mRNA_A-nodosum_M_contig11549.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig11549.1.1
Unique NamemRNA_A-nodosum_M_contig11549.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig11549.1.1 vs. uniprot
Match: A0A6H5JYE2_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYE2_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 1.030e-23
Identity = 46/92 (50.00%), Postives = 65/92 (70.65%), Query Frame = 1 
Query:    1 RVLLRIIGAQRKRSDHRMTSYNRALEITGCESIETTLRTRRLLWAGTLLRMSGGRLSKRIVFGNLEGAVRRGRGGKEKEWTDCVQSDIRAFG 276
            R+LLR+IG +RK+  +R  SY + L+   C+S+E T+R RRLL+AG+L R   GRL KR++FG L G  +R RGG+E+ W  CV  D++AFG
Sbjct:   27 RLLLRVIGYKRKKDTYRQLSYAQTLKRVECQSVEATIRQRRLLFAGSLARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLKAFG 118
[Close]
BLAST of mRNA_A-nodosum_M_contig11549.1.1 vs. uniprot
Match: A0A6H5JAH7_9PHAE (Reverse transcriptase domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAH7_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 3.540e-23
Identity = 47/92 (51.09%), Postives = 63/92 (68.48%), Query Frame = 1 
Query:    1 RVLLRIIGAQRKRSDHRMTSYNRALEITGCESIETTLRTRRLLWAGTLLRMSGGRLSKRIVFGNLEGAVRRGRGGKEKEWTDCVQSDIRAFG 276
            R+LLR+IG +RK+  +R  SY + L    CES+E T+R RRLL+AG L R   GRL KR++FG L G  +R RGG+E+ W  CV  D++AFG
Sbjct:  159 RLLLRVIGYKRKKDTYRQLSYAQTLRRVECESVEPTIRQRRLLFAGALARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLKAFG 250
[Close]
BLAST of mRNA_A-nodosum_M_contig11549.1.1 vs. uniprot
Match: A0A6H5JLT1_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLT1_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 1.990e-21
Identity = 46/92 (50.00%), Postives = 62/92 (67.39%), Query Frame = 1 
Query:    1 RVLLRIIGAQRKRSDHRMTSYNRALEITGCESIETTLRTRRLLWAGTLLRMSGGRLSKRIVFGNLEGAVRRGRGGKEKEWTDCVQSDIRAFG 276
            R+L R+IG + K+  +R  SY R LE   C+S+E T+R RRLL+AG L R   GRL KR++FG L G  +R RGG+E+ W  CV  D++AFG
Sbjct:  422 RLLFRVIGYKLKKDTYRQLSYPRTLERVECQSVEATIRQRRLLFAGALARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLKAFG 513
[Close]
BLAST of mRNA_A-nodosum_M_contig11549.1.1 vs. uniprot
Match: A0A6H5KS82_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS82_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 2.950e-21
Identity = 46/92 (50.00%), Postives = 63/92 (68.48%), Query Frame = 1 
Query:    1 RVLLRIIGAQRKRSDHRMTSYNRALEITGCESIETTLRTRRLLWAGTLLRMSGGRLSKRIVFGNLEGAVRRGRGGKEKEWTDCVQSDIRAFG 276
            R+LLR+IG +RK+  +R  SY + L+   C+S+E T+R RRLL+AG L R   GRL KR++FG L G  +R RGG+E+ W  CV  D+ AFG
Sbjct:  511 RLLLRVIGYKRKKDTYRQLSYAQTLKRFECQSVEATIRQRRLLFAGALARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLNAFG 602
[Close]
BLAST of mRNA_A-nodosum_M_contig11549.1.1 vs. uniprot
Match: A0A6H5K1X4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1X4_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 4.890e-21
Identity = 45/92 (48.91%), Postives = 63/92 (68.48%), Query Frame = 1 
Query:    1 RVLLRIIGAQRKRSDHRMTSYNRALEITGCESIETTLRTRRLLWAGTLLRMSGGRLSKRIVFGNLEGAVRRGRGGKEKEWTDCVQSDIRAFG 276
            R+LLR+IG +RK+  +R  SY + L+   C+S+E T+R RRLL+AG L R   GRL KR++ G L G  +R RGG+E+ W  CV  D++AFG
Sbjct:  183 RLLLRVIGYKRKKDTYRQLSYAQTLKRVECQSVEATIRQRRLLFAGALARQPDGRLPKRLMLGELAGGEKRRRGGQEQNWPKCVLDDLKAFG 274
