mRNA_A-nodosum_M_contig1155.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig1155.1.1
Unique NamemRNA_A-nodosum_M_contig1155.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig1155.1.1 vs. uniprot
Match: A0A6H5KJD5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJD5_9PHAE)

HSP 1 Score: 150 bits (379), Expect = 1.400e-44
Identity = 68/92 (73.91%), Postives = 75/92 (81.52%), Query Frame = 1 
Query:    4 LKVLASGVTFKDVAAMSGMSISTAETSFHHFCEKFSEGLWETWVTLPVGDDLKKVEEICRKCGLPGAVGSLDCTHFKWDNCPWSEHRVHTGK 279
            LKVLASG  F+DVA+ S MS +TAETSFHHFCE FSEGLW+TWV LP GD+LKKVEEI RKCG PGA GS DCTHF+W  CP+SE   HTGK
Sbjct:   63 LKVLASGCCFQDVASFSLMSRTTAETSFHHFCENFSEGLWDTWVKLPRGDELKKVEEIYRKCGYPGATGSTDCTHFRWPGCPFSEENTHTGK 154
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BLAST of mRNA_A-nodosum_M_contig1155.1.1 vs. uniprot
Match: A0A6H5KT09_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT09_9PHAE)

HSP 1 Score: 147 bits (372), Expect = 5.710e-44
Identity = 64/83 (77.11%), Postives = 70/83 (84.34%), Query Frame = 1 
Query:   58 MSISTAETSFHHFCEKFSEGLWETWVTLPVGDDLKKVEEICRKCGLPGAVGSLDCTHFKWDNCPWSEHRVHTGKEGYPSVVVE 306
            MS +TAETSFHHFCEKFSEGLW+TWV LP GD+LKKVEEI RKCG PGA GS DCTHF+W  CP+SE   HTGKEGY S+VVE
Sbjct:    1 MSRTTAETSFHHFCEKFSEGLWDTWVKLPRGDELKKVEEIYRKCGYPGATGSTDCTHFRWSGCPFSEKNTHTGKEGYTSLVVE 83
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BLAST of mRNA_A-nodosum_M_contig1155.1.1 vs. uniprot
Match: A0A6H5L2S9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2S9_9PHAE)

HSP 1 Score: 144 bits (362), Expect = 1.870e-41
Identity = 68/100 (68.00%), Postives = 76/100 (76.00%), Query Frame = 1 
Query:    1 ALKVLASGVTFKDVAAMSGMSISTAETSFHHFCEKFSEGLWETWVTLPVGDDLKKVEEICRKCGLPGAVGSLDCTHFKWDNCPWSEHRVHTGKEGYPSVV 300
            AL+VLASG  F+DVA+ S  S +TAETSFHHFCEKFSEGLW+TWV L  GD LKKVEEI RK G PGA GS DCTHF+W  CP+SE   HT KE  P V+
Sbjct:   21 ALEVLASGCCFQDVASFSLTSRTTAETSFHHFCEKFSEGLWDTWVKLLRGDSLKKVEEIYRKYGYPGATGSTDCTHFRWPGCPFSEKNTHTCKEDLPGVI 120
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BLAST of mRNA_A-nodosum_M_contig1155.1.1 vs. uniprot
Match: A0A6H5K1K5_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1K5_9PHAE)

HSP 1 Score: 136 bits (343), Expect = 7.070e-39
Identity = 59/84 (70.24%), Postives = 70/84 (83.33%), Query Frame = 1 
Query:   58 MSISTAETSFHHFCEKFSEGLWETWVTLPVGDDLKKVEEICRKCGLPGAVGSLDCTHFKWDNCPWSEHRVHTGKEGYPSVVVEA 309
            MS++TAE SFHHFCEKFS  LW+TWV LPVGD+LK+VE + RK G PGA+GS DCTHF+W   P SE R++TGKEGYP+VVVEA
Sbjct:    1 MSVATAEKSFHHFCEKFSAALWDTWVKLPVGDELKEVERVFRKSGYPGAIGSTDCTHFRWPGGPSSEARMNTGKEGYPTVVVEA 84
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BLAST of mRNA_A-nodosum_M_contig1155.1.1 vs. uniprot
Match: A0A6H5JJM8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJM8_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 8.410e-39
Identity = 58/84 (69.05%), Postives = 70/84 (83.33%), Query Frame = 1 
Query:   58 MSISTAETSFHHFCEKFSEGLWETWVTLPVGDDLKKVEEICRKCGLPGAVGSLDCTHFKWDNCPWSEHRVHTGKEGYPSVVVEA 309
            MS++TAE SFHHFCEKFS  LW+TWV LP+GD+LK+VE + RK G PGA+GS DCTHF+W   P SE R++TGKEGYP+VVVEA
Sbjct:    1 MSVATAEKSFHHFCEKFSAALWDTWVKLPIGDELKEVERVFRKSGYPGAIGSTDCTHFRWPGGPSSEARMNTGKEGYPTVVVEA 84
[Close]
BLAST of mRNA_A-nodosum_M_contig1155.1.1 vs. uniprot
Match: A0A6H5KW69_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW69_9PHAE)

