mRNA_A-nodosum_M_contig11532.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig11532.2.1
Unique NamemRNA_A-nodosum_M_contig11532.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig11532.2.1 vs. uniprot
Match: D7FRH1_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH1_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 5.600e-15
Identity = 38/56 (67.86%), Postives = 43/56 (76.79%), Query Frame = 1 
Query:    1 YLRADYNLSCKTTTHTYYRIYAGFMLLVYAIGIPLLYASILWTKRHLLNPALAAAA 168
            YLRADY+LSCKT  H YYRIYAG M++VY IGIPLLYA ILW  R  LNP + + A
Sbjct:  932 YLRADYSLSCKTDKHMYYRIYAGIMIVVYPIGIPLLYAFILWINRDSLNPRVRSEA 987
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BLAST of mRNA_A-nodosum_M_contig11532.2.1 vs. uniprot
Match: A0A6H5JS31_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS31_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 5.640e-15
Identity = 38/56 (67.86%), Postives = 43/56 (76.79%), Query Frame = 1 
Query:    1 YLRADYNLSCKTTTHTYYRIYAGFMLLVYAIGIPLLYASILWTKRHLLNPALAAAA 168
            YLRADY+LSCKT  H Y+RIYAG M+LVY IGIPLLYA ILW  R  LNP + + A
Sbjct: 1274 YLRADYSLSCKTDKHMYFRIYAGIMILVYPIGIPLLYAFILWINRESLNPRVRSEA 1329
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BLAST of mRNA_A-nodosum_M_contig11532.2.1 vs. uniprot
Match: A0A6H5JCK8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK8_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 1.940e-14
Identity = 35/50 (70.00%), Postives = 41/50 (82.00%), Query Frame = 1 
Query:    1 YLRADYNLSCKTTTHTYYRIYAGFMLLVYAIGIPLLYASILWTKRHLLNP 150
            YLRADY+LSC T THT+Y++YAG M++VY IGIPLLYA ILW  R  LNP
Sbjct:  758 YLRADYSLSCNTATHTWYKVYAGVMIVVYPIGIPLLYAFILWINRESLNP 807
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BLAST of mRNA_A-nodosum_M_contig11532.2.1 vs. uniprot
Match: D7FRG6_ECTSI (Polymorphic membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRG6_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 2.670e-14
Identity = 35/50 (70.00%), Postives = 41/50 (82.00%), Query Frame = 1 
Query:    1 YLRADYNLSCKTTTHTYYRIYAGFMLLVYAIGIPLLYASILWTKRHLLNP 150
            YLRADY+LSC T THT+Y++YAG M++VY IGIPLLYA ILW  R  LNP
Sbjct: 1263 YLRADYSLSCNTDTHTWYKVYAGIMIVVYPIGIPLLYAFILWINRDSLNP 1312
[Close]
BLAST of mRNA_A-nodosum_M_contig11532.2.1 vs. uniprot
Match: D7FRH4_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH4_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 3.910e-12
Identity = 31/56 (55.36%), Postives = 40/56 (71.43%), Query Frame = 1 
Query:    1 YLRADYNLSCKTTTHTYYRIYAGFMLLVYAIGIPLLYASILWTKRHLLNPALAAAA 168
            YLRADY++ C T  H +Y++YAG M++VY +GIPLLYA ILW  R  LNP +   A
Sbjct: 1246 YLRADYSIQCHTDKHEWYKVYAGVMIMVYPVGIPLLYAFILWQNRESLNPRVKTGA 1301
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BLAST of mRNA_A-nodosum_M_contig11532.2.1 vs. uniprot
Match: D7FRH0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRH0_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 5.350e-12
Identity = 32/50 (64.00%), Postives = 37/50 (74.00%), Query Frame = 1 