[Close]
BLAST of mRNA_A-nodosum_M_contig11549.1.1 vs. uniprot
Match: A0A6H5JLH5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLH5_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 1.380e-20
Identity = 43/91 (47.25%), Postives = 62/91 (68.13%), Query Frame = 1 
Query:    1 RVLLRIIGAQRKRSDHRMTSYNRALEITGCESIETTLRTRRLLWAGTLLRMSGGRLSKRIVFGNLEGAVRRGRGGKEKEWTDCVQSDIRAF 273
            R+LLR+IG +RKR  +R  SY +AL+  GC+S+E T+R RRLL+AG + R   GRL KR++FG L G    G+G  E+ W  C++ D++ F
Sbjct:  138 RLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWLTCLKDDMKMF 228
[Close]
BLAST of mRNA_A-nodosum_M_contig11549.1.1 vs. uniprot
Match: A0A6H5KLX9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLX9_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 1.470e-20
Identity = 45/100 (45.00%), Postives = 65/100 (65.00%), Query Frame = 1 
Query:    1 RVLLRIIGAQRKRSDHRMTSYNRALEITGCESIETTLRTRRLLWAGTLLRMSGGRLSKRIVFGNLEGAVRRGRGGKEKEWTDCVQSDIRAFG---IAGDW 291
            R+LLR+IG +RKR  +R  SY +AL+  GC+S+E T+R RRLL+AG + R   GRL KR++FG L G    G+G  E+ W  C++ D++ F    + G W
Sbjct:  189 RLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWLTCLKDDMKMFEARELRGSW 288
[Close]
BLAST of mRNA_A-nodosum_M_contig11549.1.1 vs. uniprot
Match: A0A6H5KA81_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA81_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 2.560e-20
Identity = 44/91 (48.35%), Postives = 62/91 (68.13%), Query Frame = 1 
Query:    1 RVLLRIIGAQRKRSDHRMTSYNRALEITGCESIETTLRTRRLLWAGTLLRMSGGRLSKRIVFGNLEGAVRRGRGGKEKEWTDCVQSDIRAF 273
            R+LLR+IG +RKR  +R  SY +AL+  GC+S+E T+R RRLL+AG + R   GRL KR++FG L G    GRG  E+ W  C++ D++ F
Sbjct:  440 RLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGENPGRGSPEQNWLICLKDDLKMF 530
[Close]
BLAST of mRNA_A-nodosum_M_contig11549.1.1 vs. uniprot
Match: A0A6H5K4M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4M0_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 2.690e-20
Identity = 44/91 (48.35%), Postives = 62/91 (68.13%), Query Frame = 1 
Query:    1 RVLLRIIGAQRKRSDHRMTSYNRALEITGCESIETTLRTRRLLWAGTLLRMSGGRLSKRIVFGNLEGAVRRGRGGKEKEWTDCVQSDIRAF 273
            R+LLR+IG +RKR  +R  SY +AL+  GC+S+E T+R RRLL+AG + R   GRL KR++FG L G    GRG  E+ W  C++ D++ F
Sbjct:  138 RLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGENPGRGSPEQNWLICLKDDLKMF 228
[Close]
BLAST of mRNA_A-nodosum_M_contig11549.1.1 vs. uniprot
Match: A0A6H5K7U5_9PHAE (Reverse transcriptase domain-containing protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7U5_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 3.630e-20
Identity = 44/91 (48.35%), Postives = 62/91 (68.13%), Query Frame = 1 
Query:    1 RVLLRIIGAQRKRSDHRMTSYNRALEITGCESIETTLRTRRLLWAGTLLRMSGGRLSKRIVFGNLEGAVRRGRGGKEKEWTDCVQSDIRAF 273
            R+LLR+IG +RKR  +R  SY +AL+  GC+S+E T+R RRLL+AG + R   GRL KR++FG L G    GRG  E+ W  C++ D++ F
Sbjct:  937 RLLLRVIGYRRKRGTYRQLSYAQALKRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGRGNPEQNWLTCLKDDMKMF 1027
