mRNA_A-nodosum_M_contig116.4.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig116.4.1
Unique NamemRNA_A-nodosum_M_contig116.4.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig116.4.1 vs. uniprot
Match: A0A6H5JS96_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS96_9PHAE)

HSP 1 Score: 349 bits (896), Expect = 4.410e-116
Identity = 170/302 (56.29%), Postives = 225/302 (74.50%), Query Frame = 1
Query:    1 VCPCGVSVCFDPHLQGLRGQHIEWTGLDGGWYALVKDDEDDLQINVRTTAPLPTDFPDRQFITGVAVLSQGHSLIVEVKEPYTVDTQGCSDGVSPCLADGGLSISVDGELVDLLNGPTNDVHLP-GGIEVSSSNLPQECREFGGRRVWARMQKDMLRGRRQLSAAKTFEDWMLSFTN-MVAPEFCVTFVNNGDLFNVQSDQALLRIVTPTAVVRLSAGINHRRAGKTDRFGRDLPELDFWQMGVGVEGLSLLHESLSGLLGETARVVVDAEGNDVMEGAEALSGTIEDYRVSDAEGTDFALL 900
            VCP G +VC DPH+QGLRGQ I+W+G+DGGWY+L+KDD  D+ INVR TAPLP +FPDRQ +T +AVLS+GHS+++EV+ PYTV T GC +GVSPCLA+GGL I VD + VD L   +  V +  G + VSSSNLP EC++FGG R+WARM +DM+ GRR+L   ++ E+W+L + + M AP +C  ++   DL ++QSD A+ +I TPT  VRL+AG+N++  G+ +  GR LP+L+FWQMGVG++GL + + +LSGLLGETAR V D  G  VMEG +A  GTIEDYRVSDA    F LL
Sbjct:  104 VCPPGDAVCGDPHMQGLRGQRIDWSGVDGGWYSLIKDDNIDININVRLTAPLPDEFPDRQLMTSLAVLSKGHSVVIEVENPYTVVTNGCPEGVSPCLANGGLRIIVDSQQVDELLRFSRHVPVADGAMTVSSSNLPVECQQFGGDRIWARMYQDMIEGRRELHGDESLEEWILKYDHGMAAPGWCAKYIAENDLADLQSDHAIFKIQTPTVTVRLNAGVNYQGNGELNWDGRVLPDLEFWQMGVGMDGLDVDNPALSGLLGETARPVYDENGQVVMEGFDAFRGTIEDYRVSDALDVHFPLL 405          
BLAST of mRNA_A-nodosum_M_contig116.4.1 vs. uniprot
Match: D8LMW2_ECTSI (Imm upregulated 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMW2_ECTSI)

HSP 1 Score: 325 bits (834), Expect = 4.210e-108
Identity = 156/292 (53.42%), Postives = 216/292 (73.97%), Query Frame = 1
Query:   31 DPHLQGLRGQHIEWTGLDGGWYALVKDDEDDLQINVRTTAPLPTDFPDRQFITGVAVLSQGHSLIVEVKEPYTVDTQGCSDGVSPCLADGGLSISVDGELVDLLNGPTNDVHLPGG-IEVSSSNLPQECREFGGRRVWARMQKDMLRGRRQLSAAKTFEDWMLSFT-NMVAPEFCVTFVNNGDLFNVQSDQALLRIVTPTAVVRLSAGINHRRAGKTDRFGRDLPELDFWQMGVGVEGLSLLHESLSGLLGETARVVVDAEGNDVMEGAEALSGTIEDYRVSDAEGTDFALL 900
            DPH++GLRGQ I W+G+DGGWY+LVKDD  DL INVR TAPLP +FPDRQ +T +A++S+G+S+++EV+ PYT+ T GC +GVSPCLA+GGL I VDG+ VD L   +  + +  G + +S+SNLP ECR+FGG R+WARM +D+L  RRQL   ++ E+W+L +  NM A  +C  ++   DL ++Q++ A+ +I TPT  VRL+AG+N++  G+ +  GR LP+L+FWQM VG++GL + + +LSGLLGETAR V    G  VMEG++A  GT+EDYRVS A G  FALL
Sbjct:   15 DPHMRGLRGQRINWSGVDGGWYSLVKDDHADLSINVRVTAPLPDEFPDRQLMTSLAIMSEGYSVVIEVENPYTIVTGGCPEGVSPCLANGGLRIIVDGQEVDELLRFSRQMPVADGTMTMSASNLPVECRQFGGHRIWARMYQDILEDRRQLRGGESLEEWILRYDQNMPARRWCAKYIAENDLADLQANHAIFKIQTPTVTVRLNAGVNYQGDGELNWDGRVLPDLEFWQMDVGIDGLDVDNPALSGLLGETARPVYGENGEAVMEGSDAFRGTVEDYRVSSALGVHFALL 306          