Query:    1 YLRADYNLSCKTTTHTYYRIYAGFMLLVYAIGIPLLYASILWTKRHLLNP 150
            +LRADY +SCKT  H +Y +YAG M+ VY IGIPLLYA ILW  R  LNP
Sbjct: 1329 FLRADYGISCKTNKHAWYEVYAGVMIAVYPIGIPLLYAFILWRNRDSLNP 1378
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BLAST of mRNA_A-nodosum_M_contig11532.2.1 vs. uniprot
Match: A0A6H5JU27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU27_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 7.600e-10
Identity = 30/59 (50.85%), Postives = 43/59 (72.88%), Query Frame = 1 
Query:    1 YLRADYNLSCKTTTHTYYRIYAGFMLLVYAIGIPLLYASILWTKRHLLNPA--LAAAAR 171
            YLRADY + C +  H  +++YAGFM+LVY IGIP+ +A +LW KR ++NP   + +AAR
Sbjct:  216 YLRADYAIDCDSDRHKAFKLYAGFMILVYPIGIPVAFAVMLWRKRSMINPPKDILSAAR 274
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BLAST of mRNA_A-nodosum_M_contig11532.2.1 vs. uniprot
Match: A0A835YXM1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXM1_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 2.210e-9
Identity = 28/44 (63.64%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:    4 LRADYNLSCKTTTHTYYRIYAGFMLLVYAIGIPLLYASILWTKR 135
            LRADY+LSC T+TH  Y +YAG M+LVY IGIP LY ++LW +R
Sbjct:    1 LRADYSLSCDTSTHKAYCVYAGVMILVYPIGIPALYMALLWRQR 44
[Close]
BLAST of mRNA_A-nodosum_M_contig11532.2.1 vs. uniprot
Match: D8LRF6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRF6_ECTSI)

HSP 1 Score: 62.4 bits (150), Expect = 2.610e-9
Identity = 29/59 (49.15%), Postives = 42/59 (71.19%), Query Frame = 1 
Query:    1 YLRADYNLSCKTTTHTYYRIYAGFMLLVYAIGIPLLYASILWTKRHLLNPA--LAAAAR 171
            YLRADY + C +  H  +++YAG M+LVY IGIP+ +A +LW KR ++NP   + +AAR
Sbjct:   66 YLRADYGIDCDSDRHKAFKLYAGLMILVYPIGIPVAFAVMLWRKRSMINPPKDILSAAR 124
[Close]
BLAST of mRNA_A-nodosum_M_contig11532.2.1 vs. uniprot
Match: D8LRF9_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRF9_ECTSI)

HSP 1 Score: 61.2 bits (147), Expect = 6.990e-9
Identity = 31/53 (58.49%), Postives = 37/53 (69.81%), Query Frame = 1 
Query:    1 YLRADYNLSCKTTTHTYYRIYAGFMLLVYAIGIPLLYASILWTKRHLLNPALA 159
            +LRADY+L C T  H  YR YAG M+LVY IGIPLLYA +L+  RH + P  A
Sbjct: 1399 FLRADYSLECYTPEHKLYRGYAGIMILVYPIGIPLLYAWLLFRHRHRIYPKQA 1451
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig11532.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRH1_ECTSI5.600e-1567.86Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
A0A6H5JS31_9PHAE5.640e-1567.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCK8_9PHAE1.940e-1470.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRG6_ECTSI2.670e-1470.00Polymorphic membrane protein n=1 Tax=Ectocarpus si... [more]
D7FRH4_ECTSI3.910e-1255.36Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
D7FRH0_ECTSI5.350e-1264.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JU27_9PHAE7.600e-1050.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YXM1_9STRA2.210e-963.64Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
