mRNA_A-nodosum_M_contig116.16.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig116.16.1
Unique NamemRNA_A-nodosum_M_contig116.16.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig116.16.1 vs. uniprot
Match: D8LGT9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGT9_ECTSI)

HSP 1 Score: 95.1 bits (235), Expect = 4.880e-21
Identity = 58/102 (56.86%), Postives = 65/102 (63.73%), Query Frame = 1
Query:    1 DFFEDCALPPRCIKQVVMLGAGMDTRGLRLRASIGTSVFEVDQALVLAAKRNTLQGTLAVSKA------FSEESLGGVCEARVIGVEADLGQTGWEEKLLDA 288
            DFFEDCA  PR IKQ+V LGAGMDTRGLRLRAS  T VFEVDQALVL  K   L    A  +       F E   GGV + RV+ VEADL   GW+ +L +A
Sbjct:  164 DFFEDCA-GPRGIKQIVSLGAGMDTRGLRLRASGDTKVFEVDQALVLRVKGALLTQAAAADEVAAALAGFRERRDGGVGQGRVVPVEADLSVEGWQGELFEA 264          
BLAST of mRNA_A-nodosum_M_contig116.16.1 vs. uniprot
Match: D7FXP3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXP3_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 4.150e-19
Identity = 55/102 (53.92%), Postives = 63/102 (61.76%), Query Frame = 1
Query:    1 DFFEDCALPPRCIKQVVMLGAGMDTRGLRLRASIGTSVFEVDQALVLAAKRNTLQGTLAVSKA------FSEESLGGVCEARVIGVEADLGQTGWEEKLLDA 288
            DFFEDCA  PR IKQ+V LGAGMDTRGLR RAS  T VFEVDQALVL  K   L    A  +       F E   GGV + RV+ V+A L   GW+ +L +A
Sbjct:   69 DFFEDCA-GPRGIKQIVSLGAGMDTRGLRRRASGDTKVFEVDQALVLRVKSALLTQAAAADEVAAALAGFRERRDGGVGQGRVVPVQAALSVEGWQGELFEA 169          
BLAST of mRNA_A-nodosum_M_contig116.16.1 vs. uniprot
Match: D7FXP1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXP1_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 5.380e-10
Identity = 39/80 (48.75%), Postives = 45/80 (56.25%), Query Frame = 1
Query:   67 MDTRGLRLRASIGTSVFEVDQALVLAAKRNTLQGTLAVSKA------FSEESLGGVCEARVIGVEADLGQTGWEEKLLDA 288
            MDTRGLRLR S  T VFEVDQALVL  K   L    A  +       F E    GV + RV+ VEADL   GW+ +L +A
Sbjct:    1 MDTRGLRLRVSGDTKVFEVDQALVLRVKSALLTQAAAADEVAAAVAGFRERRDRGVGQGRVVPVEADLRVEGWQGELFEA 80          
BLAST of mRNA_A-nodosum_M_contig116.16.1 vs. uniprot
Match: A0A1D2AH29_AUXPR (Uncharacterized protein n=1 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D2AH29_AUXPR)

HSP 1 Score: 58.9 bits (141), Expect = 4.360e-8
Identity = 37/81 (45.68%), Postives = 49/81 (60.49%), Query Frame = 1
Query:   40 KQVVMLGAGMDTRGLRLRASIGTSVFEVDQALVLAAKRNTLQGTLAVSKAFSEESLGGVCEARVIGVEADLGQTGWEEKLL 282
            +QVV+LGAGMDTR  RL+  +G S +EVD++ VLAAKR+ L+   A  +         +      GVEADL + GW E LL
Sbjct:  128 RQVVVLGAGMDTRPWRLQLPLGVSWYEVDRSDVLAAKRHALKKNGAGLEPGHTRKAYPLLTGSWKGVEADLEEPGWWESLL 208          
BLAST of mRNA_A-nodosum_M_contig116.16.1 vs. uniprot
Match: A0A7S2MBA9_9DINO (Hypothetical protein (Fragment) n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2MBA9_9DINO)

HSP 1 Score: 52.0 bits (123), Expect = 2.370e-6
Identity = 31/82 (37.80%), Postives = 44/82 (53.66%), Query Frame = 1
Query:   37 IKQVVMLGAGMDTRGLRLRASIGTSVFEVDQALVLAAKRNTLQGTLAVSKAFSEESLGGVCEARVIGVEADLGQTGWEEKLL 282
            IKQ+V+LGAG DTR  RL      ++FE+D A     KR  +    A +    + ++  V + R + VE DLG+ GW E  L
Sbjct:   34 IKQIVLLGAGFDTRAWRLPLPEDCTIFELDVAKAHELKRERIAEMKAAASPGEKLAMLQVPKCRRVEVEVDLGEAGWAEARL 115          
BLAST of mRNA_A-nodosum_M_contig116.16.1 vs. uniprot
Match: UPI001F0F95B5 (SAM-dependent methyltransferase n=1 Tax=Streptomyces epipremni TaxID=2053013 RepID=UPI001F0F95B5)