BLAST of mRNA_A-nodosum_M_contig116.4.1 vs. uniprot
Match: A0A6H5JNZ2_9PHAE (VWFA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNZ2_9PHAE)

HSP 1 Score: 328 bits (842), Expect = 1.930e-104
Identity = 165/303 (54.46%), Postives = 218/303 (71.95%), Query Frame = 1
Query:    1 VCPCGVSVCFDPHLQGLRGQHIEWTGLDGGWYALVKDDEDDLQINVRTTAPLPTDFPDRQFITGVAVLSQGHSLIVEVKEPYTVD-TQGCSDGV-SPCLADGGLSISVDGELVDLLNGPTNDVHLPGGIEVSSSNLPQECREFGGRRVWARMQKDMLRGRRQLSAAKTFEDWMLSFTNMVAPEFCVTFVNNGDLFNVQSDQALLRIVTPTAVVRLSAGINHRRAGKTDRFGRDLPELDFWQMGVGVEGLSLLHESLSGLLGETARVVVDAEGNDVMEGAEALSGTIEDYRVSDAEGTDFALLH 903
            +CP G  +C DPH++GL GQ I+W G+DG WY+ VKD + DL++NVR TAPLP DFPDRQ +TG++V+S+GHSL++EV  PY+ D   GC DG  +PCLA+GGLS++VDGE    L  P     LPGGIEVS+ NLP +C +FGG ++WAR  + +L  RR+L A ++FEDW+LSFT+M A ++C  +++   L  VQS  A+ +IVTP  VVRL+ GI H+   + D  GR LP+LD WQM VG+ GLSL +E+L+G+LGETAR V D +G+ VM G +A  GT EDYRVS   G DFALLH
Sbjct:  394 ICPKGSHICDDPHMKGLLGQSIDWFGVDGEWYSFVKDPDMDLRVNVRLTAPLPDDFPDRQLVTGLSVISEGHSLVLEVTNPYSTDLNDGCPDGSPTPCLANGGLSVTVDGEKNVGLIHPIRGEILPGGIEVSADNLPVQCWQFGGHKIWARHYEAIL-ARRKLRA-QSFEDWVLSFTDMAAHDWCTEYISEKGLTGVQSSHAIYQIVTPAVVVRLNVGIGHQDGDEVDWDGRVLPDLDVWQMDVGLTGLSLENEALTGILGETARPVYDEDGHAVMAGDDAYRGTPEDYRVSGPLGMDFALLH 694          
BLAST of mRNA_A-nodosum_M_contig116.4.1 vs. uniprot
Match: A0A6H5JP35_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP35_9PHAE)

HSP 1 Score: 292 bits (748), Expect = 1.540e-94
Identity = 154/299 (51.51%), Postives = 212/299 (70.90%), Query Frame = 1
Query:   25 CFDPHLQGLRGQHIEWTGLDGGWYALVKDDEDDLQINVRTTAPLPTDFPDRQFITGVAVLSQGHSLIVEVKEPYTVDTQG-CSDGV-SPCLADGGLSISVDGELV----DLLNGPTNDVHLPGGIEVSSSNLPQECREFGGRRVWARMQKD-MLRGRRQLSAAKTFEDWMLSFTNMVAPEFCVTFVNNGDLFNVQSDQALLRIVTPTAVVRLSAGINHRRAGKTDRFGRDLPELDFWQMGVGVEGLSLLHESLSGLLGETARVVVDAEGNDVMEGAEALSGTIEDYRVSDAEGTDFALL 900
            C D +   L GQ I+W G+DGGWY+LV+D + DL +NVR TAP P +FPDRQ +TG++V++ GHSL++EV +PY  DT G C DG  +PCLA+GGLS+ VDGE       LL+    D  LPGGI+VS++NLP +C +FGG ++ AR   + ++ GRR L  ++TFE+W+LSF +M A ++C  ++ + DL +VQS QA+ +I+TP  VVR + GI H+  G  +  GR +P+LD W+M VG+ GLSL +E+L+G+LGETAR V+D  G  VM+G +A  GT EDYRVS A GTDFALL
Sbjct:   54 CTDTYAV-LLGQSIDWFGIDGGWYSLVQDPDIDLNVNVRLTAPPPEEFPDRQLVTGLSVMAGGHSLVIEVTKPYDTDTAGGCPDGAPAPCLANGGLSVIVDGEKEADDSPLLH-TIRDETLPGGIQVSAANLPVQCWQFGGDKISARHYANTIMEGRRHL-LSETFEEWVLSFQHMAAHDWCTEYIAHKDLSDVQSAQAIYQIITPEVVVRFNVGIGHQTGGHVEMDGRIVPDLDVWEMDVGLAGLSLENETLTGILGETARPVLDEHGRAVMKGNKAYRGTPEDYRVSGALGTDFALL 349          
