mRNA_A-nodosum_M_contig116.62.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig116.62.1
Unique NamemRNA_A-nodosum_M_contig116.62.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig116.62.1 vs. uniprot
Match: A0A1R3JQF5_COCAP (Uncharacterized protein n=1 Tax=Corchorus capsularis TaxID=210143 RepID=A0A1R3JQF5_COCAP)

HSP 1 Score: 105 bits (263), Expect = 2.520e-24
Identity = 55/115 (47.83%), Postives = 68/115 (59.13%), Query Frame = 1
Query:    1 EPTTLHEAKVSPEWPQWRGALKREMDGQITRGVWKVVDRPKGKTVLGTKTVFKRKVGRDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSTRMALAVMGLLDWEGRQLDVE 345
            EPTT  EA   PE  +W  A+K EMD      VW +VD PKG   +G K +FK+K   DG V  YK RFVAKGFRQI G+ Y E+ SP     S R+ LA+    D+E  Q+DV+
Sbjct:  397 EPTTYQEAVAGPESEKWLEAMKSEMDSMYANQVWTLVDPPKGIKPIGCKWLFKKKTDMDGNVHTYKGRFVAKGFRQIHGVDYDETFSPVAMLKSIRILLAIAAFYDYEIWQMDVK 511          
BLAST of mRNA_A-nodosum_M_contig116.62.1 vs. uniprot
Match: A0A8J5YBS1_9ROSI (Uncharacterized protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5YBS1_9ROSI)

HSP 1 Score: 105 bits (263), Expect = 3.450e-24
Identity = 55/115 (47.83%), Postives = 71/115 (61.74%), Query Frame = 1
Query:    1 EPTTLHEAKVSPEWPQWRGALKREMDGQITRGVWKVVDRPKGKTVLGTKTVFKRKVGRDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSTRMALAVMGLLDWEGRQLDVE 345
            EP T  EA  SPE  +W  AL+ EMD      VW +VD PKG   +G K VFK+K+  DG V+ YK R VAKGFRQI G++Y E+ SP     S R++LA+    D+E  Q+DV+
Sbjct:  445 EPRTYQEAVASPESEKWLEALRSEMDSMYENQVWTLVDPPKGVKPIGCKWVFKKKIDMDGNVQTYKGRLVAKGFRQIHGVNYDETFSPVAMFKSIRISLAIAAFHDYEIWQMDVK 559          
BLAST of mRNA_A-nodosum_M_contig116.62.1 vs. uniprot
Match: UPI0015A81C6A (uncharacterized mitochondrial protein AtMg00820-like n=1 Tax=Stegodyphus dumicola TaxID=202533 RepID=UPI0015A81C6A)

HSP 1 Score: 96.3 bits (238), Expect = 5.010e-23
Identity = 47/112 (41.96%), Postives = 70/112 (62.50%), Query Frame = 1
Query:    1 EPTTLHEAKVSPEWPQWRGALKREMDGQITRGVWKVVDRPKGKTVLGTKTVFKRKVGRDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSTRMALAVMGLLDWEGRQL 336
            +P TL EA  SP+  +W+ A++ E++       W +V RP+G+ V+  K VFKRK+ +DG+VE+YK R VA+G+ Q++GI Y+E+ SP     S R  LA     DW+  QL
Sbjct:   30 DPETLEEALTSPDAEKWKLAMEEELENLKRNETWDIVPRPEGRKVVKCKWVFKRKLNKDGQVERYKARLVARGYTQVEGIDYKETFSPVIKTKSIRTLLAFSVEQDWQVHQL 141          
BLAST of mRNA_A-nodosum_M_contig116.62.1 vs. uniprot
Match: A0A2I0J8X0_PUNGR (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Punica granatum TaxID=22663 RepID=A0A2I0J8X0_PUNGR)

