mRNA_A-nodosum_M_contig1156.23.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1156.23.1
Unique NamemRNA_A-nodosum_M_contig1156.23.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig1156.23.1 vs. uniprot
Match: A0A6H5JWI1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI1_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 4.410e-20
Identity = 44/77 (57.14%), Postives = 55/77 (71.43%), Query Frame = 1
Query:    1 MEEAQESGKILYPDPLDWWRINAVKFPLLAALARRLLTIPASQAQSERVFSSAGQIVTQTRNRLSSENVELLVALKN 231
            M E  + G  +Y DPLDWWR+    FP LA LARR+L IPA+QA+SER+FS AG IVT+ RN L+   VELLV L++
Sbjct:  209 MYEEDKEGAKVYLDPLDWWRVRCADFPHLANLARRVLAIPATQAESERLFSCAGNIVTKNRNNLAPTTVELLVLLRH 285          
BLAST of mRNA_A-nodosum_M_contig1156.23.1 vs. uniprot
Match: D8LCS5_ECTSI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS5_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 7.310e-20
Identity = 46/78 (58.97%), Postives = 60/78 (76.92%), Query Frame = 1
Query:    1 MEEAQESGKILYPDPLDWWRINAVKFPLLAALARRLLTIPASQAQSERVFSSAGQIVTQTRNRLSSENVELLVALKNI 234
            M++     K ++ +PLD WR   +++PLLAALARR+L IP+SQAQSERVFS+AG  VT TR+RL  ENVELLV L+N+
Sbjct:  469 MQKTNTGDKKVFNNPLDRWRKKQLEYPLLAALARRVLAIPSSQAQSERVFSTAGLTVTPTRSRLLDENVELLVYLRNV 546          
BLAST of mRNA_A-nodosum_M_contig1156.23.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 6.740e-19
Identity = 43/73 (58.90%), Postives = 57/73 (78.08%), Query Frame = 1
Query:   13 QESGKILYPDPLDWWRINAVKFPLLAALARRLLTIPASQAQSERVFSSAGQIVTQTRNRLSSENVELLVALKN 231
            +E G+ +   PL+WWR+ A ++P LA+LARR+L IPA QAQSERVFSSAG +VT+TR R+  ENV L+V L+N
Sbjct:  470 EEKGQEVRGKPLEWWRVKAREYPKLASLARRVLCIPAFQAQSERVFSSAGLVVTKTRARMDPENVGLMVFLRN 542          
BLAST of mRNA_A-nodosum_M_contig1156.23.1 vs. uniprot
Match: A0A151I7P1_9HYME (Zinc finger BED domain-containing protein 1 (Fragment) n=1 Tax=Cyphomyrmex costatus TaxID=456900 RepID=A0A151I7P1_9HYME)

HSP 1 Score: 77.0 bits (188), Expect = 6.950e-17
Identity = 36/62 (58.06%), Postives = 46/62 (74.19%), Query Frame = 1
Query:   40 DPLDWWRINAVKFPLLAALARRLLTIPASQAQSERVFSSAGQIVTQTRNRLSSENVELLVAL 225
            D +DWW+ N  +FP+LAA+AR+ L IPA+Q  SER+FS AG IVT TR++L  ENVE L  L
Sbjct:   16 DIIDWWKCNVTRFPILAAVARQYLAIPATQVSSERLFSDAGNIVTATRSKLIPENVEKLCFL 77          
BLAST of mRNA_A-nodosum_M_contig1156.23.1 vs. uniprot
Match: UPI000EAB1B8F (zinc finger BED domain-containing protein 1-like n=1 Tax=Ceratina calcarata TaxID=156304 RepID=UPI000EAB1B8F)

HSP 1 Score: 78.6 bits (192), Expect = 1.470e-16
Identity = 36/57 (63.16%), Postives = 46/57 (80.70%), Query Frame = 1
Query:   46 LDWWRINAVKFPLLAALARRLLTIPASQAQSERVFSSAGQIVTQTRNRLSSENVELL 216
            + WW+ N V+FPLLAA+AR LL IPA+Q  SER+FS+AG IV + R+RL SENVE+L
Sbjct:  104 ISWWKANIVRFPLLAAVARNLLAIPATQVTSERLFSTAGNIVNEKRSRLCSENVEML 160          
BLAST of mRNA_A-nodosum_M_contig1156.23.1 vs. uniprot
Match: A0A1A8CIX7_9TELE (Dimer_Tnp_hAT domain-containing protein (Fragment) n=1 Tax=Nothobranchius kadleci TaxID=1051664 RepID=A0A1A8CIX7_9TELE)