BLAST of mRNA_A-nodosum_M_contig116.4.1 vs. uniprot
Match: A0A6H5JP37_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP37_9PHAE)

HSP 1 Score: 287 bits (734), Expect = 3.650e-93
Identity = 143/291 (49.14%), Postives = 195/291 (67.01%), Query Frame = 1
Query:   31 DPHLQGLRGQHIEWTGLDGGWYALVKDDEDDLQINVRTTAPLPTDFPDRQFITGVAVLSQGHSLIVEVKEPYTVDTQGCSDGVSPCLADGGLSISVDGELVDLLNGPTNDVHLPGGIEVSSSNLPQECREFGGRRVWARMQKDMLRGRRQLSAAKTFEDWMLSFT-NMVAPEFCVTFVNNGDLFNVQSDQALLRIVTPTAVVRLSAGINHRRAGKTDRFGRDLPELDFWQMGVGVEGLSLLHESLSGLLGETARVVVDAEGNDVMEGAEALSGTIEDYRVSDAEGTDFALL 900
            DPH++GL GQ + W+G DGGWY+L+KDD  DL INVR TAPLP +FPDRQ +T +A++S+G+S+++EVK PYT DT GC + VSPC A+GGL I VDG  VD L                S  +P      GG+R+WARM +D+L GRRQL   ++ E+W+L +  NM A  +C  ++   DL ++Q++ A+ +I TPT  VRL+AG+N++  G+ +  GR LP+L+FWQ+ VG++GL +   +LSGL GETA  V D  G  VMEG +A  G +EDYRVS A G  FALL
Sbjct:   20 DPHMRGLLGQRVNWSGFDGGWYSLIKDDNADLHINVRVTAPLPDEFPDRQLMTSLAIMSEGYSVVIEVKNPYTTDTGGCPEDVSPCHANGGLRIIVDGHEVDELL-------------RFSRQMP------GGKRIWARMYQDILEGRRQLRGGESLEEWILRYDQNMPARTWCAKYIAENDLADLQANHAIFKIQTPTVTVRLNAGVNYQSNGELNWDGRVLPDLEFWQIDVGIDGLDVDKPALSGLFGETACPVYDENGKAVMEGYDAFRGAVEDYRVSSALGVHFALL 291          
BLAST of mRNA_A-nodosum_M_contig116.4.1 vs. uniprot
Match: A0A6H5KYD0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYD0_9PHAE)

HSP 1 Score: 240 bits (612), Expect = 1.640e-74
Identity = 134/303 (44.22%), Postives = 179/303 (59.08%), Query Frame = 1
Query:   19 SVCFDPHLQGLRGQHIEWTGLDGGWYALVKDDEDDLQINVRTTAPLPTDFPDRQFITGVAVLS-QGHSLIVEVKEPYTVDTQGCSDGVSPCLADGGLSISVDGELVDLLNGPTNDVHLPGG-IEVSSSNLPQECREFGGRRVWARMQKDM--LRGRRQLSAAKTFEDWMLSFTNMVAPEFCVTFVNN---GDLFNVQSDQALLRIVTPTAVVRLSAGINHRRAG-KTDRFGRDLPELDFWQMGVGVEGLSLLHESLSGLLGETARVVVDAEGNDVMEGAEALSGTIEDYRVSDAEGTDFALLH 903
             V  D H+ GL GQ I+W G D GWY L+ + E   Q+N R TAP+P +FP RQ ++GV++ S +G SL+VEVK P T +T+GCS   +PCLA+G L I VDG+    L  P  ++ LPGG + VSS+NLP ECR FGG R+WA     M    GRR L     F DW+L    M AP +C  F        L +VQS++A+LR+ T    VR+  G+N++ +   +D     +PELDFWQ  +  E L    E L G+LG+TAR V+D +G  +  G EAL G +E  RVS   G DF  +H
Sbjct:    6 QVSGDSHMVGLLGQEIDWYGEDSGWYCLLVNSE--FQVNARVTAPMPDEFPTRQLVSGVSIRSAEGPSLVVEVKNPITTETEGCSSTSAPCLAEGALRILVDGDESHALQSPVENLVLPGGDLVVSSANLPAECRPFGGDRIWAAQFAAMNDASGRRSLRGHTPFADWVLEADTMAAPGWCALFAREQRLSGLSSVQSNRAILRVETGGVTVRVDVGVNYQDSVLSSDGNAVLVPELDFWQTDIAFEELRPSGE-LGGMLGDTARYVIDDDGKPITSGMEALRGPVETCRVSGPLGVDFEQMH 305          