HSP 1 Score: 99.4 bits (246), Expect = 1.240e-22
Identity = 50/115 (43.48%), Postives = 70/115 (60.87%), Query Frame = 1
Query:    1 EPTTLHEAKVSPEWPQWRGALKREMDGQITRGVWKVVDRPKGKTVLGTKTVFKRKVGRDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSTRMALAVMGLLDWEGRQLDVE 345
            EPTT  EA + P+  +W  A++ EM+   T  VW +VD P+G  ++G K VFK+K   DG V  +K R VAKGFRQ+ G+ Y E+ SP     S R+ LA+    D+E  Q+DV+
Sbjct:   71 EPTTYAEAVIGPDSEKWLVAMRSEMESMYTNQVWTLVDPPEGAKLIGYKWVFKKKTDMDGNVITFKRRLVAKGFRQVHGVDYDETFSPVAMLKSIRILLAIAAYYDYEIWQMDVK 185          
BLAST of mRNA_A-nodosum_M_contig116.62.1 vs. uniprot
Match: A0A5N6PKD3_9ASTR (Integrase catalytic domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6PKD3_9ASTR)

HSP 1 Score: 100 bits (250), Expect = 1.940e-22
Identity = 50/115 (43.48%), Postives = 72/115 (62.61%), Query Frame = 1
Query:    1 EPTTLHEAKVSPEWPQWRGALKREMDGQITRGVWKVVDRPKGKTVLGTKTVFKRKVGRDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSTRMALAVMGLLDWEGRQLDVE 345
            EP T  EA  S E PQW+ A+K E+D  +   +W++VD P G   LG + +FKRK+  DG ++KYK R V KGFRQ +G+ Y ++ SP    +S R+ LA+  L + E  Q+DV+
Sbjct:  291 EPQTYREAVTSSEGPQWKEAIKNEIDSILQNHIWELVDLPPGCKPLGYRWIFKRKMKADGSIDKYKARLVIKGFRQKEGLDYFDTYSPVTRITSIRLVLAIAALRNLEVHQMDVK 405          
BLAST of mRNA_A-nodosum_M_contig116.62.1 vs. uniprot
Match: A0A5N6PND6_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6PND6_9ASTR)

HSP 1 Score: 99.0 bits (245), Expect = 2.370e-22
Identity = 49/115 (42.61%), Postives = 71/115 (61.74%), Query Frame = 1
Query:    1 EPTTLHEAKVSPEWPQWRGALKREMDGQITRGVWKVVDRPKGKTVLGTKTVFKRKVGRDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSTRMALAVMGLLDWEGRQLDVE 345
            EP T  +A  S E PQW+ A+K E+D  +    W++VD P G   LG + +FKRK+  DG ++KYK R V KGFRQ +G+ Y ++ SP    +S R+ LA+  L + E  Q+DV+
Sbjct:   70 EPQTYRDAVTSSEGPQWKEAIKNEIDSILQNHTWELVDLPPGCKPLGYRWIFKRKMKADGSIDKYKARLVIKGFRQKEGVDYFDTYSPVTRITSIRLVLAIAALRNLEVHQMDVK 184          
BLAST of mRNA_A-nodosum_M_contig116.62.1 vs. uniprot
Match: A0A5N6P275_9ASTR (Integrase catalytic domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6P275_9ASTR)

HSP 1 Score: 100 bits (248), Expect = 2.680e-22
Identity = 50/115 (43.48%), Postives = 71/115 (61.74%), Query Frame = 1
Query:    1 EPTTLHEAKVSPEWPQWRGALKREMDGQITRGVWKVVDRPKGKTVLGTKTVFKRKVGRDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSTRMALAVMGLLDWEGRQLDVE 345
            EP T  +A  S E PQW+ A+K E+D  +    W++VD P G   LG + +FKRK+  DG ++KYK R V KGFRQ +G+ Y +S SP    +S R+ LA+  L + E  Q+DV+
Sbjct:  284 EPQTYRDAVTSSEGPQWKEAIKNEIDSILQNHTWELVDLPPGCKPLGYRWIFKRKMKADGSIDKYKARLVIKGFRQKEGVDYFDSYSPVTRITSIRLVLAIAALRNLEVHQMDVK 398          
BLAST of mRNA_A-nodosum_M_contig116.62.1 vs. uniprot
Match: Q7XLR4_ORYSJ (OSJNBb0093G06.7 protein n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q7XLR4_ORYSJ)

