mRNA_A-nodosum_M_contig1155.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1155.2.1
Unique NamemRNA_A-nodosum_M_contig1155.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig1155.2.1 vs. uniprot
Match: D7FV02_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV02_ECTSI)

HSP 1 Score: 239 bits (609), Expect = 5.040e-70
Identity = 178/484 (36.78%), Postives = 246/484 (50.83%), Query Frame = 1
Query:    1 MAVNFAVSTKAPILPIPLDNEMLHGLRRFSDRFAGKPMSQASLKALQCVPLAWACLAVREAETMSAAKRNLAASKSMQEIAVPGWIKVIEKAMNDTEGAIRMPTGWKEALYYTTLGTGKGKRETFMQKPATCMTKFKPLKTEYTKGAAWWYDTHEDVAAKLPSGT---------SPRTHLRNWRGTCCFSPLDPGKT*RRPRKRRNSTRVTIAWVATIA*REGMRPGAANWVLSTPTTPRQSNSTAGGSSEAVDTPDSLARMAAAAHLQALAGSGAAGDGTPRGEVMDKPD---EMPDEYYYPYLLLACMWTSWGGNTPSEWKIPCVFK--RAAEAQEELGKG*G----------DRYHRGQPYRQSLRDVSAEPERRRDEPPPALRRHKAGEGPGKER*DRQGEQEG*DGIPRHEKEGLGRHGRGQYPRRGAFCEHQKVGRAERKQAAAAARAEKITSLEKKLMLGLGDPVTTKAELHSLLDQ 1380
            MA+NF +S KAP L I L  +M+ G  R+ D+F G+ M+QA LKALQCVP+A A LAV++ E M +  RN A SK MQEIAVPGWIKV E A+ D++G +  P GWK+ALYYTTLGTG+  R+TFM+ P    TKFK LKTEYTKGA  W+DTH + + +L SGT         S   + +  +G               PR  R++  V ++ V T +        A                    S      P +LAR AA A  + +A   A+G G+  G  + +P+   ++PD+YYYPYLLLAC W+SW GNTPSEWK        R   ++ + G   G          D    G P    L + + +   RR       +  +  +   KE+ +     E  D      K GL                 +K+ + + +   AA R +KI +LE+KLML + DP   KA+L++LLD+
Sbjct:    1 MAINFDISMKAPPLNIDLTEDMMWGFHRYCDKFGGRKMNQAGLKALQCVPIAHAALAVKQGEDMKSDVRNAAMSKRMQEIAVPGWIKVCEAAIKDSQGELVFPHGWKDALYYTTLGTGENPRQTFMKNPKALFTKFKALKTEYTKGAQLWFDTHPESSTELNSGTQTTDALDDLSADMYRKATKGNAAKEDAAADIFFNTPR--RSAEGVVVSGVTTTSPLPTPAADAXXXXXXXXXXXXXXXXXXXTS------PQALARRAAEALRREMASPTASGSGS--GANLGRPEGNEDIPDDYYYPYLLLACPWSSWSGNTPSEWKHLAASSGPRNRASKGDKGNSNGNDNSNEVVITDDNPIGSPRAMGLMNANGDAVSRRQYFANIKKEKEQVKKDAKEKENVALRNEALD----TRKRGLAAMESANTHVGELSSNIKKMVQLQEESNLAARRKDKIEALERKLMLAISDPNMVKAQLNALLDE 470          
BLAST of mRNA_A-nodosum_M_contig1155.2.1 vs. uniprot
Match: A0A6H5JXM3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXM3_9PHAE)

HSP 1 Score: 163 bits (413), Expect = 6.490e-41
Identity = 89/182 (48.90%), Postives = 122/182 (67.03%), Query Frame = 1
Query:    1 MAVNFAVSTKAPILPIPLDNEMLHGLRRFSDRFAGKPMSQASLKALQCVPLAWACLAVREAETMSAAKRNLAASKSMQEIAVPGWIKVIEKAMNDTEGAIRMPTGWKEALYYTTLGTGKGKRETFMQKPATCMTKFKPLKTEYTKGAAW-WYDTHE-DVAAKLPSGTSPRTHLRNWRGTCCF 540
