mRNA_A-nodosum_M_contig11532.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig11532.1.1
Unique NamemRNA_A-nodosum_M_contig11532.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig11532.1.1 vs. uniprot
Match: D7FRH4_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH4_ECTSI)

HSP 1 Score: 137 bits (346), Expect = 1.460e-35
Identity = 62/105 (59.05%), Postives = 77/105 (73.33%), Query Frame = 1
Query:    1 AFQYAVPVVGEELVESLECRQCADIEDAKGVDCDEPGATLASLPIRPGYWRASEALLTIHPCLHSDACKGATAMTSPNDYCADGYQGPLCAVCTRGFGRGAGYSC 315
            AF+YA+PV  E    +  C QC +I+ A+G+DC+ PGATLASLPIR GYWR+S   L+IH C+H  AC GAT ++S  DYC +GYQGP C VCT GFGRGAG +C
Sbjct:  856 AFEYAMPVDDENA--AFSCEQCVNIDGAEGLDCELPGATLASLPIREGYWRSSRESLSIHQCVHHTACVGATQISSAQDYCGEGYQGPYCTVCTEGFGRGAGNTC 958          
BLAST of mRNA_A-nodosum_M_contig11532.1.1 vs. uniprot
Match: D7FRH3_ECTSI (Polymorphic membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH3_ECTSI)

HSP 1 Score: 136 bits (342), Expect = 5.070e-35
Identity = 62/105 (59.05%), Postives = 75/105 (71.43%), Query Frame = 1
Query:    1 AFQYAVPVVGEELVESLECRQCADIEDAKGVDCDEPGATLASLPIRPGYWRASEALLTIHPCLHSDACKGATAMTSPNDYCADGYQGPLCAVCTRGFGRGAGYSC 315
            AF+YA+PV GE+   +  C QCA +  A+G+DC+ PGATLASLP+R GYWR+    LTIH C  S AC GA  ++S  DYC +GYQGP CAVC  GFGRGAG SC
Sbjct:  849 AFEYAMPVDGEDT--TFSCEQCASVNGAEGLDCEIPGATLASLPVREGYWRSGGESLTIHQCSPSSACVGAAQISSAQDYCGEGYQGPYCAVCAEGFGRGAGNSC 951          
BLAST of mRNA_A-nodosum_M_contig11532.1.1 vs. uniprot
Match: D7FRH1_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH1_ECTSI)

HSP 1 Score: 127 bits (320), Expect = 4.670e-32
Identity = 57/112 (50.89%), Postives = 78/112 (69.64%), Query Frame = 1
Query:    1 AFQYAVPVVGEEL-------VESLECRQCADIEDAKGVDCDEPGATLASLPIRPGYWRASEALLTIHPCLHSDACKGATAMTSPNDYCADGYQGPLCAVCTRGFGRGAGYSC 315
            AF+YA+PV  E           S+ C QCA+++ A+G+DC+ PGATLAS+P+R GYWR+S+  L +H CLHSDAC GAT ++S +DYC D Y+GP CAVC  G   G+ ++C
Sbjct:  504 AFEYAMPVDSEXXXXXXXPDAASVVCLQCANLDGAEGLDCESPGATLASMPVREGYWRSSQESLVVHGCLHSDACAGATQISSSDDYCKDCYEGPYCAVCAEGCCEGSSHTC 615          
BLAST of mRNA_A-nodosum_M_contig11532.1.1 vs. uniprot
Match: A0A6H5JS31_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS31_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 4.710e-32
Identity = 55/105 (52.38%), Postives = 76/105 (72.38%), Query Frame = 1
Query:    1 AFQYAVPVVGEELVESLECRQCADIEDAKGVDCDEPGATLASLPIRPGYWRASEALLTIHPCLHSDACKGATAMTSPNDYCADGYQGPLCAVCTRGFGRGAGYSC 315
            AF+YA+PV G++      C QCA+ + A+G+DC+ PGATLASLP+R GYWR+S+  L +H CL+SDAC G T ++S +DYC D Y+GP CAVC  G   G+ ++C
Sbjct:  856 AFEYAMPVDGDDDDNDPVCLQCANFDGAEGLDCESPGATLASLPVREGYWRSSQESLVVHGCLNSDACAGGTQISSSDDYCKDCYEGPYCAVCAEGCCEGSSHTC 960          
BLAST of mRNA_A-nodosum_M_contig11532.1.1 vs. uniprot
Match: D7FRH0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRH0_ECTSI)