HSP 1 Score: 100 bits (248), Expect = 3.660e-22
Identity = 50/115 (43.48%), Postives = 68/115 (59.13%), Query Frame = 1
Query:    1 EPTTLHEAKVSPEWPQWRGALKREMDGQITRGVWKVVDRPKGKTVLGTKTVFKRKVGRDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSTRMALAVMGLLDWEGRQLDVE 345
            EPTT  E  V P+  +W GA+K E++      VW +VD P G   +  K VFK+K+  DG V  YK + VAKGFRQI+G+ Y E+ SP     S R+ LA+    D+E  Q+DV+
Sbjct:  677 EPTTYEETMVGPDSEKWLGAMKSEIESMHVNQVWNLVDPPDGVKAIECKWVFKKKIDIDGNVHMYKAQLVAKGFRQIQGVDYDETFSPIAMLKSIRIVLAIAAYFDYEIWQMDVK 791          
BLAST of mRNA_A-nodosum_M_contig116.62.1 vs. uniprot
Match: A0A5N6NZH6_9ASTR (Integrase catalytic domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6NZH6_9ASTR)

HSP 1 Score: 100 bits (248), Expect = 3.750e-22
Identity = 50/115 (43.48%), Postives = 71/115 (61.74%), Query Frame = 1
Query:    1 EPTTLHEAKVSPEWPQWRGALKREMDGQITRGVWKVVDRPKGKTVLGTKTVFKRKVGRDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSTRMALAVMGLLDWEGRQLDVE 345
            EP T  EA  S E PQW+ A+K E+D  +   +W++VD P G   LG + +FKRK+  DG ++KYK R V KGFRQ +G  Y ++ SP    +S R+ LA+  L + E  Q+DV+
Sbjct:  388 EPQTYREAVTSSEGPQWKEAIKNEIDSILQNHIWELVDLPPGCKPLGYRWIFKRKMKADGSIDKYKARLVIKGFRQKQGFDYFDTYSPVTRITSIRLVLAIAALRNLEVHQMDVK 502          
BLAST of mRNA_A-nodosum_M_contig116.62.1 vs. uniprot
Match: A0A5N6NFL8_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6NFL8_9ASTR)

HSP 1 Score: 99.8 bits (247), Expect = 4.350e-22
Identity = 50/115 (43.48%), Postives = 71/115 (61.74%), Query Frame = 1
Query:    1 EPTTLHEAKVSPEWPQWRGALKREMDGQITRGVWKVVDRPKGKTVLGTKTVFKRKVGRDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSTRMALAVMGLLDWEGRQLDVE 345
            EP T  EA  S E PQW+ A+K E+D  +    W++VD P G   LG + +FKRK+  DG ++KYK R V KGFRQ +G+ Y ++ SP    +S R+ LA+  L + E  Q+DV+
Sbjct:  135 EPQTYREAVTSSEGPQWKEAIKNEIDSILQNHTWELVDLPPGCKPLGYRWIFKRKMKADGSIDKYKARLVIKGFRQKEGLDYFDTYSPVTRITSIRLVLAIAALRNLEVHQMDVK 249          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig116.62.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1R3JQF5_COCAP2.520e-2447.83Uncharacterized protein n=1 Tax=Corchorus capsular... [more]
A0A8J5YBS1_9ROSI3.450e-2447.83Uncharacterized protein n=1 Tax=Gossypium anomalum... [more]
UPI0015A81C6A5.010e-2341.96uncharacterized mitochondrial protein AtMg00820-li... [more]
A0A2I0J8X0_PUNGR1.240e-2243.48Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5N6PKD3_9ASTR1.940e-2243.48Integrase catalytic domain-containing protein n=1 ... [more]
A0A5N6PND6_9ASTR2.370e-2242.61Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5N6P275_9ASTR2.680e-2243.48Integrase catalytic domain-containing protein n=1 ... [more]
Q7XLR4_ORYSJ3.660e-2243.48OSJNBb0093G06.7 protein n=1 Tax=Oryza sativa subsp... [more]
A0A5N6NZH6_9ASTR3.750e-2243.48Integrase catalytic domain-containing protein n=1 ... [more]
A0A5N6NFL8_9ASTR4.350e-2243.48Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig116contigA-nodosum_M_contig116:824738..825085 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog164328.Phyra87173
Model size348
Max annot lvl164328.Phyra87173|-
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.32e-21
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3Q8Z1@4776|Peronosporales
Descriptiontransposition, RNA-mediated
Cds size348
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866565.044383-CDS-A-nodosum_M_contig116:824737..8250851680866565.044383-CDS-A-nodosum_M_contig116:824737..825085Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig116 824738..825085 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig116.62.1prot_A-nodosum_M_contig116.62.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig116 824738..825085 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig116.62.1