BLAST of mRNA_A-nodosum_M_contig116.4.1 vs. uniprot
Match: A0A6H5JW46_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW46_9PHAE)

HSP 1 Score: 196 bits (499), Expect = 1.010e-56
Identity = 118/298 (39.60%), Postives = 180/298 (60.40%), Query Frame = 1
Query:   13 GVSVCFDPHLQGLRGQHIEWTGLDGGWYALVKDDEDDLQINVRTTAPLPTDFPDRQFITGVAVLS-----QGHSLIVEVKEPYTVDTQGCSDGVSPCLADGGLSISVDGELVDLLNGPTNDVHLPGGIEVSSSNLPQECREFGGRRVWARMQKDMLRGRRQLSAAKTFEDWMLSFTNMVAPEFCVTFVNN-----GDLFNVQSDQALLRIVTPTAVVRLSAGINHRRAGK--TDRFGRDLPELDFWQMGVGVEGLSLLHESLSGLLGETARVVVDAEGNDVMEGAEALSGTIEDYRVS 870
            G   C DPH+ G  GQ  ++TG DGG+YAL+ D  + + +N+R T+P+P+  P+  +ITG+++L+     + HS+++EVK P+ +++  C  GVSPCLADG L + ++G+  + L+ P   V L  G+ V++ NLP ECR FG    W R + +  R  R L   ++  DW+L        + C+ +V       G LF +QS+ A  +IVTPTA VRLS G  H+ A +  T+RF  DLP+   WQM +G++   + + S +G+LGET+    DA G D+M G EA+ G+ EDYRV+
Sbjct:   84 GPRACGDPHMTGFLGQKFDFTGEDGGYYALISDFPN-MHMNMRVTSPVPS-LPEITYITGLSLLTTDANGEVHSIVIEVKNPHDIES-ACPAGVSPCLADGSLRVMLNGK--EELSAP-GSVALADGVIVTAVNLPGECRSFGFEHYWERKKLENARHGRHLGE-QSMGDWLLGDPTATNMDECMEYVAQAEGQAGGLFALQSEHASFQIVTPTATVRLSHGRLHQIATRDPTNRF--DLPDHTTWQMNMGIDHNEVSY-SATGILGETSTPTKDAYGQDIMTGMEAIRGSEEDYRVA 371          
BLAST of mRNA_A-nodosum_M_contig116.4.1 vs. uniprot
Match: D7G544_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G544_ECTSI)

HSP 1 Score: 178 bits (452), Expect = 2.460e-48
Identity = 102/254 (40.16%), Postives = 154/254 (60.63%), Query Frame = 1
Query:   10 CGVSVCFDPHLQGLRGQHIEWTGLDGGWYALVKDDEDDLQINVRTTAPLPTDFPDRQFITGVAVLSQG-HSLIVEVKEPYTV--DTQGCSDGV--SPCLADGGLSISVDGELVDLLNGPTNDVHLPGGIEVSSSNLPQECREFGGRRVWARM--QKDMLRGRRQLSAAKTFEDWMLSFTNMVAPEFCVTFVN--NGD---LFNVQSDQALLRIVTPTAVVRLSAGINHRRAGKTDRFGRDLPELDFWQMGVGVE 735
            C   +  DPHL GLRGQH +W G DGGWYA +    D LQ+N+R T+ LP  FP+RQ +TGVA++++G H++  ++ +P  +     G  D V  +PCL +GGL I+VDG   + L G   +    G I +++ NLP EC+ FG   +W  +  ++ +  G R L +A+T  DW+++ + M+AP +CV ++   NGD   L +++S  A+LRI TP   +R++ GIN  R  +T + GR +P   FWQM V VE
Sbjct:  238 CTPRIWDDPHLTGLRGQHFDWYGQDGGWYAFLST-PDQLQMNLRVTSHLPATFPERQLVTGVALVTEGGHTITADIVDPLDLAPTCHGTVDAVGSAPCLVNGGLRITVDGR--EQLQG-AGEYDFDGDIHITAVNLPLECQRFGDYMMWGDLDVEQRLRGGSRSLRSAETVFDWLVADSVMIAPAWCVKYLKELNGDVTALASMKSSHAVLRIGTPNLSLRVNVGINTERE-QTLQDGRVVPTASFWQMDVRVE 486          