            MAV+F  S KAP+LPI    + +  LR+F   +  K M+Q +LK L  +PL  + LAV+EA+ MSAA+RNLAASK MQEIAVPG+IK+IE A++  EG  +MP  WK  +YYTTLG+G  K +TFM+KP+T +TKFK  K +YT+   W W DT++ +  ++LPSGT+ +  L        F
Sbjct:  105 MAVDFPKSQKAPMLPINRPEDFMFALRKFCGTYGNKTMTQPALKMLPSIPLVHSALAVKEADKMSAAQRNLAASKCMQEIAVPGFIKLIEHALSTMEGPPQMPHKWKVMVYYTTLGSGTSKAKTFMEKPSTVLTKFKSYKAKYTR--VWLWLDTNDKNTPSELPSGTNTQDSLEELNDAMWF 284          
BLAST of mRNA_A-nodosum_M_contig1155.2.1 vs. uniprot
Match: A0A6H5KFH5_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFH5_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 3.090e-30
Identity = 64/118 (54.24%), Postives = 86/118 (72.88%), Query Frame = 1
Query:    1 MAVNFAVSTKAPILPIPLDNEMLHGLRRFSDRFAGKPMSQASLKALQCVPLAWACLAVREAETMSAAKRNLAASKSMQEIAVPGWIKVIEKAMNDTEGAIRMPTGWKEALYYTTLGTG 354
            MAV+F  S KAP+LPI L  + +  LR+F   +  K M+Q +LK LQ +PL  + LAV+EA+ MSAA+RNLAASK MQEIAVPG+IK+IE A++   G ++MP  WK  +YYT+LG+G
Sbjct:    1 MAVDFPKSQKAPMLPINLSEDFMFALRKFCGTYGNKTMTQPALKMLQSIPLVHSALAVKEADKMSAAQRNLAASKCMQEIAVPGFIKLIEHALSIMGGPLQMPHKWKVMVYYTSLGSG 118          
BLAST of mRNA_A-nodosum_M_contig1155.2.1 vs. uniprot
Match: A0A6H5K6E0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6E0_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 1.400e-22
Identity = 57/111 (51.35%), Postives = 81/111 (72.97%), Query Frame = 2
Query:  932 KYLASSSGPQKRKKSSAKDEEIDITEDNPIGSPSAMSRLNPNGDAMSRRQHYAAIKREKDLAKKDEIDKENKKARTEFLDTRKKGLAAMEEANIHVGVLSANIKRLVELRE 1264
            K+L SS GP  ++K      ++ +  +NP+ SP+ MSRLNPNGDA+SRRQH+AAIKREK+  +K   DK  ++A  E L+T+KKGLAA+E A+ H+  + AN+KR+VEL+E
Sbjct:   58 KHLDSSDGPSIKRKGG----DVTVDSENPVCSPAVMSRLNPNGDALSRRQHFAAIKREKEQERKKAADKRLQEAWKEALETKKKGLAALEAASTHIETIGANMKRMVELKE 164          
BLAST of mRNA_A-nodosum_M_contig1155.2.1 vs. uniprot
Match: A0A6H5JUT5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUT5_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 3.320e-22
Identity = 55/103 (53.40%), Postives = 75/103 (72.82%), Query Frame = 1
Query:    1 MAVNFAVSTKAPILPIPLDNEMLHGLRRFSDRFAGKPMSQASLKALQCVPLAWACLAVREAETMSAAKRNLAASKSMQEIAVPGWIKVIEKAMNDTEGAIRMP 309
            MAV+FA S KAP+LPI L  + +  LR+F   +  K M+Q +LK LQ +P   + LAV+EA+ MSAA+RNLAASK MQEIAVPG+ K+IE A++  +G ++MP
Sbjct:    1 MAVDFAKSQKAPMLPIDLSEDFMFALRKFCGTYGNKTMTQPALKMLQPIPRVHSALAVKEADKMSAAQRNLAASKCMQEIAVPGF-KLIEHALSTMDGPLQMP 102          
BLAST of mRNA_A-nodosum_M_contig1155.2.1 vs. uniprot