>prot_A-nodosum_M_contig116.62.1 ID=prot_A-nodosum_M_contig116.62.1|Name=mRNA_A-nodosum_M_contig116.62.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=116bp
EPTTLHEAKVSPEWPQWRGALKREMDGQITRGVWKVVDRPKGKTVLGTKT
VFKRKVGRDGRVEKYKCRFVAKGFRQIKGIHYQESSSPTPTQSSTRMALA
VMGLLDWEGRQLDVEM
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mRNA from alignment at A-nodosum_M_contig116:824738..825085-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig116.62.1 ID=mRNA_A-nodosum_M_contig116.62.1|Name=mRNA_A-nodosum_M_contig116.62.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=348bp|location=Sequence derived from alignment at A-nodosum_M_contig116:824738..825085- (Ascophyllum nodosum dioecious)
GAGCCTACCACCTTGCACGAGGCTAAGGTGTCCCCCGAGTGGCCGCAATG GCGCGGCGCGCTCAAGCGCGAGATGGACGGCCAGATTACGCGTGGTGTGT GGAAGGTCGTTGATCGACCCAAAGGAAAAACCGTACTCGGCACCAAGACC GTTTTTAAACGGAAGGTCGGCCGGGATGGTCGTGTAGAAAAGTACAAATG CCGCTTCGTGGCCAAGGGTTTCCGCCAGATCAAGGGGATTCATTACCAAG AGTCATCGTCGCCGACACCTACACAGTCGAGCACCCGGATGGCGCTGGCG GTGATGGGCCTGTTGGACTGGGAGGGGCGGCAGCTTGACGTAGAAATG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig116:824738..825085-

>mRNA_A-nodosum_M_contig116.62.1 ID=mRNA_A-nodosum_M_contig116.62.1|Name=mRNA_A-nodosum_M_contig116.62.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=348bp|location=Sequence derived from alignment at A-nodosum_M_contig116:824738..825085- (Ascophyllum nodosum dioecious)
GAGCCTACCACCTTGCACGAGGCTAAGGTGTCCCCCGAGTGGCCGCAATG
GCGCGGCGCGCTCAAGCGCGAGATGGACGGCCAGATTACGCGTGGTGTGT
GGAAGGTCGTTGATCGACCCAAAGGAAAAACCGTACTCGGCACCAAGACC
GTTTTTAAACGGAAGGTCGGCCGGGATGGTCGTGTAGAAAAGTACAAATG
CCGCTTCGTGGCCAAGGGTTTCCGCCAGATCAAGGGGATTCATTACCAAG
AGTCATCGTCGCCGACACCTACACAGTCGAGCACCCGGATGGCGCTGGCG
GTGATGGGCCTGTTGGACTGGGAGGGGCGGCAGCTTGACGTAGAAATG
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