HSP 1 Score: 72.4 bits (176), Expect = 5.430e-15
Identity = 32/62 (51.61%), Postives = 48/62 (77.42%), Query Frame = 1
Query:   43 PLDWWRINAVKFPLLAALARRLLTIPASQAQSERVFSSAGQIVTQTRNRLSSENVELLVALK 228
            PL+WW++NA  +P+LA+LA+  L IPA+   SERVFS+AG IV+  R+ ++ E+V++LV LK
Sbjct:   23 PLEWWKVNAYAYPILASLAKAYLCIPATSVPSERVFSTAGDIVSAQRSLITPEHVDMLVFLK 84          
BLAST of mRNA_A-nodosum_M_contig1156.23.1 vs. uniprot
Match: UPI00109FC612 (zinc finger BED domain-containing protein 4-like n=1 Tax=Erpetoichthys calabaricus TaxID=27687 RepID=UPI00109FC612)

HSP 1 Score: 73.2 bits (178), Expect = 8.390e-15
Identity = 36/70 (51.43%), Postives = 47/70 (67.14%), Query Frame = 1
Query:   19 SGKILYPDPLDWWRINAVKFPLLAALARRLLTIPASQAQSERVFSSAGQIVTQTRNRLSSENVELLVALK 228
            SG  +  DPL WW+ N  K+P LA +AR  L +P +   SERVFS+AG IVT  R+ LS ENV++L+ LK
Sbjct:   59 SGIPVDGDPLTWWKSNECKYPHLATMARHHLAVPGTSVPSERVFSTAGDIVTAKRSTLSPENVDILMFLK 128          
BLAST of mRNA_A-nodosum_M_contig1156.23.1 vs. uniprot
Match: A0A2G9RVU8_LITCT (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Lithobates catesbeianus TaxID=8400 RepID=A0A2G9RVU8_LITCT)

HSP 1 Score: 75.1 bits (183), Expect = 8.660e-15
Identity = 35/63 (55.56%), Postives = 45/63 (71.43%), Query Frame = 1
Query:   40 DPLDWWRINAVKFPLLAALARRLLTIPASQAQSERVFSSAGQIVTQTRNRLSSENVELLVALK 228
            DPL WW+ N  K+P +A +AR  L +P S   SERVFS+AG IVT TR+ LS +NV++LV LK
Sbjct:  153 DPLTWWKSNECKYPHIATMARCYLAVPGSSVPSERVFSTAGDIVTATRSTLSPDNVDILVFLK 215          
BLAST of mRNA_A-nodosum_M_contig1156.23.1 vs. uniprot
Match: UPI001963A909 (zinc finger BED domain-containing protein 4-like n=2 Tax=Polypterus senegalus TaxID=55291 RepID=UPI001963A909)

HSP 1 Score: 73.2 bits (178), Expect = 1.060e-14
Identity = 34/62 (54.84%), Postives = 46/62 (74.19%), Query Frame = 1
Query:   43 PLDWWRINAVKFPLLAALARRLLTIPASQAQSERVFSSAGQIVTQTRNRLSSENVELLVALK 228
            PL WWR N+ K+PLL+ L +  L+IPA+   SERVFS+AG IVT  R++L  ENV++L+ LK
Sbjct:   76 PLTWWRENSSKYPLLSPLVKEYLSIPATSVPSERVFSTAGDIVTAQRSQLLPENVDMLIFLK 137          
BLAST of mRNA_A-nodosum_M_contig1156.23.1 vs. uniprot
Match: UPI000C26C2C9 (zinc finger BED domain-containing protein 4-like n=3 Tax=Drosophila willistoni TaxID=7260 RepID=UPI000C26C2C9)