HSP 1 Score: 136 bits (343), Expect = 1.450e-38
Identity = 59/84 (70.24%), Postives = 70/84 (83.33%), Query Frame = 1 
Query:   58 MSISTAETSFHHFCEKFSEGLWETWVTLPVGDDLKKVEEICRKCGLPGAVGSLDCTHFKWDNCPWSEHRVHTGKEGYPSVVVEA 309
            MS++TAE SFHHFCEKFS  LW+TWV LPVGD+LK+VE + RK G PGA+GS DCTHF+W   P SE R++TGKEGYP+VVVEA
Sbjct:    1 MSVATAEKSFHHFCEKFSAALWDTWVKLPVGDELKEVERVFRKSGYPGAIGSTDCTHFRWPGGPSSEARMNTGKEGYPTVVVEA 84
[Close]
BLAST of mRNA_A-nodosum_M_contig1155.1.1 vs. uniprot
Match: A0A6H5K604_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K604_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 5.140e-37
Identity = 58/84 (69.05%), Postives = 69/84 (82.14%), Query Frame = 1 
Query:   58 MSISTAETSFHHFCEKFSEGLWETWVTLPVGDDLKKVEEICRKCGLPGAVGSLDCTHFKWDNCPWSEHRVHTGKEGYPSVVVEA 309
            MS++TAE SFHHFCEKFS  LW+TWV LPVGD+LK+VE + RK G PGA+ S DCTHF+W   P SE R++TGKEGYP+VVVEA
Sbjct:    1 MSVATAEKSFHHFCEKFSAALWDTWVKLPVGDELKEVERVFRKSGYPGAISSTDCTHFRWPGGPSSEARMNTGKEGYPTVVVEA 84
[Close]
BLAST of mRNA_A-nodosum_M_contig1155.1.1 vs. uniprot
Match: A0A6H5JY35_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY35_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 4.800e-33
Identity = 57/103 (55.34%), Postives = 69/103 (66.99%), Query Frame = 1 
Query:    4 LKVLASGVTFKDVAAMSGMSISTAETSFHHFCEKFSEGLWETWVTLPVGDDLKKVEEICRKCGLPGAVGSLDCTHFKWDNCPWSEHRVHTGKEGYPSVVVEAM 312
            L+ L  G  F DVA  S MS +TAE SFH FC  F+ GLW TW+ LP G+DL++VE   R  G PGAVGS+DCTH  W+ C +SE   H GKEGY +VV EA+
Sbjct:   10 LQALGRGNCFADVANFSLMSRTTAEQSFHRFCHCFAAGLWRTWIRLPEGEDLRRVESTYRSLGYPGAVGSIDCTHVPWERCAFSETTTHKGKEGYTTVVFEAI 112
[Close]
BLAST of mRNA_A-nodosum_M_contig1155.1.1 vs. uniprot
Match: A0A6H5K7N8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7N8_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 8.310e-32
Identity = 53/70 (75.71%), Postives = 58/70 (82.86%), Query Frame = 1 
Query:   97 CEKFSEGLWETWVTLPVGDDLKKVEEICRKCGLPGAVGSLDCTHFKWDNCPWSEHRVHTGKEGYPSVVVE 306
            CEKFSEGLW+TWV LP GD+LKKVEEI RKCG PGA GS DCTHF+W  CP+SE   HTGKEGY S+VVE
Sbjct:   90 CEKFSEGLWDTWVKLPRGDELKKVEEIYRKCGYPGATGSTDCTHFRWPGCPFSEKNTHTGKEGYTSLVVE 159
[Close]
BLAST of mRNA_A-nodosum_M_contig1155.1.1 vs. uniprot
Match: A0A6H5L0H2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0H2_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 1.250e-30
Identity = 57/103 (55.34%), Postives = 69/103 (66.99%), Query Frame = 1 
Query:    4 LKVLASGVTFKDVAAMSGMSISTAETSFHHFCEKFSEGLWETWVTLPVGDDLKKVEEICRKCGLPGAVGSLDCTHFKWDNCPWSEHRVHTGKEGYPSVVVEAM 312
            L+VL  G  F DVA  S MS +TAE SFH FC  F+ GLW TW+ LP G+ L++VE   R  G PGAVGS+DCTH  W+ C +SE   H GKEGY +VV EA+
Sbjct:  215 LQVLGRGNCFADVANFSLMSRTTAEQSFHRFCHCFAAGLWRTWIRLPEGEGLRRVESTYRSLGYPGAVGSIDCTHVPWERCAFSETTTHKGKEGYTTVVFEAI 317
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig1155.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KJD5_9PHAE1.400e-4473.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KT09_9PHAE5.710e-4477.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L2S9_9PHAE1.870e-4168.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1K5_9PHAE7.070e-3970.24Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJM8_9PHAE8.410e-3969.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KW69_9PHAE1.450e-3870.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K604_9PHAE5.140e-3769.05Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JY35_9PHAE4.800e-3355.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7N8_9PHAE8.310e-3275.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L0H2_9PHAE1.250e-3055.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig1155contigA-nodosum_M_contig1155:68398..68709 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog5297.GMQ_04368T0
PFAMsPlant_tran
Model size312
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.3e-16
EggNOG OGs28IUF@1|root,2QR5Z@2759|Eukaryota
DescriptionPlant transposon protein
Cds size312
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866558.978772-CDS-A-nodosum_M_contig1155:68397..687091680866558.978772-CDS-A-nodosum_M_contig1155:68397..68709Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig1155 68398..68709 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig1155.1.1prot_A-nodosum_M_contig1155.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig1155 68398..68709 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig1155.1.1