BLAST of mRNA_A-nodosum_M_contig116.4.1 vs. uniprot
Match: A0A6H5K7V7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7V7_9PHAE)

HSP 1 Score: 174 bits (442), Expect = 9.660e-48
Identity = 106/312 (33.97%), Postives = 166/312 (53.21%), Query Frame = 1
Query:   19 SVCFDPHLQGLRGQHIEWTGLDGGWYALVKDDEDDLQINVRTTAPLPTDFPDRQFITGVAVLSQG-----HSLIVEVKEPYTVDTQGCSDGVSPCLADGGLSISVDGELVDLLNGPTNDVHLPGGIEVSSSNLPQECREFGGRRVWARMQKDMLRGRRQLS---AAKTFEDWMLSFTNMVAPEFCVTFV------NNGDLFNVQSDQALLRIVTPTAVVRLSAGINHRRAGK--TDRFGRDLPELDFWQMGVGVEGLSLLHESLSGLLGETARVVVDAEGNDVMEGAEALSGTIEDYRVSDAEGTDFALLHN 906
              C DPH+ G  GQ  ++ G DG WYA+V D   DL++N+R T+P+P + P+  +ITG+ + ++      HSL++ V +P+++D+  C    S CLADG L++ +DG++  L  G   +  L  G+ +S+ NLP  CR FG  + W R + + +   R+L+     +   DW+L          C  +V          LF   S+    +IVTP   +RLS G  H+ A +  TDRF  D+P+   WQM +  + + L  ++ +G+LGET +  +DA GN +MEG  A+ G+ EDY V       F    N
Sbjct:  136 GACGDPHMTGFLGQKFDFVGQDGEWYAVVSD-MPDLEVNMRVTSPVPAE-PEITYITGLGIKTRDIEGLDHSLVITVTDPHSLDS-ACPVQGSTCLADGALTVELDGDVALLSPG---EAELGPGVAISAVNLPGACRSFGFEKYWERKKAEYVASGRRLNNDLQMQEMSDWILGDPTATNMAECTEYVLGATVDGQAGLFEYDSEHTSFQIVTPKGTIRLSHGRLHQLAMRDPTDRF--DIPDHLTWQMNLAFDNVDLAVDA-TGILGETQQHTLDANGNPIMEGMAAIRGSQEDYLVDGPLDNVFVAARN 438          
BLAST of mRNA_A-nodosum_M_contig116.4.1 vs. uniprot
Match: A0A6H5KRS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRS2_9PHAE)

HSP 1 Score: 168 bits (425), Expect = 1.070e-45
Identity = 107/302 (35.43%), Postives = 168/302 (55.63%), Query Frame = 1
Query:    7 PCGVSVCFDPHLQGLRGQHIEWTGLDGGWYALVKDDEDDLQINVRTTAPLPTDFPDRQFITGVAVLSQG-----HSLIVEVKEPYTVDTQGCSDGVSPCLADGGLSISVDGELVDLLNGPTNDVHLPGGIEVSSSNLPQECREFGGRRVWARMQKDMLR--GRRQLSAAKTFEDWMLSFTNMVAPEFCVTFV-------NNGDLFNVQSDQALLRIVTPTAVVRLSAGINHRRAGKTDRFGRDLPELDFWQMGVGVEGLSLLHESLSGLLGETARVVVDAEGNDVMEGAEALSGTIEDYRVS 870
            P   + C DPH+ G  GQ  ++TG DG WY L+ D    + +N+R TAP+P+  PD  +ITG+++++Q      HS+++ VK+P+++++  C  GV+PCLA+G LS+S+DG+  + L+ P   V +   ++VS  NLP  CR FG  + W R + +  +  GRR  S  +   DW+L          C  +V        +G LF  +S+ A  +IV P A VRLS G  H+ A    ++G  LP+   WQM + ++  S+      G+LGET     DA+G  VM G E++ GT E+  ++
Sbjct:   49 PTDPTACGDPHMTGFHGQKFDFTGDDGEWYCLISD-LPSMNLNMRVTAPVPSR-PDITYITGISLITQDGNGLDHSVVITVKDPHSLESS-CPAGVTPCLANGALSVSLDGK--EALSAP-GVVEMAPNMKVSVVNLPGACRSFGFEKYWERKKLEYAQAGGRRLSSKDQDMGDWILGDPTATNMAECTEYVARHVVEGGDGGLFAHKSEHASFQIVMPIATVRLSHGRLHQIA----QYG--LPDHSTWQMNLAIDSDSV-GVGAQGVLGETLVPTRDADGEYVMHGMESIRGTQEECELA 337          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig116.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A6H5JS96_9PHAE4.410e-11656.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LMW2_ECTSI4.210e-10853.42Imm upregulated 3 n=1 Tax=Ectocarpus siliculosus T... [more]