HSP 1 Score: 126 bits (317), Expect = 1.200e-31
Identity = 59/105 (56.19%), Postives = 75/105 (71.43%), Query Frame = 1
Query:    1 AFQYAVPVVGEELVESLECRQCADIEDAKGVDCDEPGATLASLPIRPGYWRASEALLTIHPCLHSDACKGATAMTSPNDYCADGYQGPLCAVCTRGFGRGAGYSC 315
            AF+YA+P  GEE V    C QC  ++ A+GVDC+ PGAT  SLP+R G+WR+SE  L IH CLHSDAC GAT + + +DYC  GY+GP CAVC  G+G+G G +C
Sbjct:  891 AFEYAMPD-GEEQVT---CEQCVLLDGAEGVDCELPGATQTSLPVRAGHWRSSEESLVIHGCLHSDACVGATEIVTSDDYCDGGYEGPYCAVCAEGYGKGVGNTC 991          
BLAST of mRNA_A-nodosum_M_contig11532.1.1 vs. uniprot
Match: A0A6H5JCK8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK8_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 1.040e-30
Identity = 53/105 (50.48%), Postives = 77/105 (73.33%), Query Frame = 1
Query:    1 AFQYAVPVVGEELVESLECRQCADIEDAKGVDCDEPGATLASLPIRPGYWRASEALLTIHPCLHSDACKGATAMTSPNDYCADGYQGPLCAVCTRGFGRGAGYSC 315
            AF+YAVPV G++   ++ C QC  I+ A+GVDC+ PGATLASLP+R GYWR+ +   T+  C+H+++C GAT +++ +DYC+ GY+GP CA C  G+G G G +C
Sbjct:  366 AFEYAVPVDGDDDT-AVSCEQCVVIDGAEGVDCELPGATLASLPVREGYWRSGKESATVLACIHAESCAGATHVSTSDDYCSSGYEGPYCASCQAGYGTGIGNTC 469          
BLAST of mRNA_A-nodosum_M_contig11532.1.1 vs. uniprot
Match: D7FRG6_ECTSI (Polymorphic membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRG6_ECTSI)

HSP 1 Score: 124 bits (310), Expect = 1.050e-30
Identity = 53/105 (50.48%), Postives = 76/105 (72.38%), Query Frame = 1
Query:    1 AFQYAVPVVGEELVESLECRQCADIEDAKGVDCDEPGATLASLPIRPGYWRASEALLTIHPCLHSDACKGATAMTSPNDYCADGYQGPLCAVCTRGFGRGAGYSC 315
            AF+YAVPV G++   ++ C QC  I+ A+GVDC+ PGATLASLP+R GYWR+ +   T+  C+H+++C GAT +++  DYC+ GY+GP CA C  G+G G G +C
Sbjct:  815 AFEYAVPVDGDDDT-AVSCEQCVAIDGAEGVDCELPGATLASLPVREGYWRSGKESSTVLACIHAESCAGATQVSTAEDYCSSGYEGPYCASCQAGYGTGIGNTC 918          
BLAST of mRNA_A-nodosum_M_contig11532.1.1 vs. uniprot
Match: A0A6H5JRA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRA9_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 2.470e-22
Identity = 45/92 (48.91%), Postives = 59/92 (64.13%), Query Frame = 1
Query:   43 ESLECRQCADIE-DAKGVDCDEPGATLASLPIRPGYWRASEALLTIHPCLHSDACKGATAMTSPNDYCADGYQGPLCAVCTRGFGRGAGYSC 315
            ES  C  C D+  D  GV+CDE GAT  +LP++PGYWRAS   + I  C + DAC+G + + S  +YC  GY+GP CAVC  G+GRG   +C
Sbjct: 1062 ESACCELCTDVGGDEDGVNCDENGATTRTLPVQPGYWRASLDSVYIRQCFNEDACQGGSIVASEQEYCNAGYEGPQCAVCAPGYGRGVANAC 1153          
BLAST of mRNA_A-nodosum_M_contig11532.1.1 vs. uniprot
Match: D7G0B0_ECTSI (Adhesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0B0_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 1.170e-21
Identity = 43/88 (48.86%), Postives = 57/88 (64.77%), Query Frame = 1
Query:   55 CRQCADIE-DAKGVDCDEPGATLASLPIRPGYWRASEALLTIHPCLHSDACKGATAMTSPNDYCADGYQGPLCAVCTRGFGRGAGYSC 315
            C  C D++ D  GV+CDE GAT  +LPI+ GYWRAS   + I  C + DAC+G + + S  +YC  GY+GP CAVC  G+GRG   +C
Sbjct:  955 CELCTDVDGDEDGVNCDENGATTRTLPIQSGYWRASLDSVYIRQCFNEDACQGGSIVASEQEYCNAGYEGPQCAVCASGYGRGVANAC 1042          
BLAST of mRNA_A-nodosum_M_contig11532.1.1 vs. uniprot
Match: D7G0A8_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0A8_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 2.940e-21
Identity = 41/88 (46.59%), Postives = 57/88 (64.77%), Query Frame = 1
Query:   55 CRQCADIE-DAKGVDCDEPGATLASLPIRPGYWRASEALLTIHPCLHSDACKGATAMTSPNDYCADGYQGPLCAVCTRGFGRGAGYSC 315
            C  C D++ D  GVDC++ GAT  +LP++ GYWRAS   + I  C + DAC+G + + S  +YC  GY+GP CAVC  G+GRG   +C
Sbjct:  605 CELCTDLDGDEDGVDCEDMGATTRTLPVQSGYWRASLDSVYIRQCFNEDACRGGSIVASEQEYCNAGYEGPQCAVCASGYGRGVANAC 692          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig11532.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRH4_ECTSI1.460e-3559.05Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
D7FRH3_ECTSI5.070e-3559.05Polymorphic membrane protein n=1 Tax=Ectocarpus si... [more]
D7FRH1_ECTSI4.670e-3250.89Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
A0A6H5JS31_9PHAE4.710e-3252.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRH0_ECTSI1.200e-3156.19Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JCK8_9PHAE1.040e-3050.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRG6_ECTSI1.050e-3050.48Polymorphic membrane protein n=1 Tax=Ectocarpus si... [more]
A0A6H5JRA9_9PHAE2.470e-2248.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0B0_ECTSI1.170e-2148.86Adhesin-like protein n=1 Tax=Ectocarpus siliculosu... [more]
D7G0A8_ECTSI2.940e-2146.59Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig11532contigA-nodosum_M_contig11532:6026..6655 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LRF9
PFAMsBeta_helix,Chlam_PMP
Model size317
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.46e-24
EggNOG OGs2BFIX@1|root,2S176@2759|Eukaryota
Cds size315
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866557.538041-CDS-A-nodosum_M_contig11532:6025..62901680866557.538041-CDS-A-nodosum_M_contig11532:6025..6290Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig11532 6026..6290 +
1680866557.5501475-CDS-A-nodosum_M_contig11532:6604..66541680866557.5501475-CDS-A-nodosum_M_contig11532:6604..6654Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig11532 6605..6654 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig11532.1.1prot_A-nodosum_M_contig11532.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig11532 6026..6654 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig11532.1.1