D8LRF6_ECTSI2.610e-949.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LRF9_ECTSI6.990e-958.49Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig11532contigA-nodosum_M_contig11532:7990..8638 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LRF6
Model size281
Max annot lvl2880.D8LRF6|-
Hectar predicted targeting categorysignal anchor
Exons2
Evalue4.27e-10
EggNOG OGs2D43J@1|root,2STRI@2759|Eukaryota
Cds size279
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866557.5838454-CDS-A-nodosum_M_contig11532:7989..80701680866557.5838454-CDS-A-nodosum_M_contig11532:7989..8070Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig11532 7990..8070 +
1680866557.606421-CDS-A-nodosum_M_contig11532:8440..86381680866557.606421-CDS-A-nodosum_M_contig11532:8440..8638Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig11532 8441..8638 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig11532.2.1prot_A-nodosum_M_contig11532.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig11532 7990..8638 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig11532.2.1

>prot_A-nodosum_M_contig11532.2.1 ID=prot_A-nodosum_M_contig11532.2.1|Name=mRNA_A-nodosum_M_contig11532.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=93bp
YLRADYNLSCKTTTHTYYRIYAGFMLLVYAIGIPLLYASILWTKRHLLNP
ALAAAARAEQEQQTKEGKEGDQDIEGVGQSKTDGQRKKDLSLL
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mRNA from alignment at A-nodosum_M_contig11532:7990..8638+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig11532.2.1 ID=mRNA_A-nodosum_M_contig11532.2.1|Name=mRNA_A-nodosum_M_contig11532.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=649bp|location=Sequence derived from alignment at A-nodosum_M_contig11532:7990..8638+ (Ascophyllum nodosum dioecious)
TACCTCAGGGCGGACTACAACTTGTCTTGTAAAACAACCACCCACACCTA
CTACAGGATCTACGCAGGCTTCATGCTGCTGGTGAGCGGCCTGCCTGTAC
TGTCCCTTAATAAGGGGCGTGTGTGCTGGCATAGATGATCTCGAGTCTCT
GGCCTAGAAGATATGAGGAAGAATGCCGCCGCGCGGCGAATAGTTGATGT
TCAGACGATACGGTGTAGGGAATATAACTTTTTCATTCAAAATCCCCGAG
TTCAAATAGACACGGTTATAATATAACCCATGTCAGGGGAAATTTTATAC
ATTTCCTGGTGAAAATAAGGAGGTCACCATTTCCTAGTTATCATTCCCTC
ATTACCATCAGACAACCGTGTCTTTCCTGCCGTTCGATCGTTTGCCTCGG
CACTTTTCGCCTGACCCGTTGCGCCTAACCTACCCATCACACGTCACACA
GGTATACGCTATCGGCATCCCCCTCTTGTACGCCTCCATTCTCTGGACGA
AGCGGCACCTACTCAACCCCGCGCTGGCTGCTGCGGCAAGGGCCGAGCAA
GAGCAGCAGACTAAGGAAGGCAAAGAGGGTGATCAAGATATAGAGGGCGT
CGGTCAAAGCAAAACGGACGGTCAGAGGAAGAAGGACCTCTCGCTCCTG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig11532:7990..8638+

>mRNA_A-nodosum_M_contig11532.2.1 ID=mRNA_A-nodosum_M_contig11532.2.1|Name=mRNA_A-nodosum_M_contig11532.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=279bp|location=Sequence derived from alignment at A-nodosum_M_contig11532:7990..8638+ (Ascophyllum nodosum dioecious)
TACCTCAGGGCGGACTACAACTTGTCTTGTAAAACAACCACCCACACCTA
CTACAGGATCTACGCAGGCTTCATGCTGCTGGTATACGCTATCGGCATCC
CCCTCTTGTACGCCTCCATTCTCTGGACGAAGCGGCACCTACTCAACCCC
GCGCTGGCTGCTGCGGCAAGGGCCGAGCAAGAGCAGCAGACTAAGGAAGG
CAAAGAGGGTGATCAAGATATAGAGGGCGTCGGTCAAAGCAAAACGGACG
GTCAGAGGAAGAAGGACCTCTCGCTCCTG
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