mRNA_A-nodosum_M_contig11552.3.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig11552.3.1
Unique NamemRNA_A-nodosum_M_contig11552.3.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig11552.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig11552contigA-nodosum_M_contig11552:9516..10456 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size782
Hectar predicted targeting categoryother localisation
Exons2
Cds size609
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866559.2192886-UTR-A-nodosum_M_contig11552:9515..96161680866559.2192886-UTR-A-nodosum_M_contig11552:9515..9616Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig11552 9516..9616 -
1680866559.24737-UTR-A-nodosum_M_contig11552:10384..104561680866559.24737-UTR-A-nodosum_M_contig11552:10384..10456Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig11552 10385..10456 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866559.2280147-CDS-A-nodosum_M_contig11552:9616..97221680866559.2280147-CDS-A-nodosum_M_contig11552:9616..9722Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig11552 9617..9722 -
1680866559.2373798-CDS-A-nodosum_M_contig11552:9881..103841680866559.2373798-CDS-A-nodosum_M_contig11552:9881..10384Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig11552 9882..10384 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig11552.3.1prot_A-nodosum_M_contig11552.3.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig11552 9617..10384 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig11552.3.1

>prot_A-nodosum_M_contig11552.3.1 ID=prot_A-nodosum_M_contig11552.3.1|Name=mRNA_A-nodosum_M_contig11552.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=203bp
MHVAETGNLDVVRYARAQGCHWDDKSCASASVGGHLAVLKWLRSNGCPWG
SDVCASAAIGGHLELLQWCRAQGCPWDSTTVEYAAWGGHLDVCKWARANG
CPRDFMACMWAASCGHLDVLKWLKDDECPWDDATALAITAAGQWGDSQWA
RANGCPWNEATCAQAASSGRPDILRWCRENGCPWNEFTCSSAAAGGHMSV
LE*
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mRNA from alignment at A-nodosum_M_contig11552:9516..10456-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig11552.3.1 ID=mRNA_A-nodosum_M_contig11552.3.1|Name=mRNA_A-nodosum_M_contig11552.3.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=941bp|location=Sequence derived from alignment at A-nodosum_M_contig11552:9516..10456- (Ascophyllum nodosum dioecious)
GCCGCTGTGCAGTCAGTACCACGGCTCTCGTTGGCCAAGGACAACGGGTG
TCGATGGGACGACATCACATTCATGCACGTGGCCGAAACAGGGAACCTGG
ACGTGGTAAGGTACGCTCGTGCTCAAGGCTGTCATTGGGACGATAAATCC
TGCGCTTCAGCTTCTGTCGGGGGACATCTCGCCGTGCTGAAATGGCTCAG
GTCAAACGGGTGCCCCTGGGGTAGCGACGTTTGCGCGTCGGCCGCCATTG
GGGGCCATCTGGAGCTCCTCCAGTGGTGCCGAGCTCAAGGTTGCCCATGG
GACAGCACGACCGTAGAGTATGCAGCTTGGGGGGGGCATCTCGACGTGTG
CAAGTGGGCGAGAGCAAACGGTTGCCCTCGGGATTTCATGGCATGCATGT
GGGCTGCGAGCTGTGGGCACCTAGATGTACTGAAATGGCTGAAGGACGAC
GAATGCCCCTGGGACGACGCAACGGCGCTGGCGATCACGGCGGCAGGTCA
GTGGGGAGATTCTCAATGGGCCAGGGCCAACGGCTGCCCGTGGAACGAGG
CCACGTGCGCGCAGGCCGCTAGTTCGTAACCTAGAGGTCTTGAAGTGGTG
TCGCGCCAACGGTTGTCCTGGAATGGAGCGCACACCTTCCTGTGCGGCTC
GCGGGGTTCCTGGACATTCTTAAATGGTGTCGGGAGGAGGGCTGCCTTGG
GATGAAAGGGTCTGCGCTGGAGTGCCGCCAGCAGCGGTCGTCCTGATATT
CTTCGATGGTGCCGCGAGAACGGCTGCCCGTGGAACGAGTTCACCTGCTC
CAGCGCGGCTGCCGGAGGGCATATGAGCGTTCTGGAGTGAGTCGGGCGAA
CGGCTGCCCGTGGGATGAACGCACCTGCCAAAAGGCGGCTGCAGGAGGGC
ACGATGCTGTGTTGGAGTGGTGCAGGGCCAACGGGTGCCCA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig11552:9516..10456-

>mRNA_A-nodosum_M_contig11552.3.1 ID=mRNA_A-nodosum_M_contig11552.3.1|Name=mRNA_A-nodosum_M_contig11552.3.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=609bp|location=Sequence derived from alignment at A-nodosum_M_contig11552:9516..10456- (Ascophyllum nodosum dioecious)
ATGCACGTGGCCGAAACAGGGAACCTGGACGTGGTAAGGTACGCTCGTGC
TCAAGGCTGTCATTGGGACGATAAATCCTGCGCTTCAGCTTCTGTCGGGG
GACATCTCGCCGTGCTGAAATGGCTCAGGTCAAACGGGTGCCCCTGGGGT
AGCGACGTTTGCGCGTCGGCCGCCATTGGGGGCCATCTGGAGCTCCTCCA
GTGGTGCCGAGCTCAAGGTTGCCCATGGGACAGCACGACCGTAGAGTATG
CAGCTTGGGGGGGGCATCTCGACGTGTGCAAGTGGGCGAGAGCAAACGGT
TGCCCTCGGGATTTCATGGCATGCATGTGGGCTGCGAGCTGTGGGCACCT
AGATGTACTGAAATGGCTGAAGGACGACGAATGCCCCTGGGACGACGCAA
CGGCGCTGGCGATCACGGCGGCAGGTCAGTGGGGAGATTCTCAATGGGCC
AGGGCCAACGGCTGCCCGTGGAACGAGGCCACGTGCGCGCAGGCCGCTAG
TTCCGGTCGTCCTGATATTCTTCGATGGTGCCGCGAGAACGGCTGCCCGT
GGAACGAGTTCACCTGCTCCAGCGCGGCTGCCGGAGGGCATATGAGCGTT
CTGGAGTGA
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