A0A6H5JNZ2_9PHAE1.930e-10454.46VWFA domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JP35_9PHAE1.540e-9451.51Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JP37_9PHAE3.650e-9349.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KYD0_9PHAE1.640e-7444.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JW46_9PHAE1.010e-5639.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G544_ECTSI2.460e-4840.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K7V7_9PHAE9.660e-4833.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KRS2_9PHAE1.070e-4535.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig116contigA-nodosum_M_contig116:79991..80899 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog4641.GSMUA_Achr11P06920_001
PFAMsRoot_cap
Model size909
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue0.000241
EggNOG OGs28JQY@1|root,2QS4C@2759|Eukaryota,37PTE@33090|Viridiplantae,3G8NK@35493|Streptophyta,3M2T9@4447|Liliopsida
DescriptionRoot cap
Cds size909
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866561.176932-CDS-A-nodosum_M_contig116:79990..808991680866561.176932-CDS-A-nodosum_M_contig116:79990..80899Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig116 79991..80899 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig116.4.1prot_A-nodosum_M_contig116.4.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig116 79991..80899 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig116.4.1

>prot_A-nodosum_M_contig116.4.1 ID=prot_A-nodosum_M_contig116.4.1|Name=mRNA_A-nodosum_M_contig116.4.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=303bp
VCPCGVSVCFDPHLQGLRGQHIEWTGLDGGWYALVKDDEDDLQINVRTTA
PLPTDFPDRQFITGVAVLSQGHSLIVEVKEPYTVDTQGCSDGVSPCLADG
GLSISVDGELVDLLNGPTNDVHLPGGIEVSSSNLPQECREFGGRRVWARM
QKDMLRGRRQLSAAKTFEDWMLSFTNMVAPEFCVTFVNNGDLFNVQSDQA
LLRIVTPTAVVRLSAGINHRRAGKTDRFGRDLPELDFWQMGVGVEGLSLL
HESLSGLLGETARVVVDAEGNDVMEGAEALSGTIEDYRVSDAEGTDFALL
HN*
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mRNA from alignment at A-nodosum_M_contig116:79991..80899+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig116.4.1 ID=mRNA_A-nodosum_M_contig116.4.1|Name=mRNA_A-nodosum_M_contig116.4.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=909bp|location=Sequence derived from alignment at A-nodosum_M_contig116:79991..80899+ (Ascophyllum nodosum dioecious)