Match: A0A6H5JVT0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVT0_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 1.810e-21
Identity = 53/119 (44.54%), Postives = 74/119 (62.18%), Query Frame = 1
Query:    1 MAVNFAVSTKAPILPIPLDNEMLHGLRRFSDRFAGKPMSQASLKALQCVPLAWACLAVREAETMSAAKRNLAASKSMQEIAVPGWIKVIEKAMNDT---EGAIRMPTGWKEALYYTTLG 348
            MA+N  VS +AP LP+ L N+++     F   + G P  Q S KALQC P+AWACLAV+EAE  S   R+   S+  QEIA+PGWIK+  +A+ ++   +  +R P G +  LY+ TLG
Sbjct:    1 MALNLEVSNRAPALPVELTNDLMDSFGIFCATYGGTPRGQQSQKALQCFPIAWACLAVKEAEKKSKEVRDRDVSRCYQEIALPGWIKLCHRAITESAESDNPLRFPAGLESKLYFPTLG 119          
BLAST of mRNA_A-nodosum_M_contig1155.2.1 vs. uniprot
Match: A0A6H5JTM3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTM3_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 2.910e-21
Identity = 60/111 (54.05%), Postives = 82/111 (73.87%), Query Frame = 2
Query:  932 KYLASSSGPQKRKKSSAKDEEIDITEDNPIGSPSAMSRLNPNGDAMSRRQHYAAIKREKDLAKKDEIDKENKKARTEFLDTRKKGLAAMEEANIHVGVLSANIKRLVELRE 1264
            K+L SS GP K++K +    ++ +  +NP+ SP+ MSRLNPNGDA+SRRQH+AAIKREK+   K   +KE ++AR E L+T KKGLAA E AN HV  + A++KR+VEL+E
Sbjct:  164 KHLDSSDGPSKKRKGA----DVTVDSENPVCSPAVMSRLNPNGDALSRRQHFAAIKREKEQEMKAAAEKELQEARKEPLET-KKGLAAFEAANTHVETIGADMKRMVELKE 269          
BLAST of mRNA_A-nodosum_M_contig1155.2.1 vs. uniprot
Match: A0A6H5KGF1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGF1_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 5.880e-18
Identity = 50/93 (53.76%), Postives = 71/93 (76.34%), Query Frame = 2
Query:  932 KYLASSSGPQKRKKSSAKDEEIDITEDNPIGSPSAMSRLNPNGDAMSRRQHYAAIKREKDLAKKDEIDKENKKARTEFLDTRKKGLAAMEEAN 1210
            K+L SS GP K++K      ++++  +NP+ SP+ MSRL+PNGDA+SRRQH+AAIKREK+  +K   DKE +++R E L+T+KKGLAA+E AN
Sbjct:  145 KHLDSSDGPSKKRKGG----DVNVDSENPVCSPAVMSRLDPNGDALSRRQHFAAIKREKEQERKATADKELQESRKETLETKKKGLAALEAAN 233          
BLAST of mRNA_A-nodosum_M_contig1155.2.1 vs. uniprot
Match: A0A6H5KJW8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJW8_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 1.130e-17
Identity = 56/111 (50.45%), Postives = 76/111 (68.47%), Query Frame = 2
Query:  932 KYLASSSGPQKRKKSSAKDEEIDITEDNPIGSPSAMSRLNPNGDAMSRRQHYAAIKREKDLAKKDEIDKENKKARTEFLDTRKKGLAAMEEANIHVGVLSANIKRLVELRE 1264
            K+L SS G  K++       ++ +  +NP+ SP+ MSRLNPNGDA+SRRQH+AAIKREK+  +K   DKE +      L+T KKG AA+E AN HV  + AN+KR+VEL+E
Sbjct:  148 KHLDSSDGLSKKRTGG----DVTVDSENPVYSPAVMSRLNPNGDALSRRQHFAAIKREKEEERKAAADKELQXXXXXALET-KKGPAALEAANTHVDSIGANMKRMVELKE 253          