>prot_A-nodosum_M_contig11532.1.1 ID=prot_A-nodosum_M_contig11532.1.1|Name=mRNA_A-nodosum_M_contig11532.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=105bp
AFQYAVPVVGEELVESLECRQCADIEDAKGVDCDEPGATLASLPIRPGYW
RASEALLTIHPCLHSDACKGATAMTSPNDYCADGYQGPLCAVCTRGFGRG
AGYSC
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mRNA from alignment at A-nodosum_M_contig11532:6026..6655+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig11532.1.1 ID=mRNA_A-nodosum_M_contig11532.1.1|Name=mRNA_A-nodosum_M_contig11532.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=630bp|location=Sequence derived from alignment at A-nodosum_M_contig11532:6026..6655+ (Ascophyllum nodosum dioecious)
GCGTTCCAGTATGCGGTGCCGGTGGTTGGAGAGGAATTGGTCGAGAGCCT CGAGTGCAGGCAATGTGCAGATATCGAAGACGCGAAAGGGGTCGACTGCG ACGAACCCGGCGCGACGCTGGCTTCCTTGCCCATCAGGCCAGGGTACTGG CGGGCGAGCGAGGCCTTGTTGACGATCCACCCGTGCCTGCATTCAGATGC GTGCAAAGGGGCAACAGCGATGACGTCGCCTAATGACTACTGCGCGGATG GCTACCAGGGCCCGCGTGAGTATCGATATCGCTGTGAGACGTGTGTAGCT TGGAGCAAACTCCCCTCTACTAGAGCCATCTATCGGCACGAGAGACGTGT ATGTTCGTTGCTCTTCTGTGCTGTGTAAGTTGTTTTTATTATTTAATCAT TCCCCCGACGCATGTCCTTTGGTGCGCCATTCTCGTGTGATGCTTTTGGA TTACTTCTGCTTCTTCTTCCCGCTTCAATCGACCTACTTCGTCAGTCACC GGCGTATTAACACACCTCACCTGGACGTCGCCGCGCCCGGTCACCCCATC ACTCATACCTTGAAACAAAAATCGATTAGTCTGCGCCGTGTGCACCAGGG GTTTCGGCAGGGGCGCCGGATACAGTTGCC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig11532:6026..6655+

>mRNA_A-nodosum_M_contig11532.1.1 ID=mRNA_A-nodosum_M_contig11532.1.1|Name=mRNA_A-nodosum_M_contig11532.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=315bp|location=Sequence derived from alignment at A-nodosum_M_contig11532:6026..6655+ (Ascophyllum nodosum dioecious)
GCGTTCCAGTATGCGGTGCCGGTGGTTGGAGAGGAATTGGTCGAGAGCCT
CGAGTGCAGGCAATGTGCAGATATCGAAGACGCGAAAGGGGTCGACTGCG
ACGAACCCGGCGCGACGCTGGCTTCCTTGCCCATCAGGCCAGGGTACTGG
CGGGCGAGCGAGGCCTTGTTGACGATCCACCCGTGCCTGCATTCAGATGC
GTGCAAAGGGGCAACAGCGATGACGTCGCCTAATGACTACTGCGCGGATG
GCTACCAGGGCCCGCTCTGCGCCGTGTGCACCAGGGGTTTCGGCAGGGGC
GCCGGATACAGTTGC
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