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig11549.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JYE2_9PHAE1.030e-2350.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JAH7_9PHAE3.540e-2351.09Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JLT1_9PHAE1.990e-2150.00Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KS82_9PHAE2.950e-2150.00Reverse transcriptase domain-containing protein (F... [more]
A0A6H5K1X4_9PHAE4.890e-2148.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JLH5_9PHAE1.380e-2047.25Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLX9_9PHAE1.470e-2045.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KA81_9PHAE2.560e-2048.35Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K4M0_9PHAE2.690e-2048.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7U5_9PHAE3.630e-2048.35Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig11549contigA-nodosum_M_contig11549:6796..7089 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog7897.ENSLACP00000000641
Model size294
Max annot lvl7897.ENSLACP00000000641|-
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.85e-08
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota
DescriptionRibonuclease H protein
Cds size294
COG categoryE
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866558.9515772-CDS-A-nodosum_M_contig11549:6795..70891680866558.9515772-CDS-A-nodosum_M_contig11549:6795..7089Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig11549 6796..7089 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig11549.1.1prot_A-nodosum_M_contig11549.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig11549 6796..7089 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig11549.1.1

>prot_A-nodosum_M_contig11549.1.1 ID=prot_A-nodosum_M_contig11549.1.1|Name=mRNA_A-nodosum_M_contig11549.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=98bp
RVLLRIIGAQRKRSDHRMTSYNRALEITGCESIETTLRTRRLLWAGTLLR
MSGGRLSKRIVFGNLEGAVRRGRGGKEKEWTDCVQSDIRAFGIAGDWK
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mRNA from alignment at A-nodosum_M_contig11549:6796..7089-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig11549.1.1 ID=mRNA_A-nodosum_M_contig11549.1.1|Name=mRNA_A-nodosum_M_contig11549.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=294bp|location=Sequence derived from alignment at A-nodosum_M_contig11549:6796..7089- (Ascophyllum nodosum dioecious)
CGAGTCTTGCTTCGTATCATCGGGGCACAGCGCAAGAGATCAGACCATCG
GATGACTTCGTACAACCGTGCCCTTGAGATAACCGGGTGTGAAAGCATTG
AGACGACGTTGCGAACGAGAAGACTTTTGTGGGCGGGGACGCTCCTGCGA
ATGAGCGGCGGGCGGCTGTCGAAGCGAATCGTTTTCGGAAACCTTGAGGG
TGCAGTACGGAGGGGACGGGGTGGGAAGGAGAAAGAGTGGACCGATTGCG
TCCAGAGCGACATCCGGGCGTTTGGCATAGCGGGGGACTGGAAA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig11549:6796..7089-

>mRNA_A-nodosum_M_contig11549.1.1 ID=mRNA_A-nodosum_M_contig11549.1.1|Name=mRNA_A-nodosum_M_contig11549.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=294bp|location=Sequence derived from alignment at A-nodosum_M_contig11549:6796..7089- (Ascophyllum nodosum dioecious)
CGAGTCTTGCTTCGTATCATCGGGGCACAGCGCAAGAGATCAGACCATCG
GATGACTTCGTACAACCGTGCCCTTGAGATAACCGGGTGTGAAAGCATTG
AGACGACGTTGCGAACGAGAAGACTTTTGTGGGCGGGGACGCTCCTGCGA
ATGAGCGGCGGGCGGCTGTCGAAGCGAATCGTTTTCGGAAACCTTGAGGG
TGCAGTACGGAGGGGACGGGGTGGGAAGGAGAAAGAGTGGACCGATTGCG
TCCAGAGCGACATCCGGGCGTTTGGCATAGCGGGGGACTGGAAA
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