BLAST of mRNA_A-nodosum_M_contig1155.2.1 vs. uniprot
Match: A0A6H5KHV4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHV4_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 1.200e-14
Identity = 46/136 (33.82%), Postives = 69/136 (50.74%), Query Frame = 1
Query:    1 MAVNFAVSTKAPILPIPLDNEMLHGLRRFSDRFAGKPMSQASLKALQCVPLAWACLAVREAETMSAAKRNLAASKSMQ-EIAVPGWIKVIEKAMN-------------------------DTEGAIRMPTGWKEAL 330
            MA++  V+ +AP LP+ L N+++     F   + G P+ Q S KALQC P+AWACLAV+EAE  S   R+   S+    EI +PGWIK+  +A+                          +++  +R P GW+  L
Sbjct:    1 MALDLEVTNRAPALPVELTNDLMDSFGIFCATYGGTPLGQQSQKALQCFPIAWACLAVKEAEKKSKEVRDRDVSRCYHDEIELPGWIKLCNRAIASPRXMEXXXXXXXXXXXXXXXXESAESDNPLRFPAGWETKL 136          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1155.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D7FV02_ECTSI5.040e-7036.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JXM3_9PHAE6.490e-4148.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFH5_9PHAE3.090e-3054.24Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6E0_9PHAE1.400e-2251.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUT5_9PHAE3.320e-2253.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVT0_9PHAE1.810e-2144.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTM3_9PHAE2.910e-2154.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KGF1_9PHAE5.880e-1853.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJW8_9PHAE1.130e-1750.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHV4_9PHAE1.200e-1433.82Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1155contigA-nodosum_M_contig1155:71591..74240 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1380
Hectar predicted targeting categoryother localisation
Exons3
Cds size567
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866559.0126045-UTR-A-nodosum_M_contig1155:71590..724031680866559.0126045-UTR-A-nodosum_M_contig1155:71590..72403Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig1155 71591..72403 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866559.0249145-CDS-A-nodosum_M_contig1155:72403..725121680866559.0249145-CDS-A-nodosum_M_contig1155:72403..72512Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1155 72404..72512 -
1680866559.0331984-CDS-A-nodosum_M_contig1155:73003..731091680866559.0331984-CDS-A-nodosum_M_contig1155:73003..73109Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1155 73004..73109 -