>prot_A-nodosum_M_contig1155.1.1 ID=prot_A-nodosum_M_contig1155.1.1|Name=mRNA_A-nodosum_M_contig1155.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=104bp
ALKVLASGVTFKDVAAMSGMSISTAETSFHHFCEKFSEGLWETWVTLPVG
DDLKKVEEICRKCGLPGAVGSLDCTHFKWDNCPWSEHRVHTGKEGYPSVV
VEAM
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mRNA from alignment at A-nodosum_M_contig1155:68398..68709+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig1155.1.1 ID=mRNA_A-nodosum_M_contig1155.1.1|Name=mRNA_A-nodosum_M_contig1155.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=312bp|location=Sequence derived from alignment at A-nodosum_M_contig1155:68398..68709+ (Ascophyllum nodosum dioecious)
GCGTTAAAAGTGTTGGCTTCAGGAGTCACCTTCAAAGATGTCGCGGCCAT
GTCTGGAATGAGCATCTCCACGGCTGAGACTTCCTTCCACCATTTCTGCG
AAAAATTTTCGGAGGGCCTTTGGGAGACATGGGTAACGCTTCCCGTGGGA
GATGACCTCAAGAAGGTGGAAGAAATCTGCCGGAAGTGTGGTTTGCCTGG
GGCAGTGGGCTCACTGGACTGCACCCACTTTAAGTGGGACAACTGTCCGT
GGTCAGAACACCGTGTCCATACCGGCAAGGAGGGTTATCCCTCTGTCGTG
GTGGAGGCGATG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig1155:68398..68709+

>mRNA_A-nodosum_M_contig1155.1.1 ID=mRNA_A-nodosum_M_contig1155.1.1|Name=mRNA_A-nodosum_M_contig1155.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=312bp|location=Sequence derived from alignment at A-nodosum_M_contig1155:68398..68709+ (Ascophyllum nodosum dioecious)
GCGTTAAAAGTGTTGGCTTCAGGAGTCACCTTCAAAGATGTCGCGGCCAT
GTCTGGAATGAGCATCTCCACGGCTGAGACTTCCTTCCACCATTTCTGCG
AAAAATTTTCGGAGGGCCTTTGGGAGACATGGGTAACGCTTCCCGTGGGA
GATGACCTCAAGAAGGTGGAAGAAATCTGCCGGAAGTGTGGTTTGCCTGG
GGCAGTGGGCTCACTGGACTGCACCCACTTTAAGTGGGACAACTGTCCGT
GGTCAGAACACCGTGTCCATACCGGCAAGGAGGGTTATCCCTCTGTCGTG
GTGGAGGCGATG
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