mRNA_A-nodosum_M_contig115.46.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig115.46.1
Unique NamemRNA_A-nodosum_M_contig115.46.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig115.46.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig115contigA-nodosum_M_contig115:574330..575182 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size412
Hectar predicted targeting categoryother localisation
Exons2
Cds size234
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866553.3067737-UTR-A-nodosum_M_contig115:574329..5743911680866553.3067737-UTR-A-nodosum_M_contig115:574329..574391Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig115 574330..574391 -
1680866553.3387623-UTR-A-nodosum_M_contig115:575066..5751821680866553.3387623-UTR-A-nodosum_M_contig115:575066..575182Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig115 575067..575182 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680866553.319091-CDS-A-nodosum_M_contig115:574391..5746131680866553.319091-CDS-A-nodosum_M_contig115:574391..574613Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig115 574392..574613 -
1680866553.3300085-CDS-A-nodosum_M_contig115:575054..5750661680866553.3300085-CDS-A-nodosum_M_contig115:575054..575066Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig115 575055..575066 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig115.46.1prot_A-nodosum_M_contig115.46.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig115 574392..575066 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig115.46.1

>prot_A-nodosum_M_contig115.46.1 ID=prot_A-nodosum_M_contig115.46.1|Name=mRNA_A-nodosum_M_contig115.46.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=78bp
MQTKPSGNQQRAGDTGHTKTGGCEVQQLPCALMVMDVQGPATSMTDRRLP
QLPRSFTFAPAPGTCAAGPRVATSAVA*
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mRNA from alignment at A-nodosum_M_contig115:574330..575182-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig115.46.1 ID=mRNA_A-nodosum_M_contig115.46.1|Name=mRNA_A-nodosum_M_contig115.46.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=853bp|location=Sequence derived from alignment at A-nodosum_M_contig115:574330..575182- (Ascophyllum nodosum dioecious)
GCCAGCTATTAGGGAAGGTGGAGTACTCGCAACACGTTTGCGTCAGCGCC
TGTCGTGACACTGGCGAGAGGAGCGGGTTCGCGACAAGCTTTCTCGAGGG
GAAGACGGTATGCTGGATGCAAACGAAGGTGGGGATGACGATGCCGACAA
CAGAGACGTTACATTGGAGAATTGCACGGAATTGGTGGCAAGCCTCGGTC
AAATGCAGGGTGTGTGCGTTCCGTCGATGTAAGGTGCGGACCGCCGAGGA
GTGGCTTCAGTTCTCGGACATGTGGTCTTTGTACATGAACCGATATGGTC
GTTTGGCTGTGGACTGGGACTGGATGACCGTGTATTAGAACGATGACGTG
GGGTATAGGGTGGTGGTCAGAGGAGACTCCATCAAATCGATATTCAGGAA
GACGGTCTCGGTCATCTCGAGCAGCGCTGGAAGTGGTCAGTAGTTTCATA
CCATATCACGGGGAGAGACCAGTGCCGTCGTCACAGCGCTCGGTGTTTTC
GTCACGCTTATTGGAAGGGAGCAATGGGACACAGTGAATTTTCTCGTTCG
ATCGTTGAATCTTGCGCAGCCTTCAGGAAACCAACAACGCGCGGGAGACA
CGGGGCACACCAAGACGGGAGGATGTGAAGTTCAGCAACTGCCATGTGCA
CTCATGGTCATGGACGTCCAAGGCCCTGCGACGAGTATGACAGACCGGCG
TCTTCCTCAACTACCAAGATCATTCACATTTGCGCCAGCGCCTGGCACTT
GCGCAGCCGGGCCTCGCGTGGCAACCTCGGCAGTTGCTTAAAGTCGTCAC
CTTCTGCTTCCACCTACGGCAGCAGCCGAGAAAAGGCTACCCAAACCTGT
GCT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig115:574330..575182-

>mRNA_A-nodosum_M_contig115.46.1 ID=mRNA_A-nodosum_M_contig115.46.1|Name=mRNA_A-nodosum_M_contig115.46.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=234bp|location=Sequence derived from alignment at A-nodosum_M_contig115:574330..575182- (Ascophyllum nodosum dioecious)
ATGCAAACGAAGCCTTCAGGAAACCAACAACGCGCGGGAGACACGGGGCA
CACCAAGACGGGAGGATGTGAAGTTCAGCAACTGCCATGTGCACTCATGG
TCATGGACGTCCAAGGCCCTGCGACGAGTATGACAGACCGGCGTCTTCCT
CAACTACCAAGATCATTCACATTTGCGCCAGCGCCTGGCACTTGCGCAGC
CGGGCCTCGCGTGGCAACCTCGGCAGTTGCTTAA
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