1680866559.041634-CDS-A-nodosum_M_contig1155:73888..742401680866559.041634-CDS-A-nodosum_M_contig1155:73888..74240Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1155 73889..74240 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1155.2.1prot_A-nodosum_M_contig1155.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1155 72404..74240 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1155.2.1

>prot_A-nodosum_M_contig1155.2.1 ID=prot_A-nodosum_M_contig1155.2.1|Name=mRNA_A-nodosum_M_contig1155.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=189bp
MAVNFAVSTKAPILPIPLDNEMLHGLRRFSDRFAGKPMSQASLKALQCVP
LAWACLAVREAETMSAAKRNLAASKSMQEIAVPGWIKVIEKAMNDTEGAI
RMPTGWKEALYYTTLGTGKGKRETFMQKPATCMTKFKPLKTEYTKGAAWW
YDTHEDVAAKLPSGTSPRTHLRNWRGTCCFSPLDPGKT*
back to top

mRNA from alignment at A-nodosum_M_contig1155:71591..74240-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1155.2.1 ID=mRNA_A-nodosum_M_contig1155.2.1|Name=mRNA_A-nodosum_M_contig1155.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2650bp|location=Sequence derived from alignment at A-nodosum_M_contig1155:71591..74240- (Ascophyllum nodosum dioecious)
ATGGCTGTAAATTTCGCAGTCTCTACGAAAGCGCCTATACTCCCAATACC ACTCGACAACGAGATGCTGCATGGGCTTAGAAGGTTCAGCGATAGATTCG CTGGCAAGCCGATGTCGCAGGCATCGTTGAAGGCACTTCAATGCGTGCCG CTTGCGTGGGCTTGTCTTGCCGTGAGAGAGGCGGAGACAATGTCTGCAGC GAAGCGTAACTTAGCGGCATCCAAAAGTATGCAGGAGATCGCGGTTCCGG GGTGGATTAAGGTGATAGAGAAAGCGATGAACGACACGGAGGGCGCAATC AGGATGCCAACTGGGTGGAAAGAGGCACTGTACTACACTACTCTCGGGAC AGGTGTGTTCCGTTGAAGCATGCGTTATTCACGTTGCGGAACCACGGCTG CTGGTATCCACCTCAGCACTTACTCTGATTTCCTGCCTGTGTGTAGTTGG GCGGTTTGTGGTTCTACGCACAGCAGTACTTGATGATAAAAGAGTATACG AGCTCATATCCAACAGCTGCATGCTGCTTTCAATTTCAAAATTCCCCCTC TGTTTGGAGTAAGTGAAAACAAACGTCGGCCCCAACGGCAGCATACGTTA GGTAGTGTAGCAATGCAGGAGTTCACTACTGCTGTCTGGTGTGTTTGTTG CGTGAAGTTTCCAACCATGTTTCCACCGTTTCTTTCGTGCCAAGTGCGTA CGCCTACAGCCCTGCAGTTAACATACGACGCTTGAGAACGACGCACTCCT GGGCGCAGCAAATACCGTTGTAGTACGCACACCGACCCTATACAAGGCGT CCCTACCTTAGTTATTATTTCGTGTTATCGCCCCGCCGCATGTAGCTGCT ACTAATAGCTACCTGGTAGGCTACTGTATATACAGCATTAACAGATAAGG GACAGGTGCTTGTACGTGCAGCAGTTTTTACGTGGAGCAGTTCTTGTTGT CCTTGGTTCTGGACATGATAAAGAAAGGCCTCTGTATGCAGCAGCACTTT ACTTTACTTTGTGGCCTCGGTAGTAGTGATTGCAGGCAGCGGAACAAGCA ATAGTTTTGCCCTCTGAGAAAATACGAGCTCATCTATTACCCTTCTTCCC TTGCGCGTGGAACGTTGGCGTATGTGTACAGGCAAAGGGAAAAGGGAGAC TTTTATGCAGAAGCCAGCGACCTGTATGACGAAGTTCAAACCCTTGAAAA