HSP 1 Score: 53.1 bits (126), Expect = 4.300e-6
Identity = 36/81 (44.44%), Postives = 45/81 (55.56%), Query Frame = 1
Query:   37 IKQVVMLGAGMDTRGLRLRASIGTSVFEVDQALVLAAKRNTLQGTLAVSKAFSEESLGGVCEARVIGVEADLGQTGWEEKL 279
            I+QVV+LGAG+DTR  RL    G +VFEVD+  VLA K  TL G  AV +            AR + + ADL Q  W  +L
Sbjct:   78 IRQVVLLGAGLDTRAYRLPWPDGCTVFEVDREEVLAFKHRTLDGAAAVPR------------ARRVALAADLRQD-WAARL 145          
BLAST of mRNA_A-nodosum_M_contig116.16.1 vs. uniprot
Match: A0A7C2X3T6_9CHLR (S-adenosyl-L-methionine-dependent methyltransferase (Fragment) n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A7C2X3T6_9CHLR)

HSP 1 Score: 52.8 bits (125), Expect = 5.770e-6
Identity = 25/50 (50.00%), Postives = 34/50 (68.00%), Query Frame = 1
Query:   34 CIKQVVMLGAGMDTRGLRLRASIGTSVFEVDQALVLAAKRNTLQGTLAVS 183
            CI+Q+V+LGAG+DTR  RL    GT +FEVDQ +VL  K + L+   A +
Sbjct:   80 CIRQIVLLGAGLDTRAFRLEWPAGTRLFEVDQPMVLERKESILRDARATA 129          
BLAST of mRNA_A-nodosum_M_contig116.16.1 vs. uniprot
Match: I0Z4G8_COCSC (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0Z4G8_COCSC)

HSP 1 Score: 52.4 bits (124), Expect = 8.030e-6
Identity = 35/85 (41.18%), Postives = 49/85 (57.65%), Query Frame = 1
Query:   40 KQVVMLGAGMDTRGLRLRASIGTSVFEVDQALVLAAKRNTLQGTLAVSKAFSEESLGGVC----EARVIGVEADLGQTGWEEKLL 282
            +QVV+LGAGMD+R  RL    GTS FE+D+A V+ AK+  L    A   +FS ++  GV      A     + DLG  GW ++L+
Sbjct:   53 RQVVLLGAGMDSRAWRLDLPEGTSWFEIDRADVVEAKKKVLTSAQA---SFSADTSKGVKYPLRAASHSSFDVDLGTDGWTKELM 134          
BLAST of mRNA_A-nodosum_M_contig116.16.1 vs. uniprot
Match: A0A7I8K853_SPIIN (Hypothetical protein n=2 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8K853_SPIIN)

HSP 1 Score: 52.4 bits (124), Expect = 9.010e-6
Identity = 35/79 (44.30%), Postives = 44/79 (55.70%), Query Frame = 1
Query:   43 QVVMLGAGMDTRGLRLRASIGTSVFEVDQALVLAAKRNTLQGTLAVSKAFSEESLGGVCEARVIGVEADLGQTGWEEKL 279
            QVV+LGAGMDTR  RL     +SVFEVD   +L  K   L+  L      +EE    V    +I V AD+G++ W EKL
Sbjct:  125 QVVLLGAGMDTRAYRLGCLSRSSVFEVDFPELLETKEALLREALG----SAEEQGAAVMARSLIRVAADIGESEWLEKL 199          
BLAST of mRNA_A-nodosum_M_contig116.16.1 vs. uniprot
Match: A0A0N0A6N2_9ACTN (S-adenosyl-L-methionine-dependent methyltransferase n=6 Tax=Streptomyces TaxID=1883 RepID=A0A0N0A6N2_9ACTN)

HSP 1 Score: 52.0 bits (123), Expect = 1.160e-5
Identity = 29/50 (58.00%), Postives = 35/50 (70.00%), Query Frame = 1
Query:   40 KQVVMLGAGMDTRGLRLRASIGTSVFEVDQALVLAAKRNTLQGTLAVSKA 189
            +QVVMLGAG+DTR  RL    G +VFEVDQ  VLA K++ L G  AV +A
Sbjct:   98 RQVVMLGAGLDTRAYRLAWPEGCTVFEVDQPEVLALKQSVLDGLGAVPRA 147          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig116.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGT9_ECTSI4.880e-2156.86Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FXP3_ECTSI4.150e-1953.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FXP1_ECTSI5.380e-1048.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A1D2AH29_AUXPR4.360e-845.68Uncharacterized protein n=1 Tax=Auxenochlorella pr... [more]
A0A7S2MBA9_9DINO2.370e-637.80Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
UPI001F0F95B54.300e-644.44SAM-dependent methyltransferase n=1 Tax=Streptomyc... [more]
A0A7C2X3T6_9CHLR5.770e-650.00S-adenosyl-L-methionine-dependent methyltransferas... [more]
I0Z4G8_COCSC8.030e-641.18S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A7I8K853_SPIIN9.010e-644.30Hypothetical protein n=2 Tax=Spirodela intermedia ... [more]
A0A0N0A6N2_9ACTN1.160e-558.00S-adenosyl-L-methionine-dependent methyltransferas... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig116contigA-nodosum_M_contig116:276770..277657 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LGT9
PFAMsLCM
Model size290
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue8.01e-22
EggNOG OGsCOG3315@1|root,2QRNU@2759|Eukaryota
DescriptionLeucine carboxyl methyltransferase
Cds size288
COG categoryQ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866561.8558345-CDS-A-nodosum_M_contig116:276771..2769481680866561.8558345-CDS-A-nodosum_M_contig116:276771..276948Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig116 276772..276948 -
1680866561.8652532-CDS-A-nodosum_M_contig116:277310..2773761680866561.8652532-CDS-A-nodosum_M_contig116:277310..277376Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig116 277311..277376 -
1680866561.8763297-CDS-A-nodosum_M_contig116:277612..2776571680866561.8763297-CDS-A-nodosum_M_contig116:277612..277657Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig116 277613..277657 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig116.16.1prot_A-nodosum_M_contig116.16.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig116 276772..277657 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig116.16.1

