWEGRQLDVE 345
EPTT E V P+ +W GA+K E++ VW +VD P G + K VFK+K+ DG V YK + VAKGFRQI+G+ Y E+ SP S R+ LA+ D+E Q+DV+
Sbjct: 677 EPTTYEETMVGPDSEKWLGAMKSEIESMHVNQVWNLVDPPDGVKAIECKWVFKKKIDIDGNVHMYKAQLVAKGFRQIQGVDYDETFSPIAMLKSIRIVLAIAAYFDYEIWQMDVK 791
BLAST of mRNA_A-nodosum_M_contig116.62.1 vs. uniprot
Match: A0A5N6NZH6_9ASTR (Integrase catalytic domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6NZH6_9ASTR) HSP 1 Score: 100 bits (248), Expect = 3.750e-22 Identity = 50/115 (43.48%), Postives = 71/115 (61.74%), Query Frame = 1
Query: 1 EPTTLHEAKVSPEWPQWRGALKREMDGQITRGVWKVVDRPKGKTVLGTKTVFKRKVGRDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSTRMALAVMGLLDWEGRQLDVE 345
EP T EA S E PQW+ A+K E+D + +W++VD P G LG + +FKRK+ DG ++KYK R V KGFRQ +G Y ++ SP +S R+ LA+ L + E Q+DV+
Sbjct: 388 EPQTYREAVTSSEGPQWKEAIKNEIDSILQNHIWELVDLPPGCKPLGYRWIFKRKMKADGSIDKYKARLVIKGFRQKQGFDYFDTYSPVTRITSIRLVLAIAALRNLEVHQMDVK 502
BLAST of mRNA_A-nodosum_M_contig116.62.1 vs. uniprot
Match: A0A5N6NFL8_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6NFL8_9ASTR) HSP 1 Score: 99.8 bits (247), Expect = 4.350e-22 Identity = 50/115 (43.48%), Postives = 71/115 (61.74%), Query Frame = 1
Query: 1 EPTTLHEAKVSPEWPQWRGALKREMDGQITRGVWKVVDRPKGKTVLGTKTVFKRKVGRDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSTRMALAVMGLLDWEGRQLDVE 345
EP T EA S E PQW+ A+K E+D + W++VD P G LG + +FKRK+ DG ++KYK R V KGFRQ +G+ Y ++ SP +S R+ LA+ L + E Q+DV+
Sbjct: 135 EPQTYREAVTSSEGPQWKEAIKNEIDSILQNHTWELVDLPPGCKPLGYRWIFKRKMKADGSIDKYKARLVIKGFRQKEGLDYFDTYSPVTRITSIRLVLAIAALRNLEVHQMDVK 249 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig116.62.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig116.62.1 >prot_A-nodosum_M_contig116.62.1 ID=prot_A-nodosum_M_contig116.62.1|Name=mRNA_A-nodosum_M_contig116.62.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=116bp EPTTLHEAKVSPEWPQWRGALKREMDGQITRGVWKVVDRPKGKTVLGTKTback to top mRNA from alignment at A-nodosum_M_contig116:824738..825085- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig116.62.1 ID=mRNA_A-nodosum_M_contig116.62.1|Name=mRNA_A-nodosum_M_contig116.62.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=348bp|location=Sequence derived from alignment at A-nodosum_M_contig116:824738..825085- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig116:824738..825085- >mRNA_A-nodosum_M_contig116.62.1 ID=mRNA_A-nodosum_M_contig116.62.1|Name=mRNA_A-nodosum_M_contig116.62.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=348bp|location=Sequence derived from alignment at A-nodosum_M_contig116:824738..825085- (Ascophyllum nodosum dioecious)back to top |