CAGAGTACACCAAAGGAGCTGCATGGTGGTACGACACGTGAGTACAGGGA TGTCCAAACCTGCCGAGTGGCTCTCGTTGCATTACTGAGCTGTACGTTTA TACCACGTGGAAATATGGGTAGGCATGAAAGAAACCCCTCTCATAGTATA ATATGCATATAACCTTCGTCCGGGCATTCTCCGGTGTAGTATCGGCGCAG CCAACGGTGTAAACGCTCGTTTATACTTCGCTTGCTGTTGTCTAATATTA GCGCCCAAGACGTGCACTTGTATGGAAGAAAAACGTGGTTGGAGAAGCCA AGTCCTTTTCTTGTTTTCATGACGGTCCACAACAGCATCGATGAATATCC GGACAAAATATGACGAAAGAAAGTTCTTTGGGTTCGTTTGCCCCTTCACA GAATGCACAATAGCATTGTAGAACTAAAACTAACGGTGCGTGGGGGCCGT TTATTCAGTTTCTGTTATCTCTTTCCGCAGCGAACGAGTAGAACTCATTT TTCGAACCCCAATCGATTTGTTTGGCAGGCACGAGGACGTCGCCGCTAAA CTTCCATCTGGCACAAGTCCGAGGACGCACTTAAGGAATTGGAGAGGGAC ATGTTGCTTCAGTCCGTTAGATCCAGGAAAGACGTGACGAAGGCCCAGGA AGCGTCGGAATTCGACGAGGGTAACGATCGCTTGGGTGGCGACGATAGCG TAGAGGGAGGGGATGCGTCCGGGGGCCGCGAACTGGGTTCTTTCGACTCC GACCACGCCTCGTCAATCCAACTCAACTGCGGGGGGCTCCAGCGAGGCCG TGGACACGCCGGATTCTCTCGCACGCATGGCTGCCGCCGCCCACCTCCAA GCATTGGCGGGGTCGGGAGCGGCTGGAGACGGCACTCCGCGTGGTGAAGT CATGGACAAGCCCGACGAGATGCCCGATGAATACTACTACCCGTACCTTT TGCTCGCATGCATGTGGACCTCGTGGGGTGGTAACACTCCATCGGAGTGG AAAATACCTTGCGTCTTCAAGCGGGCCGCAGAAGCGCAAGAAGAGCTCGG CAAAGGATGAGGAGATCGATATCACCGAGGACAACCCTATCGGCAGTCCC TCCGCGATGTCTCGGCTGAACCCGAACGGCGACGCGATGAGCCGCCGCCA GCACTACGCCGCCATAAAGCGGGAGAAGGACCTGGCAAAGAAAGATGAGA TCGACAAGGAGAACAAGAAGGCTAGGACGGAATTCCTCGACACGAGAAAG AAGGGCTTGGCCGCCATGGAAGAGGCCAATATCCACGTAGGGGTGCTTTC TGCGAACATCAAAAGGTTGGTAGAGCTGAGAGAAAACAAGCTGCGGCGGC AGCTCGGGCGGAGAAGATCACGTCGCTGGAGAAGAAGCTAATGCTGGGCC TTGGCGACCCGGTGACCACGAAGGCGGAGCTCCATAGCCTACTTGACCAA
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig1155:71591..74240-

>mRNA_A-nodosum_M_contig1155.2.1 ID=mRNA_A-nodosum_M_contig1155.2.1|Name=mRNA_A-nodosum_M_contig1155.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=567bp|location=Sequence derived from alignment at A-nodosum_M_contig1155:71591..74240- (Ascophyllum nodosum dioecious)
ATGGCTGTAAATTTCGCAGTCTCTACGAAAGCGCCTATACTCCCAATACC
ACTCGACAACGAGATGCTGCATGGGCTTAGAAGGTTCAGCGATAGATTCG
CTGGCAAGCCGATGTCGCAGGCATCGTTGAAGGCACTTCAATGCGTGCCG
CTTGCGTGGGCTTGTCTTGCCGTGAGAGAGGCGGAGACAATGTCTGCAGC
GAAGCGTAACTTAGCGGCATCCAAAAGTATGCAGGAGATCGCGGTTCCGG
GGTGGATTAAGGTGATAGAGAAAGCGATGAACGACACGGAGGGCGCAATC
AGGATGCCAACTGGGTGGAAAGAGGCACTGTACTACACTACTCTCGGGAC
AGGCAAAGGGAAAAGGGAGACTTTTATGCAGAAGCCAGCGACCTGTATGA
CGAAGTTCAAACCCTTGAAAACAGAGTACACCAAAGGAGCTGCATGGTGG
TACGACACGCACGAGGACGTCGCCGCTAAACTTCCATCTGGCACAAGTCC
GAGGACGCACTTAAGGAATTGGAGAGGGACATGTTGCTTCAGTCCGTTAG
ATCCAGGAAAGACGTGA
back to top