GTGTGTCCCTGTGGAGTCTCCGTGTGCTTCGACCCGCACCTGCAAGGCCT TCGCGGACAGCATATCGAGTGGACTGGGCTCGACGGTGGCTGGTACGCCC TCGTGAAGGATGACGAAGATGACCTTCAGATCAACGTGCGCACCACCGCG CCTCTGCCTACCGACTTCCCCGACCGTCAGTTCATCACGGGTGTGGCCGT TCTTTCGCAGGGACACTCTCTCATCGTTGAGGTAAAGGAACCCTACACCG TCGACACTCAGGGCTGCTCCGACGGCGTCTCACCCTGCCTGGCTGACGGT GGCCTGAGTATCTCTGTAGACGGAGAGCTGGTTGACCTCCTCAACGGCCC TACCAACGACGTACACCTTCCGGGTGGCATTGAGGTGTCCTCGTCCAACC TGCCCCAAGAGTGCCGCGAGTTCGGTGGTAGGAGGGTATGGGCACGTATG CAAAAGGACATGCTGCGAGGCCGCCGCCAGCTCTCTGCTGCCAAGACATT CGAGGACTGGATGTTGAGCTTCACCAACATGGTGGCGCCGGAATTTTGCG TCACGTTCGTCAACAACGGCGACCTTTTCAACGTGCAGTCCGATCAGGCC CTTCTCAGGATCGTGACCCCCACGGCCGTTGTGCGCCTCTCCGCCGGCAT CAACCACCGTCGTGCCGGCAAGACGGACCGGTTCGGTCGTGACCTCCCGG AGCTTGACTTCTGGCAGATGGGTGTTGGTGTAGAGGGCTTGTCTCTTCTG CATGAGTCTCTTTCCGGCCTCCTGGGCGAGACTGCGCGCGTGGTTGTGGA CGCCGAGGGTAATGATGTGATGGAAGGAGCTGAGGCACTCTCCGGCACCA TCGAAGATTACCGCGTGTCCGACGCCGAGGGCACTGACTTTGCTCTTCTC CACAACTAA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig116:79991..80899+

>mRNA_A-nodosum_M_contig116.4.1 ID=mRNA_A-nodosum_M_contig116.4.1|Name=mRNA_A-nodosum_M_contig116.4.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=909bp|location=Sequence derived from alignment at A-nodosum_M_contig116:79991..80899+ (Ascophyllum nodosum dioecious)
GTGTGTCCCTGTGGAGTCTCCGTGTGCTTCGACCCGCACCTGCAAGGCCT
TCGCGGACAGCATATCGAGTGGACTGGGCTCGACGGTGGCTGGTACGCCC
TCGTGAAGGATGACGAAGATGACCTTCAGATCAACGTGCGCACCACCGCG
CCTCTGCCTACCGACTTCCCCGACCGTCAGTTCATCACGGGTGTGGCCGT
TCTTTCGCAGGGACACTCTCTCATCGTTGAGGTAAAGGAACCCTACACCG
TCGACACTCAGGGCTGCTCCGACGGCGTCTCACCCTGCCTGGCTGACGGT
GGCCTGAGTATCTCTGTAGACGGAGAGCTGGTTGACCTCCTCAACGGCCC
TACCAACGACGTACACCTTCCGGGTGGCATTGAGGTGTCCTCGTCCAACC
TGCCCCAAGAGTGCCGCGAGTTCGGTGGTAGGAGGGTATGGGCACGTATG
CAAAAGGACATGCTGCGAGGCCGCCGCCAGCTCTCTGCTGCCAAGACATT
CGAGGACTGGATGTTGAGCTTCACCAACATGGTGGCGCCGGAATTTTGCG
TCACGTTCGTCAACAACGGCGACCTTTTCAACGTGCAGTCCGATCAGGCC
CTTCTCAGGATCGTGACCCCCACGGCCGTTGTGCGCCTCTCCGCCGGCAT
CAACCACCGTCGTGCCGGCAAGACGGACCGGTTCGGTCGTGACCTCCCGG
AGCTTGACTTCTGGCAGATGGGTGTTGGTGTAGAGGGCTTGTCTCTTCTG
CATGAGTCTCTTTCCGGCCTCCTGGGCGAGACTGCGCGCGTGGTTGTGGA
CGCCGAGGGTAATGATGTGATGGAAGGAGCTGAGGCACTCTCCGGCACCA
TCGAAGATTACCGCGTGTCCGACGCCGAGGGCACTGACTTTGCTCTTCTC
CACAACTAA
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