>prot_A-nodosum_M_contig116.16.1 ID=prot_A-nodosum_M_contig116.16.1|Name=mRNA_A-nodosum_M_contig116.16.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=96bp
DFFEDCALPPRCIKQVVMLGAGMDTRGLRLRASIGTSVFEVDQALVLAAK
RNTLQGTLAVSKAFSEESLGGVCEARVIGVEADLGQTGWEEKLLDA
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mRNA from alignment at A-nodosum_M_contig116:276770..277657-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig116.16.1 ID=mRNA_A-nodosum_M_contig116.16.1|Name=mRNA_A-nodosum_M_contig116.16.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=888bp|location=Sequence derived from alignment at A-nodosum_M_contig116:276770..277657- (Ascophyllum nodosum dioecious)
GATTTTTTCGAGGACTGTGCCCTACCGCCGCGATGTATCAAACAGGTGTG TCTGGAATTACGGTCGTTGCCAATGCGGCAAAGAAGAACGAGAAAACGAG TTTTACTAGAGTTAGCGGGCGATTTGCGTGTATCAATTTCTCGTATTTAC GGTAAATTTTGTTTATATCTGAGTCTTTAATATTTTCAGCGTGGTAATAA GTAGGGGGTTTTGAATGATAATATTCATGCTCACTACACCGCCTCTTCGG ATTGAAATCCAAGAATTAAATCCTGGTGCAGGTCGTTATGCTCGGAGCAG GCATGGACACGCGTGGGCTTCGGCTTAGAGCTAGCATCGGAACCAGCGTG AGTCGTTATCTAAGTATTGAGCATGTTCTGTTCCAAGCATAAAAGTTGGA CATGTTGCTGTCCCCGCTTGTTGAGGTATCTGCACTGGTCATGTATTCAC AAACAGCGTCTGACCCATTCGAGTCGATGCTCATTATAAATACTTTTTGT GTATCCATATGTTTGGATGATTCAAAGTCGGTACGTCTGAACCGATCGGA CCGATGTTCAACGGAGTTTGCACTGTATATCTATGTAAGGTCAGCCATGT TTGCAAGCCTTGACTGCCCTGGGCATCGAGCTAAATACTCGCGCGTTGGC GTCCCCTACTATACGTTCCTCTATCGTATCTCATGATCCCCCTTGCGGGC ATGTTACAGGTGTTCGAAGTCGATCAAGCGCTAGTTCTCGCGGCGAAAAG AAACACCCTCCAAGGAACACTGGCCGTATCGAAAGCGTTTTCTGAGGAGA GCCTGGGCGGTGTTTGCGAAGCACGGGTAATTGGAGTTGAGGCGGATCTT GGGCAGACGGGATGGGAGGAAAAGCTTCTCGATGCCGG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig116:276770..277657-

>mRNA_A-nodosum_M_contig116.16.1 ID=mRNA_A-nodosum_M_contig116.16.1|Name=mRNA_A-nodosum_M_contig116.16.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=288bp|location=Sequence derived from alignment at A-nodosum_M_contig116:276770..277657- (Ascophyllum nodosum dioecious)
GATTTTTTCGAGGACTGTGCCCTACCGCCGCGATGTATCAAACAGGTCGT
TATGCTCGGAGCAGGCATGGACACGCGTGGGCTTCGGCTTAGAGCTAGCA
TCGGAACCAGCGTGTTCGAAGTCGATCAAGCGCTAGTTCTCGCGGCGAAA
AGAAACACCCTCCAAGGAACACTGGCCGTATCGAAAGCGTTTTCTGAGGA
GAGCCTGGGCGGTGTTTGCGAAGCACGGGTAATTGGAGTTGAGGCGGATC
TTGGGCAGACGGGATGGGAGGAAAAGCTTCTCGATGCC
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