HSP 1 Score: 73.6 bits (179), Expect = 1.080e-14
Identity = 34/63 (53.97%), Postives = 48/63 (76.19%), Query Frame = 1
Query:   40 DPLDWWRINAVKFPLLAALARRLLTIPASQAQSERVFSSAGQIVTQTRNRLSSENVELLVALK 228
            DPLD+W+IN ++F  LA  A+++L IP S  +SERVFS AG+IV+Q R+RL  + V +L+ALK
Sbjct:   90 DPLDYWKINEIQFGQLAKCAKKILCIPGSSVESERVFSKAGEIVSQKRSRLKPKAVNMLLALK 152          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1156.23.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JWI1_9PHAE4.410e-2057.14Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
D8LCS5_ECTSI7.310e-2058.97Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ec... [more]
A0A6H5JHP9_9PHAE6.740e-1958.90Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 13... [more]
A0A151I7P1_9HYME6.950e-1758.06Zinc finger BED domain-containing protein 1 (Fragm... [more]
UPI000EAB1B8F1.470e-1663.16zinc finger BED domain-containing protein 1-like n... [more]
A0A1A8CIX7_9TELE5.430e-1551.61Dimer_Tnp_hAT domain-containing protein (Fragment)... [more]
UPI00109FC6128.390e-1551.43zinc finger BED domain-containing protein 4-like n... [more]
A0A2G9RVU8_LITCT8.660e-1555.56Dimer_Tnp_hAT domain-containing protein n=1 Tax=Li... [more]
UPI001963A9091.060e-1454.84zinc finger BED domain-containing protein 4-like n... [more]
UPI000C26C2C91.080e-1453.97zinc finger BED domain-containing protein 4-like n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1156contigA-nodosum_M_contig1156:197956..198189 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G5Z0
PFAMsDUF659,Dimer_Tnp_hAT,zf-BED
Model size234
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.8e-22
EggNOG OGsKOG1121@1|root,KOG1121@2759|Eukaryota
Descriptionprotein dimerization activity
Cds size234
COG categoryE
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866560.383158-CDS-A-nodosum_M_contig1156:197955..1981891680866560.383158-CDS-A-nodosum_M_contig1156:197955..198189Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1156 197956..198189 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1156.23.1prot_A-nodosum_M_contig1156.23.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1156 197956..198189 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1156.23.1

>prot_A-nodosum_M_contig1156.23.1 ID=prot_A-nodosum_M_contig1156.23.1|Name=mRNA_A-nodosum_M_contig1156.23.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=78bp
MEEAQESGKILYPDPLDWWRINAVKFPLLAALARRLLTIPASQAQSERVF
SSAGQIVTQTRNRLSSENVELLVALKNI
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mRNA from alignment at A-nodosum_M_contig1156:197956..198189+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1156.23.1 ID=mRNA_A-nodosum_M_contig1156.23.1|Name=mRNA_A-nodosum_M_contig1156.23.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=234bp|location=Sequence derived from alignment at A-nodosum_M_contig1156:197956..198189+ (Ascophyllum nodosum dioecious)
ATGGAAGAGGCACAGGAGAGCGGCAAGATCCTCTACCCCGACCCGCTGGA TTGGTGGCGGATAAACGCCGTCAAATTCCCGCTGCTAGCGGCGCTTGCCC GGCGCCTTTTGACCATCCCGGCATCGCAGGCGCAGTCAGAGCGCGTGTTC TCGAGCGCTGGGCAGATTGTCACCCAAACGCGCAACCGCCTGTCATCGGA AAACGTCGAGCTTCTGGTGGCATTGAAGAACATT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1156:197956..198189+

>mRNA_A-nodosum_M_contig1156.23.1 ID=mRNA_A-nodosum_M_contig1156.23.1|Name=mRNA_A-nodosum_M_contig1156.23.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=234bp|location=Sequence derived from alignment at A-nodosum_M_contig1156:197956..198189+ (Ascophyllum nodosum dioecious)
ATGGAAGAGGCACAGGAGAGCGGCAAGATCCTCTACCCCGACCCGCTGGA
TTGGTGGCGGATAAACGCCGTCAAATTCCCGCTGCTAGCGGCGCTTGCCC
GGCGCCTTTTGACCATCCCGGCATCGCAGGCGCAGTCAGAGCGCGTGTTC
TCGAGCGCTGGGCAGATTGTCACCCAAACGCGCAACCGCCTGTCATCGGA
AAACGTCGAGCTTCTGGTGGCATTGAAGAACATT
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